Wall clock time and date at job start Tue Mar 31 2020 05:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 N 1.30272 * 126.28477 * 300.02162 * 4 2 1 6 6 N 1.28662 * 109.38182 * 179.97438 * 5 4 2 7 7 C 1.30275 * 109.38230 * 0.02562 * 6 5 4 8 8 C 1.50696 * 126.28295 * 179.97438 * 7 6 5 9 9 C 1.53008 * 109.47356 * 89.97326 * 8 7 6 10 10 C 1.50696 * 109.47356 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99553 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00073 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99702 * 0.02562 * 12 10 9 14 14 C 1.46496 * 120.00152 * 179.97438 * 12 10 9 15 15 C 1.50697 * 109.46992 * 90.00232 * 14 12 10 16 16 H 1.08002 * 120.00312 * 0.02562 * 15 14 12 17 17 C 1.37876 * 120.00382 * 180.02562 * 15 14 12 18 18 N 1.31517 * 119.99750 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00559 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47112 * 59.99168 * 19 17 15 21 21 H 1.48497 * 109.47470 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46737 * 300.00025 * 19 17 15 23 23 O 1.34360 * 126.27714 * 119.71440 * 4 2 1 24 24 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 27 27 H 1.09000 * 109.47312 * 239.99880 * 2 1 3 28 28 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 31 31 H 1.09003 * 109.47080 * 209.96917 * 8 7 6 32 32 H 1.08996 * 109.47202 * 329.97269 * 8 7 6 33 33 H 1.09001 * 109.46572 * 300.00364 * 9 8 7 34 34 H 1.09004 * 109.46725 * 59.99596 * 9 8 7 35 35 H 1.09007 * 109.47457 * 89.99939 * 13 12 10 36 36 H 1.09004 * 109.46645 * 209.99238 * 13 12 10 37 37 H 1.09003 * 109.47641 * 329.99606 * 13 12 10 38 38 H 1.09000 * 109.47535 * 210.00484 * 14 12 10 39 39 H 1.09004 * 109.47437 * 330.00492 * 14 12 10 40 40 H 0.97003 * 119.99950 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7939 -0.3740 2.4663 6 7 2.3803 -1.2039 3.2555 7 6 3.0131 -2.0978 2.5501 8 6 3.8261 -3.2468 3.0885 9 6 2.9236 -4.4688 3.2709 10 6 3.7366 -5.6180 3.8088 11 8 4.9214 -5.4739 4.0245 12 7 3.1472 -6.8058 4.0500 13 6 1.7162 -6.9798 3.7889 14 6 3.9376 -7.9231 4.5724 15 6 3.9171 -7.8920 6.0789 16 1 3.3696 -7.1176 6.5956 17 6 4.5972 -8.8520 6.7977 18 7 5.2635 -9.7953 6.1685 19 14 4.5712 -8.8139 8.6651 20 1 3.1704 -8.9330 9.1432 21 1 5.3736 -9.9456 9.1946 22 1 5.1496 -7.5319 9.1420 23 8 2.8035 -1.8104 1.2544 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 4.6251 -3.4868 2.3870 32 1 4.2579 -2.9674 4.0495 33 1 2.1245 -4.2288 3.9724 34 1 2.4916 -4.7481 2.3099 35 1 1.5729 -7.3230 2.7642 36 1 1.3080 -7.7177 4.4796 37 1 1.2029 -6.0284 3.9285 38 1 3.5125 -8.8639 4.2226 39 1 4.9659 -7.8363 4.2212 40 1 5.7418 -10.4710 6.6742 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266914678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:50 Heat of formation + Delta-G solvation = -40.683817 kcal Electronic energy + Delta-G solvation = -21471.934018 eV Core-core repulsion = 18094.388194 eV Total energy + Delta-G solvation = -3377.545825 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.34529 -40.72522 -37.29865 -37.02711 -36.65083 -35.10459 -34.60582 -31.11730 -29.70775 -28.13607 -27.49375 -26.68205 -25.38470 -24.54154 -22.97662 -21.83335 -20.05528 -18.71511 -18.54742 -18.30062 -17.84615 -17.08720 -16.85199 -16.28684 -16.13975 -15.71760 -15.07765 -14.96545 -14.38848 -14.16264 -13.99819 -13.69442 -13.58542 -13.47102 -13.44906 -13.09900 -13.05455 -13.00729 -12.86153 -12.78265 -12.51782 -12.43157 -12.26384 -12.22972 -12.18691 -11.74757 -11.71773 -10.77639 -10.63950 -10.50876 -9.44044 -8.22522 -6.37122 0.05305 1.13039 1.25422 1.37296 1.41273 1.48480 1.78155 2.28195 2.42273 2.76159 3.07278 3.31992 3.60330 3.67737 3.85817 3.99391 4.03169 4.07070 4.21576 4.27315 4.38841 4.51941 4.59235 4.69436 4.76525 4.78476 4.86304 4.86730 4.88015 4.95884 5.02688 5.03300 5.23453 5.28365 5.33035 5.55179 5.82184 6.05862 6.68040 6.76243 7.20585 7.27118 7.43551 8.84319 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037489 B = 0.002908 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.697912 B = 9624.945453 C = 9775.525830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.002 3.998 3 C -0.143 4.143 4 C 0.171 3.829 5 N -0.314 5.314 6 N -0.314 5.314 7 C 0.177 3.823 8 C -0.003 4.003 9 C -0.118 4.118 10 C 0.500 3.500 11 O -0.592 6.592 12 N -0.609 5.609 13 C 0.076 3.924 14 C 0.258 3.742 15 C -0.544 4.544 16 H 0.053 0.947 17 C 0.008 3.992 18 N -0.928 5.928 19 Si 0.966 3.034 20 H -0.261 1.261 21 H -0.278 1.278 22 H -0.278 1.278 23 O -0.226 6.226 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.054 0.946 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.025 0.975 39 H 0.002 0.998 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.787 18.256 -15.933 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 C -0.201 4.201 4 C -0.040 4.040 5 N -0.159 5.159 6 N -0.160 5.160 7 C -0.035 4.035 8 C -0.042 4.042 9 C -0.159 4.159 10 C 0.289 3.711 11 O -0.474 6.474 12 N -0.340 5.340 13 C -0.066 4.066 14 C 0.136 3.864 15 C -0.583 4.583 16 H 0.071 0.929 17 C -0.191 4.191 18 N -0.568 5.568 19 Si 0.790 3.210 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.203 1.203 23 O -0.105 6.105 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.123 0.877 27 H 0.142 0.858 28 H 0.073 0.927 29 H 0.124 0.876 30 H 0.076 0.924 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.043 0.957 39 H 0.020 0.980 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.564 18.793 -14.760 26.547 hybrid contribution 0.909 -1.137 0.335 1.493 sum -10.655 17.657 -14.425 25.167 Atomic orbital electron populations 1.21887 0.90663 1.03053 1.04391 1.20144 0.97758 0.95638 0.88220 1.21888 1.01290 0.92456 1.04425 1.29028 0.91189 0.84788 0.99043 1.74277 1.20387 1.21827 0.99452 1.74402 1.10651 1.03119 1.27872 1.28022 0.98977 0.99374 0.77101 1.19866 0.95157 0.86000 1.03187 1.21573 0.98593 0.90877 1.04824 1.20956 0.87793 0.84321 0.78013 1.90663 1.18355 1.83309 1.55032 1.48163 1.11242 1.11953 1.62656 1.21963 0.79046 1.03694 1.01882 1.18784 0.90499 0.84046 0.93028 1.21687 1.32030 1.11944 0.92619 0.92856 1.25843 0.94481 0.94839 1.03945 1.70039 1.33260 1.15708 1.37757 0.85493 0.78826 0.77570 0.79086 1.18572 1.20332 1.20323 1.84824 1.55044 1.39914 1.30732 0.92429 0.92419 0.87662 0.85799 0.92690 0.87594 0.92418 0.87101 0.87187 0.86891 0.85854 0.90791 0.91525 0.89019 0.95701 0.98022 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.18 71.98 0.66 -0.66 16 2 C 0.00 0.03 3.39 -11.54 -0.04 -0.01 16 3 C -0.14 -1.37 9.18 71.98 0.66 -0.71 16 4 C 0.17 3.66 6.99 88.34 0.62 4.28 16 5 N -0.31 -8.65 12.22 -165.50 -2.02 -10.67 16 6 N -0.31 -9.52 12.22 -165.50 -2.02 -11.54 16 7 C 0.18 4.65 7.73 88.34 0.68 5.33 16 8 C 0.00 -0.08 5.13 29.85 0.15 0.07 16 9 C -0.12 -3.08 4.23 29.85 0.13 -2.96 16 10 C 0.50 19.71 7.67 87.66 0.67 20.38 16 11 O -0.59 -29.14 15.56 -3.05 -0.05 -29.18 16 12 N -0.61 -25.10 2.86 -851.13 -2.43 -27.53 16 13 C 0.08 2.18 10.24 127.77 1.31 3.49 16 14 C 0.26 13.76 5.16 85.63 0.44 14.20 16 15 C -0.54 -31.30 9.39 25.60 0.24 -31.06 16 16 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 17 C 0.01 0.46 5.46 84.65 0.46 0.92 16 18 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 19 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 23 O -0.23 -5.33 10.87 -3.68 -0.04 -5.37 16 24 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 2.77 8.10 -2.39 -0.02 2.75 16 32 H 0.11 3.14 8.10 -2.39 -0.02 3.12 16 33 H 0.11 2.67 7.40 -2.39 -0.02 2.66 16 34 H 0.12 2.47 8.11 -2.39 -0.02 2.45 16 35 H 0.07 1.71 8.14 -2.38 -0.02 1.70 16 36 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 37 H 0.09 2.00 6.44 -2.39 -0.02 1.98 16 38 H 0.02 1.34 8.07 -2.39 -0.02 1.33 16 39 H 0.00 0.10 7.42 -2.38 -0.02 0.08 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -77.64 344.60 2.76 -74.88 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.02 Total: 4.86 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 5.99 Total: 13.29 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -6.19 Total: -105.53 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.09 Total: -34.55 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -77.64 2.76 -74.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266914678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.194 kcal (2) G-P(sol) polarization free energy of solvation -77.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds