Wall clock time and date at job start Tue Mar 31 2020 05:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46895 * 2 1 4 4 C 1.53007 * 109.47263 * 240.00328 * 2 1 3 5 5 O 1.42894 * 109.47319 * 120.00122 * 2 1 3 6 6 C 1.42898 * 114.00487 * 60.00126 * 5 2 1 7 7 C 1.50696 * 109.47403 * 180.02562 * 6 5 2 8 8 O 1.21290 * 120.00012 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99736 * 179.97438 * 7 6 5 10 10 C 1.40159 * 119.99983 * 179.97438 * 9 7 6 11 11 C 1.40409 * 125.97033 * 0.02562 * 10 9 7 12 12 C 1.35241 * 107.86602 * 179.73843 * 11 10 9 13 13 N 1.34966 * 107.86079 * 0.39163 * 12 11 10 14 14 C 1.46500 * 125.97782 * 179.87198 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71059 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31219 * 125.97718 * 179.97438 * 10 9 7 24 24 H 1.09000 * 109.47499 * 299.99500 * 1 2 3 25 25 H 1.09001 * 109.47247 * 60.00377 * 1 2 3 26 26 H 1.08999 * 109.46879 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47413 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47412 * 300.00319 * 3 2 1 29 29 H 1.08997 * 109.47362 * 59.99867 * 3 2 1 30 30 H 1.08994 * 109.46627 * 299.99599 * 4 2 1 31 31 H 1.08997 * 109.47121 * 59.99670 * 4 2 1 32 32 H 1.08995 * 109.47180 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.46875 * 59.99801 * 6 5 2 34 34 H 1.09006 * 109.46878 * 300.00489 * 6 5 2 35 35 H 0.97003 * 120.00166 * 0.02562 * 9 7 6 36 36 H 1.08002 * 126.06850 * 0.02562 * 11 10 9 37 37 H 1.08003 * 126.07024 * 180.26845 * 12 11 10 38 38 H 1.09004 * 109.47078 * 4.71821 * 14 13 12 39 39 H 1.08993 * 109.47364 * 244.71592 * 14 13 12 40 40 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0063 -0.6736 1.1667 6 6 1.5848 -2.0355 1.2645 7 6 2.1412 -2.6443 2.5257 8 8 2.8313 -1.9777 3.2677 9 7 1.8719 -3.9296 2.8292 10 6 2.3898 -4.4960 4.0020 11 6 3.1987 -3.8430 4.9458 12 6 3.4825 -4.7256 5.9305 13 7 2.8858 -5.8962 5.6217 14 6 2.9378 -7.1249 6.4178 15 6 1.5356 -7.5858 6.7225 16 1 0.6904 -7.0201 6.3590 17 6 1.3318 -8.7293 7.4651 18 7 2.3611 -9.4210 7.9032 19 14 -0.4062 -9.3010 7.8421 20 1 -0.3536 -10.5497 8.6441 21 1 -1.1176 -8.2483 8.6111 22 1 -1.1289 -9.5592 6.5709 23 7 2.2028 -5.7289 4.4104 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 -1.7488 -1.2493 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7208 -1.2495 33 1 1.9493 -2.5915 0.4007 34 1 0.4959 -2.0778 1.2907 35 1 1.3203 -4.4628 2.2356 36 1 3.5311 -2.8166 4.8967 37 1 4.0819 -4.5292 6.8071 38 1 3.4672 -6.9313 7.3508 39 1 3.4610 -7.8993 5.8571 40 1 3.2636 -9.1244 7.7073 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182933100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:14 Heat of formation + Delta-G solvation = -5.881372 kcal Electronic energy + Delta-G solvation = -21453.836506 eV Core-core repulsion = 18077.799829 eV Total energy + Delta-G solvation = -3376.036678 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.78620 -39.78513 -38.60841 -34.86369 -33.75387 -33.65872 -31.04866 -29.41529 -28.74275 -27.79549 -27.38530 -26.01744 -23.14327 -21.78067 -20.58840 -20.17607 -19.62876 -17.33396 -17.19598 -16.97613 -16.25217 -16.15878 -15.42143 -14.98990 -14.75509 -14.27308 -13.80874 -13.78613 -13.66196 -13.42880 -13.14007 -12.57915 -12.46866 -12.39168 -12.22518 -12.17541 -12.09335 -11.82580 -11.61720 -11.17075 -10.95757 -10.81985 -10.47052 -10.16850 -10.04303 -9.91124 -9.56188 -9.01152 -8.59020 -8.22108 -7.54124 -6.58952 -4.33043 2.25327 2.41088 2.83633 3.37077 3.38720 3.42121 3.58121 3.63216 3.91942 4.39045 4.41117 4.45646 4.61660 4.66266 4.81448 4.92523 5.12245 5.14848 5.19006 5.34382 5.35299 5.44803 5.48408 5.49209 5.66487 5.69749 5.88727 5.90936 6.16261 6.40279 6.47994 6.58601 6.74017 6.86785 7.31113 7.47182 7.69654 7.82148 8.20113 8.33239 8.52547 8.60962 9.35195 10.78635 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034277 B = 0.002898 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.672019 B = 9658.975036 C =10125.452432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.105 3.895 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.349 6.349 6 C 0.045 3.955 7 C 0.519 3.481 8 O -0.496 6.496 9 N -0.630 5.630 10 C 0.260 3.740 11 C -0.285 4.285 12 C 0.051 3.949 13 N -0.317 5.317 14 C 0.249 3.751 15 C -0.608 4.608 16 H 0.063 0.937 17 C 0.023 3.977 18 N -0.905 5.905 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.301 5.301 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.411 0.589 36 H 0.161 0.839 37 H 0.168 0.832 38 H 0.046 0.954 39 H 0.035 0.965 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.173 17.246 -17.129 24.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.065 3.935 3 C -0.194 4.194 4 C -0.239 4.239 5 O -0.268 6.268 6 C -0.035 4.035 7 C 0.303 3.697 8 O -0.368 6.368 9 N -0.280 5.280 10 C 0.007 3.993 11 C -0.316 4.316 12 C -0.098 4.098 13 N -0.099 5.099 14 C 0.131 3.869 15 C -0.646 4.646 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.540 5.540 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.211 1.211 23 N -0.132 5.132 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.246 0.754 36 H 0.179 0.821 37 H 0.186 0.814 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.952 15.444 -15.879 22.347 hybrid contribution 0.791 1.438 -1.097 1.975 sum -2.161 16.882 -16.977 24.039 Atomic orbital electron populations 1.22471 0.95533 1.02704 1.03187 1.21605 0.93288 0.93475 0.85091 1.21743 1.02226 0.92881 1.02562 1.22469 1.02552 1.00990 0.97858 1.88102 1.74031 1.21595 1.43065 1.22108 0.99965 0.85579 0.95824 1.20211 0.81251 0.80825 0.87393 1.90669 1.36003 1.60278 1.49806 1.42298 1.51946 1.11884 1.21873 1.19063 0.98697 0.92446 0.89122 1.21553 1.10678 1.02681 0.96692 1.22571 1.00099 0.86668 1.00500 1.48790 1.35006 1.10872 1.15239 1.19767 1.00014 0.78555 0.88560 1.22102 0.91178 1.13350 1.38000 0.91846 1.25929 1.06166 0.92917 0.93186 1.70852 0.99440 1.39977 1.43732 0.83417 0.73210 0.76355 0.76630 1.20512 1.21229 1.21140 1.77345 1.20705 1.15003 1.00169 0.91384 0.91275 0.92074 0.91582 0.91031 0.91561 0.92083 0.91276 0.91418 0.89762 0.89732 0.75371 0.82115 0.81431 0.93587 0.94748 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 8.25 37.16 0.31 -0.90 16 2 C 0.10 0.85 1.14 -90.62 -0.10 0.75 16 3 C -0.14 -1.00 8.84 37.16 0.33 -0.67 16 4 C -0.18 -1.19 8.25 37.16 0.31 -0.88 16 5 O -0.35 -4.14 9.52 -55.14 -0.52 -4.66 16 6 C 0.05 0.46 5.62 36.00 0.20 0.66 16 7 C 0.52 7.67 7.87 -10.99 -0.09 7.59 16 8 O -0.50 -9.30 13.63 -14.36 -0.20 -9.49 16 9 N -0.63 -9.69 5.45 -11.13 -0.06 -9.75 16 10 C 0.26 5.28 8.11 -154.39 -1.25 4.03 16 11 C -0.28 -5.78 9.61 -39.83 -0.38 -6.17 16 12 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 13 N -0.32 -7.49 3.67 -62.56 -0.23 -7.72 16 14 C 0.25 6.34 5.57 -5.19 -0.03 6.31 16 15 C -0.61 -17.15 9.24 -34.44 -0.32 -17.47 16 16 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 17 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 18 N -0.90 -26.37 13.65 55.43 0.76 -25.61 16 19 Si 1.08 24.90 29.90 -169.99 -5.08 19.82 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 23 N -0.30 -7.01 12.42 31.44 0.39 -6.62 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.37 6.54 -51.93 -0.34 0.03 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.36 6.54 -51.93 -0.34 0.02 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.65 6.42 -51.93 -0.33 0.32 16 34 H 0.08 0.67 6.42 -51.93 -0.33 0.33 16 35 H 0.41 4.91 8.82 -40.82 -0.36 4.55 16 36 H 0.16 3.20 5.92 -52.49 -0.31 2.89 16 37 H 0.17 2.78 8.06 -52.48 -0.42 2.36 16 38 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 39 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 40 H 0.27 7.61 7.22 -40.82 -0.29 7.32 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -34.73 335.64 -6.94 -41.66 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.73 Total: 2.68 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.32 Total: -5.37 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.86 Total: -49.70 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.72 Total: -14.16 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.73 -6.94 -41.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182933100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.783 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds