Wall clock time and date at job start Tue Mar 31 2020 05:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 N 1.30272 * 126.28477 * 300.02162 * 4 2 1 6 6 N 1.28662 * 109.38182 * 179.97438 * 5 4 2 7 7 C 1.30275 * 109.38230 * 0.02562 * 6 5 4 8 8 C 1.50696 * 126.28295 * 179.97438 * 7 6 5 9 9 C 1.53008 * 109.47356 * 89.97326 * 8 7 6 10 10 C 1.50696 * 109.47356 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99553 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00073 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99702 * 0.02562 * 12 10 9 14 14 C 1.46496 * 120.00152 * 179.97438 * 12 10 9 15 15 C 1.50697 * 109.46992 * 90.00232 * 14 12 10 16 16 H 1.08002 * 120.00312 * 0.02562 * 15 14 12 17 17 C 1.37876 * 120.00382 * 180.02562 * 15 14 12 18 18 N 1.31517 * 119.99750 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00559 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47112 * 59.99168 * 19 17 15 21 21 H 1.48497 * 109.47470 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46737 * 300.00025 * 19 17 15 23 23 O 1.34360 * 126.27714 * 119.71440 * 4 2 1 24 24 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 27 27 H 1.09000 * 109.47312 * 239.99880 * 2 1 3 28 28 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 31 31 H 1.09003 * 109.47080 * 209.96917 * 8 7 6 32 32 H 1.08996 * 109.47202 * 329.97269 * 8 7 6 33 33 H 1.09001 * 109.46572 * 300.00364 * 9 8 7 34 34 H 1.09004 * 109.46725 * 59.99596 * 9 8 7 35 35 H 1.09007 * 109.47457 * 89.99939 * 13 12 10 36 36 H 1.09004 * 109.46645 * 209.99238 * 13 12 10 37 37 H 1.09003 * 109.47641 * 329.99606 * 13 12 10 38 38 H 1.09000 * 109.47535 * 210.00484 * 14 12 10 39 39 H 1.09004 * 109.47437 * 330.00492 * 14 12 10 40 40 H 0.97003 * 119.99950 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7939 -0.3740 2.4663 6 7 2.3803 -1.2039 3.2555 7 6 3.0131 -2.0978 2.5501 8 6 3.8261 -3.2468 3.0885 9 6 2.9236 -4.4688 3.2709 10 6 3.7366 -5.6180 3.8088 11 8 4.9214 -5.4739 4.0245 12 7 3.1472 -6.8058 4.0500 13 6 1.7162 -6.9798 3.7889 14 6 3.9376 -7.9231 4.5724 15 6 3.9171 -7.8920 6.0789 16 1 3.3696 -7.1176 6.5956 17 6 4.5972 -8.8520 6.7977 18 7 5.2635 -9.7953 6.1685 19 14 4.5712 -8.8139 8.6651 20 1 3.1704 -8.9330 9.1432 21 1 5.3736 -9.9456 9.1946 22 1 5.1496 -7.5319 9.1420 23 8 2.8035 -1.8104 1.2544 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 4.6251 -3.4868 2.3870 32 1 4.2579 -2.9674 4.0495 33 1 2.1245 -4.2288 3.9724 34 1 2.4916 -4.7481 2.3099 35 1 1.5729 -7.3230 2.7642 36 1 1.3080 -7.7177 4.4796 37 1 1.2029 -6.0284 3.9285 38 1 3.5125 -8.8639 4.2226 39 1 4.9659 -7.8363 4.2212 40 1 5.7418 -10.4710 6.6742 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266914678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:50 Heat of formation + Delta-G solvation = -14.162424 kcal Electronic energy + Delta-G solvation = -21470.783964 eV Core-core repulsion = 18094.388194 eV Total energy + Delta-G solvation = -3376.395771 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.34528 -39.13485 -36.43435 -36.20658 -34.98346 -33.88098 -32.58726 -29.94108 -27.93304 -27.68977 -26.16623 -25.17604 -24.50707 -22.84803 -21.73616 -21.12520 -18.53896 -17.49384 -17.32597 -16.60274 -16.50027 -15.74887 -15.33922 -15.11947 -14.95788 -14.32735 -14.06397 -13.70792 -13.60252 -12.74348 -12.70467 -12.49743 -12.43439 -12.28179 -12.24021 -12.12308 -11.91653 -11.83310 -11.75955 -11.68787 -11.25700 -11.19863 -10.93667 -10.85534 -10.57642 -10.17570 -9.67142 -9.62851 -9.00525 -8.44578 -7.70934 -6.05844 -4.10838 1.01958 2.06901 2.27093 3.30099 3.32473 3.36445 3.41101 3.53310 3.93042 4.18506 4.42601 4.45123 4.49532 4.64491 4.82270 4.92620 5.08815 5.14710 5.15297 5.24408 5.28347 5.32704 5.39595 5.41233 5.47704 5.54834 5.66616 5.72590 5.81232 5.83183 5.91719 5.94378 6.17983 6.99745 7.39958 7.48276 7.89989 8.20776 8.21274 8.33626 8.85539 9.01012 9.54355 11.02253 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037489 B = 0.002908 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.697912 B = 9624.945453 C = 9775.525830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.005 3.995 3 C -0.146 4.146 4 C 0.156 3.844 5 N -0.283 5.283 6 N -0.287 5.287 7 C 0.175 3.825 8 C -0.010 4.010 9 C -0.138 4.138 10 C 0.508 3.492 11 O -0.541 6.541 12 N -0.600 5.600 13 C 0.082 3.918 14 C 0.245 3.755 15 C -0.528 4.528 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 O -0.224 6.224 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.033 0.967 39 H 0.045 0.955 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.900 17.052 -14.850 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 C -0.203 4.203 4 C -0.055 4.055 5 N -0.129 5.129 6 N -0.133 5.133 7 C -0.035 4.035 8 C -0.049 4.049 9 C -0.179 4.179 10 C 0.294 3.706 11 O -0.419 6.419 12 N -0.332 5.332 13 C -0.063 4.063 14 C 0.126 3.874 15 C -0.567 4.567 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 O -0.103 6.103 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.618 17.568 -13.665 24.247 hybrid contribution 0.338 -0.810 0.104 0.884 sum -9.280 16.758 -13.561 23.471 Atomic orbital electron populations 1.21875 0.91766 1.03057 1.03637 1.19725 0.96996 0.95338 0.89461 1.21871 1.01650 0.93171 1.03638 1.28022 0.93237 0.85882 0.98369 1.74319 1.19038 1.21184 0.98403 1.74458 1.09812 1.02347 1.26707 1.28228 0.99025 0.99557 0.76724 1.20006 0.95151 0.86201 1.03499 1.21688 0.99412 0.93475 1.03305 1.20009 0.87942 0.83586 0.79089 1.90691 1.15807 1.82413 1.53001 1.48145 1.09313 1.12844 1.62872 1.21672 0.82273 1.01854 1.00456 1.19318 0.91851 0.82357 0.93910 1.21390 1.31967 1.12038 0.91292 0.92456 1.24938 0.94990 0.95255 0.98908 1.69923 1.32604 1.15042 1.35841 0.86546 0.78035 0.77675 0.85104 1.20237 1.21166 1.20107 1.84805 1.54754 1.39421 1.31367 0.92050 0.91003 0.90585 0.88138 0.92101 0.90581 0.91007 0.87578 0.86008 0.88426 0.89105 0.93645 0.90585 0.92421 0.94918 0.93717 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.18 37.16 0.34 -0.53 16 2 C 0.00 0.03 3.39 -91.77 -0.31 -0.28 16 3 C -0.15 -0.87 9.18 37.16 0.34 -0.53 16 4 C 0.16 1.80 6.99 -12.94 -0.09 1.71 16 5 N -0.28 -4.01 12.22 32.55 0.40 -3.61 16 6 N -0.29 -4.43 12.22 32.55 0.40 -4.04 16 7 C 0.18 2.41 7.73 -12.94 -0.10 2.31 16 8 C -0.01 -0.13 5.13 -27.88 -0.14 -0.27 16 9 C -0.14 -1.93 4.23 -27.88 -0.12 -2.05 16 10 C 0.51 10.04 7.67 -10.99 -0.08 9.95 16 11 O -0.54 -12.91 15.56 5.55 0.09 -12.82 16 12 N -0.60 -12.41 2.86 -182.95 -0.52 -12.94 16 13 C 0.08 1.25 10.24 59.85 0.61 1.87 16 14 C 0.24 6.33 5.16 -5.20 -0.03 6.30 16 15 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 16 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 19 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 O -0.22 -2.85 10.87 5.38 0.06 -2.79 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.11 1.35 8.10 -51.93 -0.42 0.93 16 32 H 0.12 1.72 8.10 -51.93 -0.42 1.30 16 33 H 0.10 1.29 7.40 -51.93 -0.38 0.91 16 34 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 37 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 38 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 39 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -34.45 344.60 -4.80 -39.25 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -6.13 Total: -4.22 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 0.00 Total: 4.90 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 1.01 Total: -46.36 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.14 Total: -15.62 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.45 -4.80 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266914678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.089 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds