Wall clock time and date at job start Tue Mar 31 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 114.00187 * 2 1 4 4 C 1.50694 * 109.47264 * 179.97438 * 3 2 1 5 5 N 1.31131 * 126.55130 * 90.24904 * 4 3 2 6 6 C 1.34496 * 105.61607 * 180.12513 * 5 4 3 7 7 C 1.50699 * 126.28949 * 179.90773 * 6 5 4 8 8 N 1.46502 * 109.46898 * 269.70963 * 7 6 5 9 9 C 1.36933 * 119.99874 * 269.99507 * 8 7 6 10 10 H 1.08001 * 119.99667 * 141.40674 * 9 8 7 11 11 C 1.38809 * 120.00349 * 321.41791 * 9 8 7 12 12 N 1.31623 * 120.00084 * 339.31423 * 11 9 8 13 13 Si 1.86802 * 120.00425 * 159.31582 * 11 9 8 14 14 H 1.48505 * 109.47033 * 59.99652 * 13 11 9 15 15 H 1.48498 * 109.47238 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47035 * 300.00139 * 13 11 9 17 17 C 1.46497 * 119.99818 * 90.00138 * 8 7 6 18 18 C 1.55240 * 110.46472 * 239.39484 * 17 8 7 19 19 C 1.54892 * 102.58750 * 203.39759 * 18 17 8 20 20 C 1.54267 * 104.31223 * 37.93148 * 19 18 17 21 21 C 1.53868 * 106.59899 * 336.32509 * 20 19 18 22 22 N 1.29948 * 107.42447 * 359.63791 * 6 5 4 23 23 O 1.21300 * 110.24789 * 0.23092 * 22 6 5 24 24 H 1.09000 * 109.46872 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46998 * 300.00448 * 1 2 3 26 26 H 1.08993 * 109.46901 * 60.00307 * 1 2 3 27 27 H 1.08998 * 109.47124 * 59.99859 * 3 2 1 28 28 H 1.08997 * 109.46559 * 300.00004 * 3 2 1 29 29 H 1.08994 * 109.47144 * 149.70908 * 7 6 5 30 30 H 1.09000 * 109.47265 * 29.70515 * 7 6 5 31 31 H 0.96998 * 120.00128 * 180.02562 * 12 11 9 32 32 H 1.08995 * 110.43482 * 2.04559 * 17 8 7 33 33 H 1.09001 * 110.89959 * 85.10676 * 18 17 8 34 34 H 1.08996 * 110.76907 * 321.62314 * 18 17 8 35 35 H 1.09001 * 110.48471 * 279.18701 * 19 18 17 36 36 H 1.08995 * 110.48828 * 156.68023 * 19 18 17 37 37 H 1.08997 * 110.03280 * 95.61303 * 20 19 18 38 38 H 1.09007 * 110.02807 * 216.99204 * 20 19 18 39 39 H 1.09000 * 110.03310 * 119.28397 * 21 20 19 40 40 H 1.09008 * 110.03203 * 240.66669 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2918 1.1292 -1.0524 6 6 5.5435 1.0252 -0.5713 7 6 6.8070 0.9254 -1.3866 8 7 7.1079 -0.4839 -1.6504 9 6 7.8882 -1.1926 -0.7764 10 1 7.6522 -2.2231 -0.5554 11 6 8.9822 -0.5866 -0.1742 12 7 9.5185 0.4880 -0.7129 13 14 9.6935 -1.2960 1.4007 14 1 10.1447 -2.6895 1.1563 15 1 10.8487 -0.4714 1.8375 16 1 8.6527 -1.2913 2.4600 17 6 6.5740 -1.1349 -2.8493 18 6 5.6853 -2.3464 -2.4591 19 6 5.7297 -3.2227 -3.7355 20 6 7.1792 -3.0820 -4.2445 21 6 7.7160 -1.7546 -3.6810 22 7 5.4637 1.0323 0.7257 23 8 4.3056 1.1243 1.0745 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6887 1.8464 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 7.6319 1.3759 -0.8349 30 1 6.6720 1.4511 -2.3319 31 1 10.2832 0.9113 -0.2923 32 1 6.0084 -0.4222 -3.4494 33 1 4.6653 -2.0274 -2.2448 34 1 6.1109 -2.8801 -1.6093 35 1 5.0261 -2.8489 -4.4794 36 1 5.5099 -4.2622 -3.4924 37 1 7.7843 -3.9132 -3.8826 38 1 7.1915 -3.0582 -5.3342 39 1 8.5817 -1.9416 -3.0456 40 1 7.9897 -1.0860 -4.4973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182498236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:56 Heat of formation + Delta-G solvation = 19.255790 kcal Electronic energy + Delta-G solvation = -22882.275207 eV Core-core repulsion = 19507.328559 eV Total energy + Delta-G solvation = -3374.946648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.49683 -39.39923 -38.98424 -37.11626 -35.91640 -33.91973 -32.91544 -29.48262 -29.38656 -29.06597 -27.99755 -26.74604 -25.21998 -24.03283 -22.23185 -21.37040 -20.78608 -19.23698 -18.73556 -18.06275 -17.30457 -17.26349 -16.94174 -16.58672 -16.51030 -16.02019 -15.24337 -15.11119 -14.49354 -14.24701 -14.09429 -13.60446 -13.33495 -13.15035 -12.97162 -12.85627 -12.75586 -12.61082 -12.37687 -12.19277 -12.13073 -11.94988 -11.89410 -11.82871 -11.80860 -11.30806 -11.12864 -10.86639 -10.76866 -10.56154 -8.65926 -7.94517 -5.54731 0.20151 1.27109 1.39184 1.43179 1.48414 1.88845 2.43988 2.71816 3.11614 3.25215 3.37660 3.57585 3.95073 3.97546 4.03197 4.24475 4.26476 4.40171 4.55965 4.61334 4.64375 4.71865 4.72456 4.81198 4.86976 4.88380 4.93201 4.96513 5.13483 5.17411 5.22472 5.28986 5.35825 5.47500 5.60777 5.61900 5.74681 6.05177 6.40962 7.06307 7.38195 7.73078 8.27257 9.04870 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.006625 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.881967 B = 4225.238148 C = 5541.196458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.419 6.419 3 C 0.167 3.833 4 C 0.157 3.843 5 N -0.477 5.477 6 C 0.163 3.837 7 C 0.227 3.773 8 N -0.571 5.571 9 C -0.256 4.256 10 H 0.048 0.952 11 C -0.018 4.018 12 N -0.906 5.906 13 Si 0.944 3.056 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.291 1.291 17 C 0.166 3.834 18 C -0.127 4.127 19 C -0.110 4.110 20 C -0.112 4.112 21 C -0.126 4.126 22 N -0.404 5.404 23 O 0.075 5.925 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.255 0.745 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.046 0.516 -2.609 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C 0.089 3.911 4 C -0.064 4.064 5 N -0.213 5.213 6 C -0.112 4.112 7 C 0.098 3.902 8 N -0.289 5.289 9 C -0.386 4.386 10 H 0.066 0.934 11 C -0.217 4.217 12 N -0.549 5.549 13 Si 0.773 3.227 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.218 1.218 17 C 0.060 3.940 18 C -0.167 4.167 19 C -0.148 4.148 20 C -0.150 4.150 21 C -0.165 4.165 22 N -0.112 5.112 23 O 0.017 5.983 24 H 0.113 0.887 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.140 0.860 28 H 0.136 0.864 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.973 0.383 -2.500 16.172 hybrid contribution 0.494 -0.035 1.199 1.297 sum -15.479 0.348 -1.301 15.537 Atomic orbital electron populations 1.23056 0.77073 1.04421 1.02222 1.87938 1.23270 1.26644 1.95954 1.20866 0.77178 0.86599 1.06477 1.29238 0.99229 0.97180 0.80772 1.71829 1.00601 1.19081 1.29767 1.27798 0.97030 0.97959 0.88456 1.19286 0.87416 0.88052 0.95475 1.43863 1.55344 1.07423 1.22310 1.18816 1.04123 0.96347 1.19310 0.93426 1.25690 0.95901 0.98612 1.01466 1.70023 1.22773 1.23330 1.38796 0.85714 0.77340 0.78476 0.81211 1.19685 1.21111 1.21794 1.21564 0.92901 0.92960 0.86623 1.22777 0.98111 0.97790 0.98006 1.22227 0.96916 0.99378 0.96230 1.22020 0.96002 0.96484 1.00471 1.22374 0.99203 0.96735 0.98202 1.74678 0.97547 1.21600 1.17401 1.85227 1.11848 1.65018 1.36251 0.88655 0.91398 0.91838 0.86008 0.86388 0.89223 0.91524 0.93555 0.92181 0.93942 0.93968 0.90502 0.91139 0.92599 0.90334 0.93440 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -9.86 10.69 -148.98 -1.59 -11.45 16 3 C 0.17 3.39 6.56 71.23 0.47 3.86 16 4 C 0.16 5.30 8.14 88.38 0.72 6.02 16 5 N -0.48 -19.26 11.55 -303.21 -3.50 -22.76 16 6 C 0.16 7.60 7.80 138.46 1.08 8.68 16 7 C 0.23 11.37 5.90 85.63 0.51 11.87 16 8 N -0.57 -29.07 2.44 -675.72 -1.65 -30.71 16 9 C -0.26 -14.24 7.75 84.03 0.65 -13.59 16 10 H 0.05 2.74 6.69 -2.91 -0.02 2.72 16 11 C -0.02 -1.01 4.96 84.86 0.42 -0.59 16 12 N -0.91 -52.54 11.50 21.65 0.25 -52.29 16 13 Si 0.94 46.46 29.60 68.60 2.03 48.49 16 14 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 16 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 17 C 0.17 7.21 3.40 46.19 0.16 7.37 16 18 C -0.13 -5.09 6.46 32.01 0.21 -4.88 16 19 C -0.11 -3.37 6.82 31.67 0.22 -3.16 16 20 C -0.11 -3.56 6.80 31.32 0.21 -3.35 16 21 C -0.13 -5.11 6.41 31.32 0.20 -4.91 16 22 N -0.40 -19.14 12.16 -60.32 -0.73 -19.87 16 23 O 0.08 2.96 11.31 74.84 0.85 3.81 16 24 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.09 5.04 5.56 -2.39 -0.01 5.03 16 30 H 0.07 3.12 7.93 -2.39 -0.02 3.10 16 31 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.06 2.53 7.84 -2.39 -0.02 2.52 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.04 1.90 6.58 -2.39 -0.02 1.88 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.05 2.28 6.94 -2.39 -0.02 2.27 16 40 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -69.79 332.00 2.77 -67.02 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.03 Total: 8.84 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 6.09 Total: 8.92 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -5.63 Total: -125.63 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.75 Total: -7.64 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -69.79 2.77 -67.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182498236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.279 kcal (2) G-P(sol) polarization free energy of solvation -69.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds