Wall clock time and date at job start Tue Mar 31 2020 05:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.35248 * 126.69447 * 120.00002 * 4 2 1 6 6 C 1.42023 * 103.95632 * 179.97438 * 5 4 2 7 7 N 1.39491 * 126.89859 * 180.02562 * 6 5 4 8 8 C 1.34781 * 119.99449 * 0.02562 * 7 6 5 9 9 O 1.21583 * 119.99914 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99948 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99987 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47019 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47139 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47129 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99778 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99968 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99800 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00000 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46896 * 60.00073 * 18 16 14 20 20 H 1.48498 * 109.46982 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46962 * 300.00485 * 18 16 14 22 22 N 1.30723 * 106.21464 * 0.02562 * 6 5 4 23 23 O 1.20918 * 111.46993 * 359.72261 * 22 6 5 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.08002 * 128.02060 * 359.95907 * 5 4 2 32 32 H 0.96991 * 120.00463 * 180.02562 * 7 6 5 33 33 H 0.97004 * 119.99963 * 359.97438 * 10 8 7 34 34 H 1.09000 * 109.46738 * 299.99295 * 11 10 8 35 35 H 1.08999 * 109.47218 * 59.99884 * 11 10 8 36 36 H 1.09004 * 109.46811 * 299.99813 * 12 11 10 37 37 H 1.08998 * 109.47609 * 59.99815 * 12 11 10 38 38 H 1.09000 * 109.46753 * 299.99519 * 13 12 11 39 39 H 1.08998 * 109.46946 * 59.99501 * 13 12 11 40 40 H 0.97004 * 119.99677 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8130 -1.8143 1.2641 6 6 2.9915 -2.0655 2.6505 7 7 3.7257 -3.1025 3.2261 8 6 4.3587 -3.9965 2.4408 9 8 4.2901 -3.8987 1.2308 10 7 5.0677 -4.9988 2.9968 11 6 5.7563 -5.9702 2.1432 12 6 6.4813 -6.9944 3.0185 13 6 7.1999 -8.0093 2.1271 14 6 7.9146 -9.0178 2.9892 15 1 7.8619 -8.9422 4.0653 16 6 8.6357 -10.0371 2.4042 17 7 8.7002 -10.1288 1.0938 18 14 9.5222 -11.2867 3.4728 19 1 8.5366 -11.9915 4.3314 20 1 10.2195 -12.2718 2.6076 21 1 10.5155 -10.5899 4.3289 22 7 2.3295 -1.1298 3.2791 23 8 1.7969 -0.3684 2.5053 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 3.2087 -2.3750 0.4301 32 1 3.7807 -3.1803 4.1913 33 1 5.1228 -5.0765 3.9621 34 1 5.0279 -6.4808 1.5133 35 1 6.4807 -5.4523 1.5146 36 1 7.2097 -6.4834 3.6482 37 1 5.7573 -7.5123 3.6474 38 1 6.4712 -8.5203 1.4978 39 1 7.9239 -7.4917 1.4978 40 1 9.2073 -10.8461 0.6823 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266357832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:35 Heat of formation + Delta-G solvation = 11.297808 kcal Electronic energy + Delta-G solvation = -20961.889826 eV Core-core repulsion = 17586.598094 eV Total energy + Delta-G solvation = -3375.291732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.95543 -40.28864 -36.34272 -36.21198 -35.17782 -33.51777 -32.34627 -31.01510 -30.62986 -27.55282 -26.83250 -24.09436 -23.43887 -22.96069 -21.35180 -20.71305 -20.28697 -18.21210 -17.70106 -17.29958 -16.77904 -16.27226 -15.74623 -15.44077 -14.94168 -14.48278 -14.29138 -14.27190 -14.18922 -13.60019 -13.42986 -12.58915 -12.32590 -12.18037 -11.89610 -11.85101 -11.70779 -11.66632 -11.57107 -11.11086 -10.91678 -10.80493 -10.66052 -10.31967 -9.93273 -9.55460 -9.51834 -9.18822 -9.16161 -8.72146 -8.40443 -6.05203 -4.08576 1.32878 2.09740 2.16136 2.98226 3.19029 3.29847 3.34845 3.36576 3.89446 4.16628 4.41612 4.51172 4.68073 4.68453 4.90519 5.05996 5.24737 5.30608 5.32946 5.43269 5.49072 5.55040 5.63103 5.69834 5.80509 5.83746 5.93523 6.07014 6.29628 6.34320 6.52236 6.54552 6.79816 6.92947 7.58664 7.70744 7.74179 7.92898 8.22017 8.32758 8.37806 8.97681 9.55759 11.05994 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.048667 B = 0.002313 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.205766 B =12103.138267 C =12476.678086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.012 4.012 3 C -0.150 4.150 4 C -0.021 4.021 5 C -0.219 4.219 6 C 0.272 3.728 7 N -0.647 5.647 8 C 0.708 3.292 9 O -0.569 6.569 10 N -0.729 5.729 11 C 0.133 3.867 12 C -0.121 4.121 13 C 0.025 3.975 14 C -0.524 4.524 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 N -0.400 5.400 23 O 0.094 5.906 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.192 0.808 32 H 0.414 0.586 33 H 0.398 0.602 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.925 21.082 0.343 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 C -0.207 4.207 4 C -0.085 4.085 5 C -0.242 4.242 6 C 0.021 3.979 7 N -0.301 5.301 8 C 0.408 3.592 9 O -0.444 6.444 10 N -0.383 5.383 11 C 0.011 3.989 12 C -0.159 4.159 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 N -0.117 5.117 23 O 0.035 5.965 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.209 0.791 32 H 0.250 0.750 33 H 0.232 0.768 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.072 21.288 0.318 26.085 hybrid contribution 0.939 -1.328 0.938 1.878 sum -14.132 19.960 1.256 24.489 Atomic orbital electron populations 1.21885 0.93200 1.02777 1.02861 1.19782 0.96639 0.96042 0.90650 1.21886 1.01742 0.94240 1.02864 1.24367 0.99752 0.96960 0.87407 1.22759 1.04829 0.99808 0.96773 1.20186 0.95991 0.90923 0.90775 1.41552 1.51687 1.26568 1.10316 1.15744 0.78833 0.79494 0.85149 1.90873 1.66064 1.75550 1.11941 1.45372 1.53395 1.28807 1.10706 1.21657 0.95453 0.88624 0.93170 1.21920 0.98694 0.96343 0.98989 1.19024 0.95129 0.92523 0.94633 1.21151 1.31080 1.11042 0.92969 0.92681 1.25029 0.96559 0.97896 0.94972 1.69952 1.41569 1.32751 1.08944 0.86631 0.79854 0.81088 0.80254 1.20236 1.21253 1.20241 1.74026 1.16309 1.05381 1.15985 1.84749 1.56258 1.42320 1.13158 0.91815 0.92033 0.91325 0.87783 0.91814 0.92031 0.91326 0.79142 0.75029 0.76781 0.91450 0.91460 0.92588 0.92589 0.96180 0.96187 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.18 37.16 0.34 -0.55 16 2 C -0.01 -0.08 3.34 -91.78 -0.31 -0.39 16 3 C -0.15 -0.89 9.18 37.16 0.34 -0.55 16 4 C -0.02 -0.22 5.98 -35.37 -0.21 -0.44 16 5 C -0.22 -2.84 9.78 -39.20 -0.38 -3.23 16 6 C 0.27 3.71 8.17 -154.83 -1.27 2.44 16 7 N -0.65 -7.99 5.43 -15.82 -0.09 -8.07 16 8 C 0.71 10.42 8.53 -86.92 -0.74 9.67 16 9 O -0.57 -10.13 13.62 5.29 0.07 -10.06 16 10 N -0.73 -9.83 5.56 -65.23 -0.36 -10.19 16 11 C 0.13 2.21 5.67 -4.04 -0.02 2.19 16 12 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 15 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 18 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 N -0.40 -5.35 12.10 31.19 0.38 -4.98 16 23 O 0.09 1.13 11.19 17.06 0.19 1.32 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.10 0.65 8.12 -51.93 -0.42 0.23 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.19 2.66 6.22 -52.49 -0.33 2.34 16 32 H 0.41 3.84 8.84 -40.82 -0.36 3.48 16 33 H 0.40 4.16 8.49 -40.82 -0.35 3.82 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -32.39 342.09 -7.95 -40.34 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.07 Total: 1.95 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.94 Total: -5.96 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.67 Total: -48.97 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.26 Total: -8.74 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.39 -7.95 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266357832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.636 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds