Wall clock time and date at job start Tue Mar 31 2020 05:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47170 * 2 1 4 4 H 1.08997 * 109.47096 * 304.99971 * 3 2 1 5 5 C 1.50703 * 109.46754 * 185.00155 * 3 2 1 6 6 H 1.07998 * 119.99663 * 239.99862 * 5 3 2 7 7 C 1.37873 * 120.00185 * 60.00296 * 5 3 2 8 8 N 1.31524 * 119.99981 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00120 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47385 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47433 * 119.99718 * 9 7 5 12 12 H 1.48506 * 109.47181 * 239.99665 * 9 7 5 13 13 N 1.46498 * 109.47165 * 65.00352 * 3 2 1 14 14 C 1.34775 * 119.99627 * 274.99703 * 13 3 2 15 15 O 1.21575 * 120.00311 * 0.02562 * 14 13 3 16 16 N 1.34780 * 119.99884 * 180.02562 * 14 13 3 17 17 C 1.39486 * 120.00142 * 180.02562 * 16 14 13 18 18 C 1.42027 * 126.89500 * 359.97438 * 17 16 14 19 19 C 1.35238 * 103.95573 * 179.97438 * 18 17 16 20 20 C 1.50708 * 126.69146 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47141 * 120.00192 * 20 19 18 22 22 C 1.53006 * 109.46735 * 239.99972 * 20 19 18 23 23 O 1.34085 * 106.61508 * 0.26592 * 19 18 17 24 24 N 1.20917 * 111.74197 * 359.52222 * 23 19 18 25 25 H 1.08996 * 109.47419 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46901 * 299.99933 * 1 2 3 27 27 H 1.08991 * 109.47006 * 59.99625 * 1 2 3 28 28 H 1.08998 * 109.46822 * 239.99791 * 2 1 3 29 29 H 1.09003 * 109.47041 * 119.99967 * 2 1 3 30 30 H 0.97002 * 119.99897 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00057 * 95.00080 * 13 3 2 32 32 H 0.97008 * 119.99900 * 359.97438 * 16 14 13 33 33 H 1.08001 * 128.02206 * 359.97438 * 18 17 16 34 34 H 1.08996 * 109.46993 * 359.97438 * 20 19 18 35 35 H 1.09002 * 109.47153 * 299.99670 * 21 20 19 36 36 H 1.09001 * 109.46832 * 179.97438 * 21 20 19 37 37 H 1.09004 * 109.47261 * 59.99842 * 21 20 19 38 38 H 1.08993 * 109.46955 * 300.00223 * 22 20 19 39 39 H 1.09000 * 109.47050 * 60.00052 * 22 20 19 40 40 H 1.09001 * 109.47002 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8887 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3366 -2.1730 9 14 6.0049 0.8811 -1.3819 10 1 6.5988 1.5460 -0.1943 11 1 6.4970 -0.5177 -1.4631 12 1 6.3990 1.6165 -2.6104 13 7 1.6526 2.0975 1.2518 14 6 0.4353 2.6644 1.3669 15 8 -0.3413 2.6319 0.4322 16 7 0.0790 3.2674 2.5184 17 6 -1.1811 3.8537 2.6378 18 6 -2.1967 3.9014 1.6462 19 6 -3.2081 4.5686 2.2471 20 6 -4.5476 4.9060 1.6445 21 6 -5.6581 4.2627 2.4774 22 6 -4.7335 6.4247 1.6328 23 8 -2.7846 4.8760 3.4816 24 7 -1.6642 4.4692 3.6850 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0619 -2.9496 31 1 2.2721 2.1231 1.9978 32 1 0.6985 3.2931 3.2645 33 1 -2.1681 3.4984 0.6447 34 1 -4.5926 4.5270 0.6235 35 1 -5.5257 3.1808 2.4857 36 1 -6.6269 4.5071 2.0418 37 1 -5.6129 4.6422 3.4982 38 1 -4.6883 6.8041 2.6536 39 1 -3.9423 6.8831 1.0395 40 1 -5.7021 6.6688 1.1966 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274592678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:41 Heat of formation + Delta-G solvation = 20.590351 kcal Electronic energy + Delta-G solvation = -22244.614413 eV Core-core repulsion = 18869.725636 eV Total energy + Delta-G solvation = -3374.888777 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.64329 -39.78437 -36.13230 -35.99223 -34.60800 -32.77942 -31.82109 -30.66640 -30.27216 -27.38742 -27.01299 -23.76548 -23.17240 -22.90548 -21.30319 -20.02995 -19.60481 -18.19438 -17.39881 -16.98955 -16.43955 -15.95112 -15.26622 -15.09173 -14.89203 -14.30827 -13.98103 -13.59782 -13.42736 -13.12349 -12.73054 -12.56021 -12.41554 -11.71842 -11.62549 -11.48576 -11.47824 -11.31568 -11.21654 -11.00061 -10.87770 -10.86291 -10.37496 -10.24805 -9.69756 -9.51673 -9.25770 -9.10381 -8.57846 -8.54156 -7.90985 -6.18258 -4.27707 1.62006 2.47056 2.72155 3.20571 3.26736 3.29114 3.31687 3.81051 4.25923 4.34282 4.71351 4.78348 4.86753 4.94885 5.13813 5.25548 5.33384 5.40078 5.59062 5.59212 5.69220 5.81353 6.00290 6.02441 6.26277 6.35505 6.42055 6.59329 6.74164 6.86769 7.03210 7.23517 7.28677 7.35461 7.58791 7.76934 7.87101 8.11526 8.50030 8.64775 8.74464 9.09591 9.39933 10.87140 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033475 B = 0.003532 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.250237 B = 7925.882749 C = 8175.372560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.712 5.712 14 C 0.701 3.299 15 O -0.570 6.570 16 N -0.652 5.652 17 C 0.279 3.721 18 C -0.215 4.215 19 C -0.029 4.029 20 C -0.010 4.010 21 C -0.149 4.149 22 C -0.149 4.149 23 O 0.088 5.912 24 N -0.408 5.408 25 H 0.022 0.978 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.409 0.591 33 H 0.192 0.808 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 7.056 8.115 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.363 5.363 14 C 0.400 3.600 15 O -0.446 6.446 16 N -0.307 5.307 17 C 0.029 3.971 18 C -0.238 4.238 19 C -0.093 4.093 20 C -0.030 4.030 21 C -0.206 4.206 22 C -0.207 4.207 23 O 0.031 5.969 24 N -0.127 5.127 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.245 0.755 33 H 0.209 0.791 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.325 7.149 8.190 17.197 hybrid contribution 1.721 -0.385 -0.105 1.767 sum -11.603 6.764 8.084 15.676 Atomic orbital electron populations 1.21824 0.98274 0.98059 1.01212 1.21972 0.92712 0.99748 1.02401 1.18797 0.94198 0.88931 0.79593 0.93007 1.21244 0.90514 1.39200 1.06425 0.91959 1.24873 0.98717 0.94719 0.95317 1.69903 1.35098 1.37470 1.09341 0.86377 0.84663 0.77804 0.78152 1.19747 1.20841 1.20838 1.45829 1.12755 1.58151 1.19580 1.15895 0.83948 0.78684 0.81427 1.90828 1.51657 1.64220 1.37930 1.41846 1.13149 1.58414 1.17304 1.20241 0.88659 0.96805 0.91432 1.22798 0.91209 1.06452 1.03380 1.24313 0.98516 1.00397 0.86035 1.19740 0.86600 0.97261 0.99369 1.21876 0.97357 1.01132 1.00264 1.21878 1.02314 0.93605 1.02856 1.84723 1.22564 1.59753 1.29873 1.73991 0.96229 1.20638 1.21850 0.95858 0.94397 0.93050 0.88098 0.94976 0.92528 0.77949 0.75534 0.79121 0.87906 0.92065 0.91506 0.91905 0.91897 0.92055 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.29 6.94 2.24 -69.08 -0.15 6.78 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.70 8.73 -34.44 -0.30 -14.00 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.01 11.29 55.43 0.63 -23.39 16 9 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.71 -14.22 5.03 -59.81 -0.30 -14.53 16 14 C 0.70 13.75 7.10 -86.92 -0.62 13.13 16 15 O -0.57 -12.62 10.75 5.30 0.06 -12.56 16 16 N -0.65 -10.73 5.43 -15.82 -0.09 -10.82 16 17 C 0.28 4.72 8.18 -154.84 -1.27 3.46 16 18 C -0.22 -3.46 9.78 -39.20 -0.38 -3.84 16 19 C -0.03 -0.38 5.98 -35.37 -0.21 -0.59 16 20 C -0.01 -0.10 3.34 -91.77 -0.31 -0.40 16 21 C -0.15 -1.17 9.18 37.16 0.34 -0.83 16 22 C -0.15 -1.18 9.18 37.16 0.34 -0.84 16 23 O 0.09 1.28 11.19 17.06 0.19 1.47 16 24 N -0.41 -6.59 12.10 31.19 0.38 -6.22 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 27 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.39 6.68 8.55 -40.82 -0.35 6.33 16 32 H 0.41 5.53 8.84 -40.82 -0.36 5.17 16 33 H 0.19 3.30 6.22 -52.49 -0.33 2.98 16 34 H 0.10 0.88 8.12 -51.93 -0.42 0.46 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 329.51 15.07 4.97 4.97 Total: -1.00 -29.32 329.51 -7.46 -36.78 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -5.78 Total: 10.44 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.48 Total: -1.32 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.62 Total: -54.95 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.25 Total: -11.09 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.32 -7.46 -36.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274592678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.368 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds