Wall clock time and date at job start Tue Mar 31 2020 05:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46812 * 2 1 4 4 H 1.09005 * 109.47646 * 54.99893 * 3 2 1 5 5 C 1.50698 * 109.47028 * 175.00228 * 3 2 1 6 6 H 1.08004 * 120.00052 * 120.00133 * 5 3 2 7 7 C 1.37879 * 119.99816 * 299.99122 * 5 3 2 8 8 N 1.31514 * 120.00151 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00024 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47099 * 60.00550 * 9 7 5 11 11 H 1.48495 * 109.47243 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47430 * 300.00553 * 9 7 5 13 13 N 1.46504 * 109.47068 * 294.99554 * 3 2 1 14 14 C 1.34784 * 119.99635 * 85.00496 * 13 3 2 15 15 O 1.21575 * 120.00249 * 359.97438 * 14 13 3 16 16 N 1.34775 * 119.99776 * 180.02562 * 14 13 3 17 17 C 1.39483 * 119.99864 * 179.97438 * 16 14 13 18 18 C 1.42027 * 126.89778 * 359.97438 * 17 16 14 19 19 C 1.35243 * 103.96005 * 179.97438 * 18 17 16 20 20 C 1.50697 * 126.69230 * 180.02562 * 19 18 17 21 21 C 1.53006 * 109.47239 * 119.99825 * 20 19 18 22 22 C 1.52999 * 109.47283 * 239.99388 * 20 19 18 23 23 O 1.34089 * 106.61195 * 0.25712 * 19 18 17 24 24 N 1.20917 * 111.74367 * 359.53235 * 23 19 18 25 25 H 1.09006 * 109.47174 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47808 * 299.99702 * 1 2 3 27 27 H 1.08994 * 109.47726 * 60.00481 * 1 2 3 28 28 H 1.09002 * 109.47114 * 239.99674 * 2 1 3 29 29 H 1.08998 * 109.46960 * 120.00010 * 2 1 3 30 30 H 0.96995 * 120.00091 * 179.97438 * 8 7 5 31 31 H 0.96997 * 120.00589 * 265.00331 * 13 3 2 32 32 H 0.96997 * 120.00448 * 359.97438 * 16 14 13 33 33 H 1.08006 * 128.01709 * 359.94047 * 18 17 16 34 34 H 1.09000 * 109.47374 * 359.97438 * 20 19 18 35 35 H 1.09001 * 109.46801 * 179.97438 * 21 20 19 36 36 H 1.09001 * 109.46998 * 299.99373 * 21 20 19 37 37 H 1.09000 * 109.47050 * 59.99664 * 21 20 19 38 38 H 1.08993 * 109.47839 * 179.97438 * 22 20 19 39 39 H 1.09000 * 109.47160 * 300.00430 * 22 20 19 40 40 H 1.09002 * 109.46719 * 60.00151 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1432 0.8786 1.2280 8 7 3.4062 0.3369 2.1730 9 14 6.0048 0.8802 1.3811 10 1 6.5003 2.2802 1.3807 11 1 6.3977 0.2160 2.6498 12 1 6.5966 0.1453 0.2343 13 7 1.6524 2.0974 -1.2519 14 6 0.4350 2.6643 -1.3670 15 8 -0.3416 2.6318 -0.4322 16 7 0.0783 3.2664 -2.5189 17 6 -1.1817 3.8526 -2.6382 18 6 -2.1974 3.9003 -1.6466 19 6 -3.2085 4.5685 -2.2470 20 6 -4.5473 4.9072 -1.6439 21 6 -4.7318 6.4260 -1.6321 22 6 -5.6588 4.2650 -2.4763 23 8 -2.7891 4.8662 -3.4853 24 7 -1.6646 4.4690 -3.6851 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3635 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0614 2.9496 31 1 2.2718 2.1231 -1.9979 32 1 0.6977 3.2921 -3.2648 33 1 -2.1692 3.4961 -0.6454 34 1 -4.5926 4.5274 -0.6232 35 1 -5.7004 6.6709 -1.1963 36 1 -3.9400 6.8836 -1.0390 37 1 -4.6867 6.8054 -2.6530 38 1 -6.6272 4.5095 -2.0399 39 1 -5.6137 4.6444 -3.4972 40 1 -5.5274 3.1829 -2.4847 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274592680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:44 Heat of formation + Delta-G solvation = 2.896590 kcal Electronic energy + Delta-G solvation = -22245.298126 eV Core-core repulsion = 18869.642089 eV Total energy + Delta-G solvation = -3375.656037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.88209 -41.37113 -37.65081 -36.94080 -36.22131 -34.51583 -33.45129 -32.22643 -31.49436 -28.92056 -28.00165 -25.38675 -24.56420 -24.10729 -22.79473 -21.44550 -21.24503 -19.83611 -18.63756 -18.11930 -18.01736 -17.59531 -16.91087 -16.59699 -16.16032 -15.74620 -15.25211 -14.98273 -14.56554 -14.39506 -14.21525 -14.07215 -13.58266 -13.17528 -13.00548 -12.91717 -12.73757 -12.62310 -12.61552 -12.31882 -12.19686 -12.14963 -12.07880 -11.73715 -11.57422 -11.20797 -11.05607 -10.53632 -10.41780 -10.00386 -9.55988 -8.16348 -6.33221 0.44875 1.15218 1.27791 1.47078 1.47757 1.55668 2.17303 2.25745 2.41646 3.12242 3.16441 3.37542 3.83704 4.01913 4.07159 4.18019 4.37558 4.50892 4.58014 4.64050 4.74118 4.84857 4.90476 4.99144 5.02446 5.05096 5.16184 5.24024 5.38040 5.39151 5.41066 5.43515 5.48457 5.59557 5.66093 5.83320 6.08557 6.16362 6.72942 7.04922 7.31986 7.33914 7.55931 8.88813 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033481 B = 0.003532 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.090412 B = 7926.530157 C = 8175.206799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.297 3.703 4 H 0.006 0.994 5 C -0.551 4.551 6 H 0.072 0.928 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.969 3.031 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.707 5.707 14 C 0.703 3.297 15 O -0.597 6.597 16 N -0.639 5.639 17 C 0.260 3.740 18 C -0.247 4.247 19 C -0.001 4.001 20 C -0.013 4.013 21 C -0.146 4.146 22 C -0.146 4.146 23 O 0.094 5.906 24 N -0.413 5.413 25 H 0.043 0.957 26 H 0.030 0.970 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.266 0.734 31 H 0.403 0.597 32 H 0.424 0.576 33 H 0.176 0.824 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.708 7.661 -9.340 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.162 4.162 3 C 0.194 3.806 4 H 0.024 0.976 5 C -0.589 4.589 6 H 0.090 0.910 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.191 1.191 13 N -0.360 5.360 14 C 0.403 3.597 15 O -0.475 6.475 16 N -0.295 5.295 17 C 0.010 3.990 18 C -0.270 4.270 19 C -0.065 4.065 20 C -0.032 4.032 21 C -0.204 4.204 22 C -0.203 4.203 23 O 0.037 5.963 24 N -0.132 5.132 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.238 0.762 32 H 0.262 0.738 33 H 0.193 0.807 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.883 7.772 -9.473 18.517 hybrid contribution 1.781 -0.500 0.460 1.906 sum -12.101 7.273 -9.013 16.750 Atomic orbital electron populations 1.21653 0.96922 0.99059 1.00265 1.21821 0.93799 0.99094 1.01439 1.18358 0.93539 0.88903 0.79787 0.97589 1.21522 0.91278 1.39279 1.06843 0.91027 1.25704 1.03122 0.94332 0.94990 1.70021 1.37071 1.38061 1.09810 0.85447 0.79260 0.78372 0.77538 1.19798 1.21179 1.19063 1.45446 1.13407 1.58261 1.18904 1.15869 0.83439 0.78569 0.81845 1.90824 1.52366 1.65063 1.39241 1.41462 1.13556 1.57726 1.16708 1.20435 0.88865 0.97473 0.92240 1.22718 0.92566 1.08549 1.03192 1.24926 0.99191 0.97745 0.84593 1.20033 0.84796 0.98660 0.99732 1.21882 1.03437 0.92003 1.03030 1.21879 0.97828 1.00398 1.00224 1.84702 1.21682 1.59923 1.30019 1.73992 0.96573 1.20747 1.21845 0.93776 0.95048 0.94206 0.94129 0.90652 0.92497 0.76162 0.73839 0.80706 0.87076 0.88923 0.92997 0.91809 0.88938 0.91808 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.51 71.98 0.61 -4.73 16 2 C -0.12 -5.85 5.45 30.59 0.17 -5.69 16 3 C 0.30 14.71 2.24 44.24 0.10 14.81 16 4 H 0.01 0.36 7.58 -2.38 -0.02 0.35 16 5 C -0.55 -28.28 8.73 25.60 0.22 -28.05 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.00 5.29 84.66 0.45 1.45 16 8 N -0.91 -50.69 11.29 21.45 0.24 -50.45 16 9 Si 0.97 41.17 29.54 68.60 2.03 43.20 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 13 N -0.71 -28.35 5.03 -461.41 -2.32 -30.67 16 14 C 0.70 27.85 7.10 179.05 1.27 29.12 16 15 O -0.60 -27.20 10.75 -3.95 -0.04 -27.24 16 16 N -0.64 -20.85 5.43 -323.25 -1.75 -22.60 16 17 C 0.26 8.72 8.18 134.11 1.10 9.82 16 18 C -0.25 -7.97 9.78 22.52 0.22 -7.75 16 19 C 0.00 -0.01 5.98 24.99 0.15 0.14 16 20 C -0.01 -0.21 3.34 -11.54 -0.04 -0.25 16 21 C -0.15 -1.95 9.18 71.98 0.66 -1.29 16 22 C -0.15 -1.93 9.18 71.98 0.66 -1.26 16 23 O 0.09 2.62 11.19 71.18 0.80 3.42 16 24 N -0.41 -12.99 12.10 -56.30 -0.68 -13.67 16 25 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.03 1.47 7.84 -2.39 -0.02 1.45 16 27 H 0.04 1.71 5.64 -2.39 -0.01 1.69 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.08 4.03 5.95 -2.39 -0.01 4.02 16 30 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.40 13.57 8.55 -92.71 -0.79 12.77 16 32 H 0.42 11.07 8.84 -92.71 -0.82 10.25 16 33 H 0.18 6.29 6.22 -2.91 -0.02 6.27 16 34 H 0.11 1.71 8.12 -2.39 -0.02 1.69 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -63.69 329.51 3.30 -60.39 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: -0.54 Total: 31.30 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 5.57 Total: 6.31 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -4.51 Total: -117.39 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: 0.75 Total: -23.82 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -63.69 3.30 -60.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274592680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.292 kcal (2) G-P(sol) polarization free energy of solvation -63.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds