Wall clock time and date at job start Tue Mar 31 2020 05:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36938 * 119.99602 * 2 1 4 4 H 1.07998 * 119.99783 * 203.03502 * 3 2 1 5 5 C 1.38811 * 120.00374 * 23.04162 * 3 2 1 6 6 N 1.31615 * 120.00003 * 12.95326 * 5 3 2 7 7 Si 1.86799 * 119.99884 * 192.95821 * 5 3 2 8 8 H 1.48496 * 109.47186 * 89.99924 * 7 5 3 9 9 H 1.48507 * 109.46942 * 209.99607 * 7 5 3 10 10 H 1.48496 * 109.47335 * 329.99515 * 7 5 3 11 11 C 1.46496 * 120.00253 * 179.97438 * 2 1 3 12 12 C 1.50705 * 109.46855 * 90.00318 * 11 2 1 13 13 O 1.21268 * 119.99954 * 0.02562 * 12 11 2 14 14 N 1.34774 * 119.99701 * 179.97438 * 12 11 2 15 15 C 1.38728 * 119.99984 * 179.72240 * 14 12 11 16 16 C 1.36518 * 126.88195 * 179.97438 * 15 14 12 17 17 C 1.40953 * 103.92411 * 180.02562 * 16 15 14 18 18 C 1.50697 * 126.73824 * 180.02562 * 17 16 15 19 19 C 1.52995 * 109.47266 * 74.99982 * 18 17 16 20 20 C 1.53002 * 109.47148 * 195.00291 * 18 17 16 21 21 C 1.52998 * 109.47070 * 315.00063 * 18 17 16 22 22 N 1.30340 * 106.52898 * 0.02562 * 17 16 15 23 23 O 1.20905 * 111.82112 * 359.69800 * 22 17 16 24 24 H 1.08997 * 109.47150 * 275.12551 * 1 2 3 25 25 H 1.09005 * 109.46560 * 35.12746 * 1 2 3 26 26 H 1.09000 * 109.46839 * 155.12377 * 1 2 3 27 27 H 0.97000 * 120.00038 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.47146 * 330.00828 * 11 2 1 29 29 H 1.09000 * 109.47433 * 210.00161 * 11 2 1 30 30 H 0.96995 * 120.00433 * 0.02562 * 14 12 11 31 31 H 1.08003 * 128.03936 * 359.97273 * 16 15 14 32 32 H 1.08999 * 109.46895 * 60.00444 * 19 18 17 33 33 H 1.09000 * 109.47514 * 179.97438 * 19 18 17 34 34 H 1.08994 * 109.47388 * 300.00623 * 19 18 17 35 35 H 1.08997 * 109.47116 * 59.99795 * 20 18 17 36 36 H 1.09000 * 109.47374 * 179.97438 * 20 18 17 37 37 H 1.08996 * 109.46921 * 300.00071 * 20 18 17 38 38 H 1.09003 * 109.47298 * 59.99688 * 21 18 17 39 39 H 1.08993 * 109.47394 * 180.02562 * 21 18 17 40 40 H 1.09007 * 109.47313 * 300.00062 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1651 1.2233 -0.3660 5 6 1.5387 2.3402 0.4705 6 7 0.4120 2.2598 1.1461 7 14 2.3154 4.0074 0.1447 8 1 1.7978 4.5530 -1.1358 9 1 1.9756 4.9368 1.2521 10 1 3.7904 3.8581 0.0589 11 6 2.1976 -1.2687 0.0006 12 6 2.4488 -1.7042 -1.4201 13 8 2.0552 -1.0219 -2.3421 14 7 3.1119 -2.8516 -1.6659 15 6 3.3381 -3.2555 -2.9736 16 6 3.9897 -4.3837 -3.3816 17 6 3.9411 -4.3134 -4.7885 18 6 4.5137 -5.3118 -5.7613 19 6 3.6237 -6.5556 -5.7986 20 6 4.5756 -4.6868 -7.1565 21 6 5.9233 -5.7066 -5.3163 22 7 3.3037 -3.2153 -5.0832 23 8 2.9563 -2.6174 -4.0914 24 1 -0.3633 0.0918 1.0235 25 1 -0.3632 0.8406 -0.5914 26 1 -0.3633 -0.9323 -0.4323 27 1 -0.0152 3.0663 1.4745 28 1 1.6085 -2.0281 0.5146 29 1 3.1500 -1.1381 0.5144 30 1 3.4270 -3.3971 -0.9284 31 1 4.4388 -5.1512 -2.7688 32 1 2.6194 -6.2744 -6.1156 33 1 4.0375 -7.2777 -6.5025 34 1 3.5795 -7.0008 -4.8047 35 1 5.2097 -3.8007 -7.1298 36 1 4.9902 -5.4088 -7.8600 37 1 3.5714 -4.4056 -7.4734 38 1 5.8793 -6.1518 -4.3223 39 1 6.3377 -6.4284 -6.0201 40 1 6.5575 -4.8204 -5.2897 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263923019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:15 Heat of formation + Delta-G solvation = 23.323381 kcal Electronic energy + Delta-G solvation = -22065.981690 eV Core-core repulsion = 18691.211426 eV Total energy + Delta-G solvation = -3374.770264 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.83579 -40.88692 -38.42817 -37.30087 -36.30855 -33.55724 -33.39122 -31.54872 -29.01546 -28.16313 -28.11593 -27.88807 -25.00798 -24.21932 -23.09112 -21.90016 -20.11235 -19.02479 -18.68282 -18.60409 -18.04061 -17.06548 -16.64181 -16.26881 -15.77206 -15.44358 -15.17867 -15.04471 -14.90861 -14.83752 -14.27588 -13.81921 -13.23742 -13.19992 -13.07999 -12.85768 -12.66092 -12.58529 -12.48510 -12.43001 -12.32186 -12.20914 -12.07858 -12.05551 -11.91896 -11.64876 -11.24509 -10.97287 -10.66469 -9.46591 -8.89473 -7.89405 -5.38422 0.40259 1.26007 1.34790 1.43901 1.47253 1.53697 1.85793 2.42393 2.55839 3.12355 3.27751 3.60798 3.66098 4.01169 4.04650 4.12230 4.13428 4.29104 4.54867 4.56321 4.66021 4.74296 4.77185 4.77943 4.88091 4.93631 4.99341 5.00946 5.12761 5.27254 5.29249 5.35333 5.38837 5.43558 5.57636 5.65683 6.16635 6.29718 7.04880 7.10732 7.41510 7.75878 8.16805 9.13909 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034285 B = 0.003412 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.479808 B = 8204.503823 C = 8516.494243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.593 5.593 3 C -0.266 4.266 4 H 0.064 0.936 5 C -0.045 4.045 6 N -0.930 5.930 7 Si 0.965 3.035 8 H -0.296 1.296 9 H -0.286 1.286 10 H -0.267 1.267 11 C 0.138 3.862 12 C 0.471 3.529 13 O -0.539 6.539 14 N -0.615 5.615 15 C 0.204 3.796 16 C -0.263 4.263 17 C 0.052 3.948 18 C 0.007 3.993 19 C -0.133 4.133 20 C -0.139 4.139 21 C -0.133 4.133 22 N -0.408 5.408 23 O 0.057 5.943 24 H 0.025 0.975 25 H 0.005 0.995 26 H 0.025 0.975 27 H 0.251 0.749 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.451 0.549 31 H 0.213 0.787 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.904 -22.336 -7.243 25.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.313 5.313 3 C -0.396 4.396 4 H 0.082 0.918 5 C -0.241 4.241 6 N -0.576 5.576 7 Si 0.793 3.207 8 H -0.223 1.223 9 H -0.212 1.212 10 H -0.191 1.191 11 C 0.006 3.994 12 C 0.258 3.742 13 O -0.412 6.412 14 N -0.274 5.274 15 C 0.043 3.957 16 C -0.290 4.290 17 C -0.107 4.107 18 C 0.006 3.994 19 C -0.191 4.191 20 C -0.196 4.196 21 C -0.191 4.191 22 N -0.123 5.123 23 O 0.004 5.996 24 H 0.044 0.956 25 H 0.024 0.976 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.295 0.705 31 H 0.230 0.770 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.073 -20.949 -8.822 24.862 hybrid contribution 0.206 0.935 0.534 1.096 sum 10.279 -20.013 -8.288 23.977 Atomic orbital electron populations 1.20604 0.82453 0.95651 0.98153 1.43804 1.02266 1.01263 1.83965 1.19386 0.98269 0.87101 1.34803 0.91827 1.25690 0.98481 1.01609 0.98275 1.70184 1.20470 1.27829 1.39104 0.85309 0.78586 0.80080 0.76702 1.22333 1.21165 1.19143 1.21046 1.00345 0.89399 0.88590 1.24256 0.75273 0.78754 0.95946 1.90751 1.49109 1.53461 1.47842 1.43306 1.56679 1.24864 1.02504 1.21552 0.97484 0.92550 0.84138 1.22161 1.11762 1.00850 0.94191 1.23806 0.97702 0.94196 0.94952 1.19220 0.96900 0.91680 0.91562 1.21850 0.98145 0.95428 1.03705 1.21814 1.01429 1.00799 0.95559 1.21865 0.92377 1.01755 1.03111 1.73963 1.20260 1.10972 1.07154 1.85101 1.60842 1.43617 1.10041 0.95623 0.97597 0.95681 0.93979 0.86375 0.87022 0.70461 0.76995 0.94188 0.89297 0.90919 0.93903 0.89369 0.93990 0.90478 0.89557 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.92 8.98 127.77 1.15 10.07 16 2 N -0.59 -29.63 2.41 -731.30 -1.76 -31.39 16 3 C -0.27 -14.87 9.65 84.03 0.81 -14.06 16 4 H 0.06 3.53 7.86 -2.91 -0.02 3.51 16 5 C -0.04 -2.55 5.10 84.86 0.43 -2.12 16 6 N -0.93 -55.05 10.71 21.65 0.23 -54.82 16 7 Si 0.96 46.50 29.57 68.60 2.03 48.53 16 8 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 9 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 C 0.14 4.84 6.12 85.64 0.52 5.37 16 12 C 0.47 17.25 7.86 87.66 0.69 17.94 16 13 O -0.54 -26.71 15.27 17.47 0.27 -26.44 16 14 N -0.61 -15.76 5.39 -419.71 -2.26 -18.02 16 15 C 0.20 6.00 7.92 83.20 0.66 6.66 16 16 C -0.26 -5.68 10.51 22.53 0.24 -5.45 16 17 C 0.05 1.34 5.69 43.44 0.25 1.59 16 18 C 0.01 0.13 0.97 -52.93 -0.05 0.08 16 19 C -0.13 -1.82 8.46 71.98 0.61 -1.22 16 20 C -0.14 -2.64 8.06 71.98 0.58 -2.06 16 21 C -0.13 -1.60 8.22 71.98 0.59 -1.01 16 22 N -0.41 -14.23 11.45 -48.98 -0.56 -14.79 16 23 O 0.06 2.23 9.63 90.08 0.87 3.09 16 24 H 0.03 1.34 7.34 -2.39 -0.02 1.33 16 25 H 0.01 0.30 7.34 -2.38 -0.02 0.28 16 26 H 0.02 1.10 8.03 -2.39 -0.02 1.08 16 27 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.12 3.20 8.07 -2.39 -0.02 3.18 16 29 H 0.11 3.41 8.04 -2.39 -0.02 3.39 16 30 H 0.45 6.40 8.82 -92.71 -0.82 5.58 16 31 H 0.21 2.48 7.91 -2.91 -0.02 2.46 16 32 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 38 H 0.08 0.70 7.72 -2.39 -0.02 0.68 16 39 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -80.01 337.85 5.50 -74.51 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 0.22 Total: 3.55 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 6.48 Total: 15.79 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -4.35 Total: -119.03 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: 1.13 Total: -23.35 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -80.01 5.50 -74.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263923019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.833 kcal (2) G-P(sol) polarization free energy of solvation -80.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds