Wall clock time and date at job start Tue Mar 31 2020 05:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36938 * 119.99602 * 2 1 4 4 H 1.07998 * 119.99783 * 203.03502 * 3 2 1 5 5 C 1.38811 * 120.00374 * 23.04162 * 3 2 1 6 6 N 1.31615 * 120.00003 * 12.95326 * 5 3 2 7 7 Si 1.86799 * 119.99884 * 192.95821 * 5 3 2 8 8 H 1.48496 * 109.47186 * 89.99924 * 7 5 3 9 9 H 1.48507 * 109.46942 * 209.99607 * 7 5 3 10 10 H 1.48496 * 109.47335 * 329.99515 * 7 5 3 11 11 C 1.46496 * 120.00253 * 179.97438 * 2 1 3 12 12 C 1.50705 * 109.46855 * 90.00318 * 11 2 1 13 13 O 1.21268 * 119.99954 * 0.02562 * 12 11 2 14 14 N 1.34774 * 119.99701 * 179.97438 * 12 11 2 15 15 C 1.38728 * 119.99984 * 179.72240 * 14 12 11 16 16 C 1.36518 * 126.88195 * 179.97438 * 15 14 12 17 17 C 1.40953 * 103.92411 * 180.02562 * 16 15 14 18 18 C 1.50697 * 126.73824 * 180.02562 * 17 16 15 19 19 C 1.52995 * 109.47266 * 74.99982 * 18 17 16 20 20 C 1.53002 * 109.47148 * 195.00291 * 18 17 16 21 21 C 1.52998 * 109.47070 * 315.00063 * 18 17 16 22 22 N 1.30340 * 106.52898 * 0.02562 * 17 16 15 23 23 O 1.20905 * 111.82112 * 359.69800 * 22 17 16 24 24 H 1.08997 * 109.47150 * 275.12551 * 1 2 3 25 25 H 1.09005 * 109.46560 * 35.12746 * 1 2 3 26 26 H 1.09000 * 109.46839 * 155.12377 * 1 2 3 27 27 H 0.97000 * 120.00038 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.47146 * 330.00828 * 11 2 1 29 29 H 1.09000 * 109.47433 * 210.00161 * 11 2 1 30 30 H 0.96995 * 120.00433 * 0.02562 * 14 12 11 31 31 H 1.08003 * 128.03936 * 359.97273 * 16 15 14 32 32 H 1.08999 * 109.46895 * 60.00444 * 19 18 17 33 33 H 1.09000 * 109.47514 * 179.97438 * 19 18 17 34 34 H 1.08994 * 109.47388 * 300.00623 * 19 18 17 35 35 H 1.08997 * 109.47116 * 59.99795 * 20 18 17 36 36 H 1.09000 * 109.47374 * 179.97438 * 20 18 17 37 37 H 1.08996 * 109.46921 * 300.00071 * 20 18 17 38 38 H 1.09003 * 109.47298 * 59.99688 * 21 18 17 39 39 H 1.08993 * 109.47394 * 180.02562 * 21 18 17 40 40 H 1.09007 * 109.47313 * 300.00062 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1651 1.2233 -0.3660 5 6 1.5387 2.3402 0.4705 6 7 0.4120 2.2598 1.1461 7 14 2.3154 4.0074 0.1447 8 1 1.7978 4.5530 -1.1358 9 1 1.9756 4.9368 1.2521 10 1 3.7904 3.8581 0.0589 11 6 2.1976 -1.2687 0.0006 12 6 2.4488 -1.7042 -1.4201 13 8 2.0552 -1.0219 -2.3421 14 7 3.1119 -2.8516 -1.6659 15 6 3.3381 -3.2555 -2.9736 16 6 3.9897 -4.3837 -3.3816 17 6 3.9411 -4.3134 -4.7885 18 6 4.5137 -5.3118 -5.7613 19 6 3.6237 -6.5556 -5.7986 20 6 4.5756 -4.6868 -7.1565 21 6 5.9233 -5.7066 -5.3163 22 7 3.3037 -3.2153 -5.0832 23 8 2.9563 -2.6174 -4.0914 24 1 -0.3633 0.0918 1.0235 25 1 -0.3632 0.8406 -0.5914 26 1 -0.3633 -0.9323 -0.4323 27 1 -0.0152 3.0663 1.4745 28 1 1.6085 -2.0281 0.5146 29 1 3.1500 -1.1381 0.5144 30 1 3.4270 -3.3971 -0.9284 31 1 4.4388 -5.1512 -2.7688 32 1 2.6194 -6.2744 -6.1156 33 1 4.0375 -7.2777 -6.5025 34 1 3.5795 -7.0008 -4.8047 35 1 5.2097 -3.8007 -7.1298 36 1 4.9902 -5.4088 -7.8600 37 1 3.5714 -4.4056 -7.4734 38 1 5.8793 -6.1518 -4.3223 39 1 6.3377 -6.4284 -6.0201 40 1 6.5575 -4.8204 -5.2897 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263923019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:16 Heat of formation + Delta-G solvation = 46.539148 kcal Electronic energy + Delta-G solvation = -22064.974979 eV Core-core repulsion = 18691.211426 eV Total energy + Delta-G solvation = -3373.763553 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.66639 -39.39928 -37.59640 -35.56037 -34.78378 -32.47269 -31.45269 -30.24727 -27.65179 -27.50161 -27.09923 -25.85833 -23.85369 -22.71591 -21.79732 -20.43502 -18.92277 -17.79855 -17.42707 -16.87706 -16.58220 -15.70546 -14.99109 -14.73334 -14.68087 -14.30518 -14.15208 -13.76783 -13.39882 -13.26412 -13.01526 -12.60149 -12.39376 -11.89202 -11.88088 -11.51611 -11.47854 -11.42151 -11.31490 -11.01570 -10.88690 -10.79837 -10.74073 -10.47843 -10.04203 -9.96359 -9.92421 -9.59833 -8.59783 -8.25762 -6.89993 -5.80087 -3.27533 1.63893 2.32370 2.50179 3.24999 3.38877 3.45579 3.46795 3.75615 4.05504 4.46038 4.53364 4.74096 4.89574 5.08751 5.18041 5.26803 5.36733 5.40260 5.42024 5.47178 5.54237 5.58932 5.66403 5.67437 5.75482 5.85762 5.96382 6.05903 6.07903 6.12990 6.19877 6.51593 6.69201 7.30343 7.39633 7.64942 7.77100 8.26542 8.47357 8.60374 9.12984 9.73483 10.19263 11.24880 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034285 B = 0.003412 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.479808 B = 8204.503823 C = 8516.494243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.570 5.570 3 C -0.260 4.260 4 H 0.068 0.932 5 C 0.009 3.991 6 N -0.904 5.904 7 Si 0.910 3.090 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.140 3.860 12 C 0.461 3.539 13 O -0.476 6.476 14 N -0.640 5.640 15 C 0.232 3.768 16 C -0.296 4.296 17 C 0.049 3.951 18 C 0.011 3.989 19 C -0.137 4.137 20 C -0.139 4.139 21 C -0.137 4.137 22 N -0.373 5.373 23 O 0.107 5.893 24 H 0.039 0.961 25 H 0.045 0.955 26 H -0.001 1.001 27 H 0.255 0.745 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.425 0.575 31 H 0.168 0.832 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.710 -19.172 -7.526 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.288 5.288 3 C -0.389 4.389 4 H 0.086 0.914 5 C -0.190 4.190 6 N -0.547 5.547 7 Si 0.739 3.261 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.006 3.994 12 C 0.246 3.754 13 O -0.343 6.343 14 N -0.297 5.297 15 C 0.070 3.930 16 C -0.324 4.324 17 C -0.110 4.110 18 C 0.010 3.990 19 C -0.195 4.195 20 C -0.196 4.196 21 C -0.195 4.195 22 N -0.083 5.083 23 O 0.049 5.951 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.017 0.983 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.265 0.735 31 H 0.186 0.814 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.824 -17.705 -9.158 21.414 hybrid contribution 0.801 0.166 0.734 1.099 sum 8.626 -17.538 -8.424 21.283 Atomic orbital electron populations 1.20903 0.81743 0.96094 0.99633 1.43655 1.02209 0.99755 1.83209 1.19154 0.98314 0.85513 1.35958 0.91393 1.24989 0.97664 0.98651 0.97725 1.70067 1.19297 1.27533 1.37834 0.86183 0.78802 0.83590 0.77505 1.21260 1.21623 1.20362 1.20693 0.99141 0.90978 0.88581 1.24700 0.75728 0.78199 0.96759 1.90753 1.46163 1.51070 1.46309 1.43946 1.57909 1.25989 1.01878 1.21207 0.95833 0.91382 0.84537 1.21622 1.14408 1.01782 0.94572 1.22978 0.99650 0.94927 0.93444 1.18947 0.95275 0.92024 0.92708 1.21849 0.99402 0.95910 1.02296 1.21807 1.02802 1.00567 0.94449 1.21856 0.94422 1.01601 1.01575 1.73914 1.18224 1.09127 1.06989 1.85156 1.59270 1.41922 1.08755 0.94288 0.93624 0.98261 0.93523 0.90457 0.89385 0.73530 0.81445 0.92399 0.91766 0.92101 0.92342 0.92142 0.91954 0.92046 0.91826 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.98 59.85 0.54 4.54 16 2 N -0.57 -14.24 2.41 -182.50 -0.44 -14.68 16 3 C -0.26 -7.22 9.65 -15.06 -0.15 -7.36 16 4 H 0.07 1.87 7.86 -52.49 -0.41 1.46 16 5 C 0.01 0.24 5.10 -17.43 -0.09 0.15 16 6 N -0.90 -26.13 10.71 55.49 0.59 -25.54 16 7 Si 0.91 22.26 29.57 -169.99 -5.03 17.24 16 8 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.14 2.60 6.12 -5.19 -0.03 2.57 16 12 C 0.46 8.66 7.86 -10.98 -0.09 8.57 16 13 O -0.48 -11.52 15.27 -15.83 -0.24 -11.76 16 14 N -0.64 -8.90 5.39 -11.79 -0.06 -8.96 16 15 C 0.23 3.58 7.92 -15.05 -0.12 3.46 16 16 C -0.30 -3.66 10.51 -39.17 -0.41 -4.07 16 17 C 0.05 0.67 5.69 -82.20 -0.47 0.20 16 18 C 0.01 0.11 0.97 -155.66 -0.15 -0.04 16 19 C -0.14 -1.16 8.46 37.16 0.31 -0.84 16 20 C -0.14 -1.40 8.06 37.16 0.30 -1.11 16 21 C -0.14 -1.09 8.22 37.16 0.31 -0.79 16 22 N -0.37 -6.40 11.45 33.48 0.38 -6.02 16 23 O 0.11 2.04 9.63 -4.79 -0.05 1.99 16 24 H 0.04 1.00 7.34 -51.93 -0.38 0.62 16 25 H 0.04 1.25 7.34 -51.93 -0.38 0.87 16 26 H 0.00 -0.03 8.03 -51.93 -0.42 -0.44 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 29 H 0.09 1.47 8.04 -51.93 -0.42 1.05 16 30 H 0.43 3.82 8.82 -40.82 -0.36 3.46 16 31 H 0.17 1.47 7.91 -52.48 -0.41 1.05 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.71 8.10 -51.93 -0.42 0.28 16 38 H 0.06 0.44 7.72 -51.93 -0.40 0.03 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -34.57 337.85 -5.92 -40.49 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -6.12 Total: -3.13 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.05 Total: 5.29 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.47 Total: -55.21 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.29 Total: -9.77 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.57 -5.92 -40.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263923019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.026 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds