Wall clock time and date at job start Tue Mar 31 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46949 * 2 1 4 4 C 1.37091 * 119.99877 * 264.74828 * 3 2 1 5 5 H 1.08001 * 120.00118 * 146.16667 * 4 3 2 6 6 C 1.38953 * 119.99993 * 326.16428 * 4 3 2 7 7 N 1.31406 * 119.99951 * 337.68831 * 6 4 3 8 8 Si 1.86801 * 119.99877 * 157.69038 * 6 4 3 9 9 H 1.48497 * 109.47360 * 89.99997 * 8 6 4 10 10 H 1.48499 * 109.47071 * 210.00236 * 8 6 4 11 11 H 1.48503 * 109.47242 * 329.99947 * 8 6 4 12 12 C 1.34774 * 119.99747 * 84.74854 * 3 2 1 13 13 O 1.21300 * 119.99584 * 180.02562 * 12 3 2 14 14 C 1.50699 * 120.00354 * 359.97438 * 12 3 2 15 15 C 1.52997 * 109.47279 * 179.97438 * 14 12 3 16 16 C 1.50700 * 109.47458 * 180.02562 * 15 14 12 17 17 N 1.30276 * 126.28440 * 89.97184 * 16 15 14 18 18 N 1.28668 * 109.38204 * 180.02562 * 17 16 15 19 19 C 1.30284 * 109.37948 * 0.02562 * 18 17 16 20 20 C 1.50699 * 126.27905 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.47191 * 300.02419 * 20 19 18 22 22 C 1.53001 * 109.47041 * 60.02813 * 20 19 18 23 23 O 1.34363 * 126.27956 * 270.26765 * 16 15 14 24 24 H 1.09003 * 109.47500 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46917 * 300.00218 * 1 2 3 26 26 H 1.09001 * 109.47120 * 59.99487 * 1 2 3 27 27 H 1.08998 * 109.46971 * 240.00255 * 2 1 3 28 28 H 1.09003 * 109.46826 * 119.99796 * 2 1 3 29 29 H 0.97001 * 119.99689 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46758 * 60.00376 * 14 12 3 31 31 H 1.08997 * 109.47060 * 300.00228 * 14 12 3 32 32 H 1.08997 * 109.47237 * 60.00225 * 15 14 12 33 33 H 1.09006 * 109.47402 * 299.99919 * 15 14 12 34 34 H 1.08997 * 109.46871 * 180.02562 * 20 19 18 35 35 H 1.09006 * 109.46976 * 60.00274 * 21 20 19 36 36 H 1.09000 * 109.46791 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.47315 * 299.99927 * 21 20 19 38 38 H 1.08996 * 109.47510 * 179.97438 * 22 20 19 39 39 H 1.09006 * 109.47138 * 299.99733 * 22 20 19 40 40 H 1.08998 * 109.47320 * 59.99238 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3492 1.9913 -1.1823 5 1 2.1814 3.0506 -1.3088 6 6 2.9006 1.2466 -2.2178 7 7 3.5051 0.1088 -1.9593 8 14 2.7826 1.8631 -3.9772 9 1 3.9649 2.7067 -4.2865 10 1 2.7443 0.7050 -4.9059 11 1 1.5448 2.6676 -4.1379 12 6 2.1422 2.0522 1.1623 13 8 2.5461 3.1960 1.1622 14 6 1.7779 1.3818 2.4619 15 6 2.0096 2.3544 3.6200 16 6 1.6459 1.6838 4.9196 17 7 2.4456 0.9913 5.6801 18 7 1.7972 0.5676 6.7075 19 6 0.5616 0.9749 6.6372 20 6 -0.5279 0.6954 7.6402 21 6 -0.7373 -0.8155 7.7580 22 6 -0.1242 1.2622 9.0028 23 8 0.4360 1.6858 5.5040 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8897 -0.4111 -2.6823 30 1 2.3993 0.4971 2.6010 31 1 0.7284 1.0885 2.4377 32 1 1.3886 3.2393 3.4811 33 1 3.0593 2.6473 3.6440 34 1 -1.4542 1.1661 7.3109 35 1 0.1891 -1.2862 8.0873 36 1 -1.5257 -1.0175 8.4831 37 1 -1.0249 -1.2193 6.7872 38 1 -0.9123 1.0606 9.7282 39 1 0.8022 0.7916 9.3321 40 1 0.0251 2.3387 8.9188 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266942045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:34 Heat of formation + Delta-G solvation = -34.208463 kcal Electronic energy + Delta-G solvation = -21953.946156 eV Core-core repulsion = 18576.681123 eV Total energy + Delta-G solvation = -3377.265032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.34156 -40.55330 -37.30244 -37.14477 -36.88202 -34.97390 -33.91096 -31.22187 -30.80622 -28.13582 -27.74081 -25.88434 -25.35887 -23.96979 -23.12253 -21.83611 -20.61376 -18.84114 -18.47568 -18.28413 -17.79817 -17.02977 -16.55592 -16.18389 -16.00113 -15.61308 -15.06722 -14.75097 -14.50547 -14.34253 -14.12501 -13.61973 -13.57133 -13.40937 -13.35653 -13.04426 -13.04020 -12.86151 -12.84138 -12.65478 -12.49604 -12.30531 -12.26668 -12.14380 -12.07976 -11.79622 -11.72592 -10.90858 -10.65416 -10.34842 -9.48456 -8.34923 -6.04208 0.05627 1.14160 1.25443 1.37394 1.42810 1.55239 2.00188 2.29285 2.65751 3.01126 3.10049 3.35502 3.67084 3.78095 3.97509 3.99482 4.05393 4.10798 4.22336 4.23794 4.37912 4.52266 4.59838 4.61905 4.74956 4.76624 4.86474 4.87115 4.87790 4.90501 5.03080 5.03646 5.28418 5.30636 5.32750 5.46259 5.57237 6.19611 6.50790 7.16216 7.20434 7.46262 8.03707 8.67339 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036559 B = 0.003363 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.693002 B = 8324.527057 C = 8621.146361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.091 3.909 3 N -0.450 5.450 4 C -0.343 4.343 5 H 0.068 0.932 6 C 0.003 3.997 7 N -0.888 5.888 8 Si 0.980 3.020 9 H -0.279 1.279 10 H -0.268 1.268 11 H -0.266 1.266 12 C 0.448 3.552 13 O -0.625 6.625 14 C -0.114 4.114 15 C 0.003 3.997 16 C 0.177 3.823 17 N -0.316 5.316 18 N -0.314 5.314 19 C 0.169 3.831 20 C 0.003 3.997 21 C -0.143 4.143 22 C -0.142 4.142 23 O -0.226 6.226 24 H 0.083 0.917 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.274 0.726 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.054 0.946 38 H 0.107 0.893 39 H 0.057 0.943 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.429 -3.520 16.276 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.032 4.032 3 N -0.168 5.168 4 C -0.471 4.471 5 H 0.086 0.914 6 C -0.200 4.200 7 N -0.525 5.525 8 Si 0.804 3.196 9 H -0.205 1.205 10 H -0.193 1.193 11 H -0.190 1.190 12 C 0.237 3.763 13 O -0.512 6.512 14 C -0.155 4.155 15 C -0.036 4.036 16 C -0.034 4.034 17 N -0.162 5.162 18 N -0.159 5.159 19 C -0.043 4.043 20 C -0.017 4.017 21 C -0.200 4.200 22 C -0.199 4.199 23 O -0.106 6.106 24 H 0.101 0.899 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.142 0.858 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.073 0.927 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.051 -3.741 16.591 20.282 hybrid contribution -0.416 0.828 -1.540 1.797 sum -11.466 -2.914 15.050 19.144 Atomic orbital electron populations 1.22101 0.95156 1.02475 1.01445 1.21721 0.94210 0.83534 1.03757 1.43788 1.55374 1.13012 1.04667 1.19430 1.41902 0.95025 0.90745 0.91399 1.26075 0.93501 0.96547 1.03848 1.69991 1.32305 1.15956 1.34278 0.85147 0.78829 0.78199 0.77443 1.20470 1.19263 1.19049 1.20826 0.81918 0.87600 0.85938 1.90493 1.52538 1.20532 1.87649 1.21467 1.04360 0.98956 0.90725 1.19814 1.04804 0.97205 0.81793 1.28071 0.78464 0.98261 0.98611 1.74398 1.27924 1.12624 1.01221 1.74260 1.03545 1.21617 1.16454 1.29083 0.97280 0.91065 0.86835 1.20155 0.91767 0.99963 0.89834 1.21890 1.03688 0.91004 1.03433 1.21885 1.03547 1.00754 0.93757 1.84819 1.35463 1.58300 1.31980 0.89851 0.92629 0.93750 0.89140 0.91911 0.91630 0.88858 0.87644 0.87219 0.87316 0.85801 0.92409 0.87467 0.92651 0.87466 0.92403 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 10.15 71.98 0.73 -4.43 16 2 C 0.09 3.85 5.43 86.38 0.47 4.32 16 3 N -0.45 -22.68 2.56 -635.52 -1.63 -24.31 16 4 C -0.34 -19.22 8.98 84.04 0.75 -18.47 16 5 H 0.07 4.05 7.70 -2.91 -0.02 4.03 16 6 C 0.00 0.15 4.92 84.93 0.42 0.57 16 7 N -0.89 -47.49 11.33 21.66 0.25 -47.24 16 8 Si 0.98 41.79 29.61 68.60 2.03 43.83 16 9 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 10 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 C 0.45 21.43 7.59 87.66 0.67 22.09 16 13 O -0.62 -34.37 15.81 -3.09 -0.05 -34.42 16 14 C -0.11 -4.05 4.29 29.85 0.13 -3.92 16 15 C 0.00 0.09 5.13 29.85 0.15 0.24 16 16 C 0.18 5.58 7.73 88.34 0.68 6.26 16 17 N -0.32 -10.97 12.22 -165.50 -2.02 -12.99 16 18 N -0.31 -9.76 12.22 -165.49 -2.02 -11.78 16 19 C 0.17 4.20 6.99 88.34 0.62 4.82 16 20 C 0.00 0.04 3.39 -11.54 -0.04 0.00 16 21 C -0.14 -1.69 9.18 71.98 0.66 -1.03 16 22 C -0.14 -1.63 9.18 71.98 0.66 -0.97 16 23 O -0.23 -6.31 10.87 -3.65 -0.04 -6.35 16 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.05 1.69 6.59 -2.39 -0.02 1.68 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.09 4.30 5.34 -2.39 -0.01 4.29 16 28 H 0.06 2.41 6.66 -2.39 -0.02 2.40 16 29 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 30 H 0.09 3.26 7.41 -2.39 -0.02 3.24 16 31 H 0.11 3.23 6.53 -2.39 -0.02 3.22 16 32 H 0.11 3.38 8.10 -2.39 -0.02 3.36 16 33 H 0.11 3.74 8.10 -2.38 -0.02 3.72 16 34 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -70.88 336.92 3.45 -67.43 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 1.04 Total: 16.36 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 5.90 Total: 9.49 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -5.43 Total: -96.32 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.09 Total: -40.77 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.83 kcal Total: -70.88 3.45 -67.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266942045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.217 kcal (2) G-P(sol) polarization free energy of solvation -70.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds