Wall clock time and date at job start Tue Mar 31 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46949 * 2 1 4 4 C 1.37091 * 119.99877 * 264.74828 * 3 2 1 5 5 H 1.08001 * 120.00118 * 146.16667 * 4 3 2 6 6 C 1.38953 * 119.99993 * 326.16428 * 4 3 2 7 7 N 1.31406 * 119.99951 * 337.68831 * 6 4 3 8 8 Si 1.86801 * 119.99877 * 157.69038 * 6 4 3 9 9 H 1.48497 * 109.47360 * 89.99997 * 8 6 4 10 10 H 1.48499 * 109.47071 * 210.00236 * 8 6 4 11 11 H 1.48503 * 109.47242 * 329.99947 * 8 6 4 12 12 C 1.34774 * 119.99747 * 84.74854 * 3 2 1 13 13 O 1.21300 * 119.99584 * 180.02562 * 12 3 2 14 14 C 1.50699 * 120.00354 * 359.97438 * 12 3 2 15 15 C 1.52997 * 109.47279 * 179.97438 * 14 12 3 16 16 C 1.50700 * 109.47458 * 180.02562 * 15 14 12 17 17 N 1.30276 * 126.28440 * 89.97184 * 16 15 14 18 18 N 1.28668 * 109.38204 * 180.02562 * 17 16 15 19 19 C 1.30284 * 109.37948 * 0.02562 * 18 17 16 20 20 C 1.50699 * 126.27905 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.47191 * 300.02419 * 20 19 18 22 22 C 1.53001 * 109.47041 * 60.02813 * 20 19 18 23 23 O 1.34363 * 126.27956 * 270.26765 * 16 15 14 24 24 H 1.09003 * 109.47500 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46917 * 300.00218 * 1 2 3 26 26 H 1.09001 * 109.47120 * 59.99487 * 1 2 3 27 27 H 1.08998 * 109.46971 * 240.00255 * 2 1 3 28 28 H 1.09003 * 109.46826 * 119.99796 * 2 1 3 29 29 H 0.97001 * 119.99689 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46758 * 60.00376 * 14 12 3 31 31 H 1.08997 * 109.47060 * 300.00228 * 14 12 3 32 32 H 1.08997 * 109.47237 * 60.00225 * 15 14 12 33 33 H 1.09006 * 109.47402 * 299.99919 * 15 14 12 34 34 H 1.08997 * 109.46871 * 180.02562 * 20 19 18 35 35 H 1.09006 * 109.46976 * 60.00274 * 21 20 19 36 36 H 1.09000 * 109.46791 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.47315 * 299.99927 * 21 20 19 38 38 H 1.08996 * 109.47510 * 179.97438 * 22 20 19 39 39 H 1.09006 * 109.47138 * 299.99733 * 22 20 19 40 40 H 1.08998 * 109.47320 * 59.99238 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3492 1.9913 -1.1823 5 1 2.1814 3.0506 -1.3088 6 6 2.9006 1.2466 -2.2178 7 7 3.5051 0.1088 -1.9593 8 14 2.7826 1.8631 -3.9772 9 1 3.9649 2.7067 -4.2865 10 1 2.7443 0.7050 -4.9059 11 1 1.5448 2.6676 -4.1379 12 6 2.1422 2.0522 1.1623 13 8 2.5461 3.1960 1.1622 14 6 1.7779 1.3818 2.4619 15 6 2.0096 2.3544 3.6200 16 6 1.6459 1.6838 4.9196 17 7 2.4456 0.9913 5.6801 18 7 1.7972 0.5676 6.7075 19 6 0.5616 0.9749 6.6372 20 6 -0.5279 0.6954 7.6402 21 6 -0.7373 -0.8155 7.7580 22 6 -0.1242 1.2622 9.0028 23 8 0.4360 1.6858 5.5040 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8897 -0.4111 -2.6823 30 1 2.3993 0.4971 2.6010 31 1 0.7284 1.0885 2.4377 32 1 1.3886 3.2393 3.4811 33 1 3.0593 2.6473 3.6440 34 1 -1.4542 1.1661 7.3109 35 1 0.1891 -1.2862 8.0873 36 1 -1.5257 -1.0175 8.4831 37 1 -1.0249 -1.2193 6.7872 38 1 -0.9123 1.0606 9.7282 39 1 0.8022 0.7916 9.3321 40 1 0.0251 2.3387 8.9188 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266942045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:34 Heat of formation + Delta-G solvation = -10.892473 kcal Electronic energy + Delta-G solvation = -21952.935098 eV Core-core repulsion = 18576.681123 eV Total energy + Delta-G solvation = -3376.253975 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.17148 -38.72292 -36.30472 -36.04351 -35.18286 -33.54813 -32.01506 -29.62122 -29.45106 -27.58984 -26.09065 -24.44748 -24.13180 -22.37988 -21.76256 -20.99368 -18.83931 -17.36206 -17.14448 -16.85002 -16.17913 -15.57907 -15.07732 -14.86875 -14.58934 -14.24503 -13.78950 -13.59511 -13.15020 -12.89579 -12.63074 -12.59281 -12.30135 -12.29684 -12.06454 -11.75663 -11.74040 -11.62210 -11.61433 -11.57674 -11.09029 -10.99705 -10.96470 -10.70785 -10.37857 -10.33201 -10.10105 -9.43908 -8.97931 -8.47858 -7.53915 -6.36646 -3.97686 1.19474 2.24587 2.44086 3.14917 3.24367 3.29567 3.73780 3.83547 4.12619 4.29361 4.58007 4.60422 4.76489 4.82318 5.00264 5.11683 5.23411 5.24456 5.32131 5.42397 5.42661 5.52338 5.54304 5.62265 5.76610 5.80919 5.82465 5.92550 5.97582 6.11561 6.20988 6.25685 6.33885 6.49671 6.84800 7.23531 7.56657 8.19438 8.38145 8.45766 9.13650 9.37158 9.95065 10.67026 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036559 B = 0.003363 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.693002 B = 8324.527057 C = 8621.146361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.436 5.436 4 C -0.309 4.309 5 H 0.093 0.907 6 C 0.036 3.964 7 N -0.867 5.867 8 Si 0.918 3.082 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.458 3.542 13 O -0.584 6.584 14 C -0.131 4.131 15 C -0.007 4.007 16 C 0.180 3.820 17 N -0.290 5.290 18 N -0.283 5.283 19 C 0.151 3.849 20 C 0.006 3.994 21 C -0.146 4.146 22 C -0.145 4.145 23 O -0.225 6.225 24 H 0.050 0.950 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.115 0.885 28 H 0.048 0.952 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.340 -2.615 15.331 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.031 4.031 3 N -0.154 5.154 4 C -0.437 4.437 5 H 0.111 0.889 6 C -0.168 4.168 7 N -0.505 5.505 8 Si 0.744 3.256 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.246 3.754 13 O -0.469 6.469 14 C -0.173 4.173 15 C -0.046 4.046 16 C -0.031 4.031 17 N -0.136 5.136 18 N -0.130 5.130 19 C -0.060 4.060 20 C -0.014 4.014 21 C -0.203 4.203 22 C -0.203 4.203 23 O -0.104 6.104 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.132 0.868 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.137 0.863 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.958 -2.796 15.628 18.229 hybrid contribution -1.056 0.570 -1.342 1.800 sum -10.014 -2.226 14.286 17.587 Atomic orbital electron populations 1.22209 0.98195 1.00385 1.01469 1.21628 0.91729 0.85469 1.04280 1.43505 1.55219 1.11832 1.04859 1.19458 1.39990 0.95527 0.88721 0.88895 1.25343 0.94446 0.96466 1.00589 1.69922 1.32364 1.15247 1.33007 0.86084 0.79090 0.78380 0.82064 1.20237 1.20794 1.19389 1.19988 0.82910 0.87975 0.84505 1.90531 1.50915 1.18655 1.86780 1.21637 1.03060 0.99226 0.93338 1.20024 1.05128 0.97393 0.82067 1.28396 0.77968 0.97988 0.98704 1.74452 1.26787 1.11997 1.00406 1.74300 1.02264 1.20048 1.16366 1.27972 0.97002 0.93636 0.87383 1.19692 0.92467 0.98773 0.90505 1.21871 1.03288 0.92305 1.02861 1.21866 1.03008 1.01355 0.94035 1.84803 1.36168 1.57978 1.31460 0.93062 0.94031 0.92323 0.86764 0.93360 0.92147 0.89239 0.90010 0.87919 0.86305 0.88222 0.91017 0.90681 0.92032 0.90679 0.91029 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.15 37.16 0.38 -2.53 16 2 C 0.09 1.99 5.43 -4.04 -0.02 1.97 16 3 N -0.44 -10.83 2.56 -114.81 -0.29 -11.12 16 4 C -0.31 -8.44 8.98 -14.94 -0.13 -8.58 16 5 H 0.09 2.65 7.70 -52.49 -0.40 2.25 16 6 C 0.04 0.93 4.92 -17.47 -0.09 0.84 16 7 N -0.87 -23.09 11.33 55.50 0.63 -22.46 16 8 Si 0.92 20.29 29.61 -169.99 -5.03 15.26 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 12 C 0.46 10.82 7.59 -10.99 -0.08 10.74 16 13 O -0.58 -15.59 15.81 5.54 0.09 -15.51 16 14 C -0.13 -2.37 4.29 -27.89 -0.12 -2.49 16 15 C -0.01 -0.12 5.13 -27.88 -0.14 -0.26 16 16 C 0.18 2.89 7.73 -12.94 -0.10 2.79 16 17 N -0.29 -5.07 12.22 32.55 0.40 -4.67 16 18 N -0.28 -4.49 12.22 32.55 0.40 -4.10 16 19 C 0.15 2.01 6.99 -12.94 -0.09 1.92 16 20 C 0.01 0.05 3.39 -91.77 -0.31 -0.26 16 21 C -0.15 -1.07 9.18 37.16 0.34 -0.73 16 22 C -0.14 -1.02 9.18 37.16 0.34 -0.68 16 23 O -0.22 -3.32 10.87 5.38 0.06 -3.26 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.68 6.59 -51.93 -0.34 0.34 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.11 2.71 5.34 -51.93 -0.28 2.44 16 28 H 0.05 0.95 6.66 -51.93 -0.35 0.61 16 29 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.09 1.60 7.41 -51.93 -0.38 1.21 16 31 H 0.08 1.34 6.53 -51.93 -0.34 1.00 16 32 H 0.10 1.60 8.10 -51.93 -0.42 1.18 16 33 H 0.12 2.00 8.10 -51.93 -0.42 1.57 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 336.92 15.07 5.08 5.08 Total: -1.00 -31.88 336.92 -4.58 -36.46 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.87 Total: 1.59 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -0.03 Total: 2.72 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 1.13 Total: -42.35 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.15 Total: -18.76 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.88 -4.58 -36.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266942045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.571 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds