Wall clock time and date at job start Tue Mar 31 2020 06:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00013 * 2 1 4 4 H 1.08996 * 109.47487 * 29.99210 * 3 2 1 5 5 C 1.50707 * 109.47379 * 149.99639 * 3 2 1 6 6 O 1.21272 * 119.99566 * 4.99625 * 5 3 2 7 7 N 1.34776 * 120.00002 * 184.99438 * 5 3 2 8 8 C 1.46492 * 119.99739 * 179.97438 * 7 5 3 9 9 C 1.53001 * 109.46929 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47320 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47395 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99557 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99864 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99852 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00339 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.46790 * 89.99907 * 15 13 11 17 17 H 1.48501 * 109.47170 * 210.00060 * 15 13 11 18 18 H 1.48497 * 109.46714 * 329.99899 * 15 13 11 19 19 C 1.50703 * 109.46705 * 269.99418 * 3 2 1 20 20 C 1.39875 * 126.04085 * 325.02589 * 19 3 2 21 21 N 1.30829 * 108.20298 * 179.73658 * 20 19 3 22 22 N 1.40087 * 108.20855 * 359.97438 * 21 20 19 23 23 C 1.46500 * 126.04101 * 179.97438 * 22 21 20 24 24 C 1.34946 * 107.92254 * 0.02562 * 22 21 20 25 25 H 1.09000 * 109.47105 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47182 * 300.00613 * 1 2 3 27 27 H 1.08998 * 109.46711 * 60.00454 * 1 2 3 28 28 H 0.97001 * 119.99605 * 0.02562 * 7 5 3 29 29 H 1.09000 * 109.47345 * 300.00164 * 8 7 5 30 30 H 1.09004 * 109.47123 * 60.00743 * 8 7 5 31 31 H 1.09000 * 109.47233 * 300.00223 * 9 8 7 32 32 H 1.09001 * 109.47345 * 60.00344 * 9 8 7 33 33 H 1.09000 * 109.47157 * 300.00278 * 10 9 8 34 34 H 1.09005 * 109.47070 * 60.00088 * 10 9 8 35 35 H 0.96997 * 120.00321 * 180.02562 * 14 13 11 36 36 H 1.08004 * 125.89555 * 359.71602 * 20 19 3 37 37 H 1.08995 * 109.47195 * 89.97299 * 23 22 21 38 38 H 1.08996 * 109.47070 * 209.97608 * 23 22 21 39 39 H 1.09003 * 109.47068 * 329.97665 * 23 22 21 40 40 H 1.07999 * 126.12479 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 3.3387 1.2639 0.7105 6 8 3.7896 0.2046 1.0915 7 7 4.0255 2.4041 0.9224 8 6 5.3165 2.3637 1.6135 9 6 5.8805 3.7817 1.7236 10 6 7.2285 3.7398 2.4460 11 6 7.7844 5.1364 2.5539 12 1 7.2312 5.9705 2.1482 13 6 8.9985 5.3493 3.1715 14 7 9.4834 6.5682 3.2661 15 14 9.9550 3.9066 3.8738 16 1 10.8616 3.3598 2.8325 17 1 10.7564 4.3635 5.0376 18 1 9.0072 2.8497 4.3097 19 6 2.2146 1.7642 -1.4209 20 6 2.5632 0.9528 -2.5056 21 7 2.6426 1.7072 -3.5715 22 7 2.3462 3.0246 -3.1984 23 6 2.3225 4.1879 -4.0885 24 6 2.0874 3.0329 -1.8740 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.6645 3.2514 0.6178 29 1 5.1812 1.9484 2.6121 30 1 6.0104 1.7391 1.0510 31 1 6.0157 4.1975 0.7251 32 1 5.1865 4.4061 2.2863 33 1 7.0929 3.3241 3.4445 34 1 7.9228 3.1153 1.8837 35 1 10.3378 6.7180 3.7002 36 1 2.7370 -0.1126 -2.4694 37 1 1.3219 4.3073 -4.5038 38 1 2.5912 5.0817 -3.5255 39 1 3.0368 4.0403 -4.8985 40 1 1.8250 3.8971 -1.2819 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282003144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:15 Heat of formation + Delta-G solvation = -7.453403 kcal Electronic energy + Delta-G solvation = -21632.508768 eV Core-core repulsion = 18256.403922 eV Total energy + Delta-G solvation = -3376.104846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.57750 -39.58833 -37.61052 -35.43232 -33.67029 -33.27854 -31.86964 -31.01680 -28.68643 -27.18598 -26.74979 -25.27739 -22.81022 -21.38126 -21.10438 -20.62790 -19.82714 -17.62607 -17.28441 -16.75175 -16.49470 -15.77600 -15.61173 -15.21798 -15.04387 -14.63369 -14.43047 -14.01553 -13.92132 -13.36786 -13.19215 -12.98149 -12.74763 -12.70874 -12.54206 -11.97328 -11.87282 -11.58946 -11.08503 -10.94407 -10.88964 -10.27976 -10.09885 -9.94186 -9.77394 -9.68572 -9.55237 -9.24039 -8.83973 -8.63658 -8.56406 -6.07572 -4.06296 1.56747 2.22773 2.44290 2.82201 2.94511 3.31394 3.38917 3.43535 3.99165 4.25496 4.43953 4.50528 4.69305 4.81484 4.84798 4.86176 5.03599 5.10190 5.19660 5.20621 5.26853 5.47047 5.51155 5.57084 5.61678 5.66759 6.01958 6.35292 6.37491 6.44535 6.64963 6.68640 6.78597 6.88156 7.22189 7.35723 7.43654 7.65272 7.75910 8.37122 8.48971 8.95813 9.54937 11.05640 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018783 B = 0.003588 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.378990 B = 7802.026501 C = 8817.265721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.156 3.844 4 H 0.089 0.911 5 C 0.516 3.484 6 O -0.523 6.523 7 N -0.721 5.721 8 C 0.116 3.884 9 C -0.112 4.112 10 C -0.012 4.012 11 C -0.522 4.522 12 H 0.071 0.929 13 C 0.067 3.933 14 N -0.904 5.904 15 Si 0.879 3.121 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.264 1.264 19 C -0.268 4.268 20 C 0.081 3.919 21 N -0.297 5.297 22 N -0.372 5.372 23 C 0.100 3.900 24 C 0.070 3.930 25 H 0.089 0.911 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.396 0.604 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.014 0.986 35 H 0.263 0.737 36 H 0.186 0.814 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.003 -6.375 -11.685 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.093 3.907 4 H 0.106 0.894 5 C 0.300 3.700 6 O -0.398 6.398 7 N -0.373 5.373 8 C -0.006 4.006 9 C -0.150 4.150 10 C -0.050 4.050 11 C -0.560 4.560 12 H 0.089 0.911 13 C -0.135 4.135 14 N -0.543 5.543 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.188 1.188 19 C -0.281 4.281 20 C -0.105 4.105 21 N -0.118 5.118 22 N -0.153 5.153 23 C -0.041 4.041 24 C -0.077 4.077 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.230 0.770 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.203 0.797 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -20.164 -7.057 -12.706 24.857 hybrid contribution 0.090 0.150 1.060 1.074 sum -20.075 -6.906 -11.647 24.214 Atomic orbital electron populations 1.22853 0.80754 1.03053 0.99954 1.88036 1.19529 1.24659 1.94624 1.19914 0.93559 0.86553 0.90656 0.89354 1.20193 0.86021 0.84373 0.79387 1.90712 1.69137 1.29716 1.50245 1.45974 1.22447 1.08926 1.59983 1.21651 0.82683 0.99682 0.96629 1.21695 0.99185 0.92800 1.01321 1.19509 0.91850 0.98132 0.95463 1.21087 1.04875 0.92196 1.37823 0.91063 1.25024 0.97345 0.95600 0.95486 1.69909 1.19762 1.20294 1.44286 0.86779 0.80289 0.83267 0.79008 1.20229 1.21356 1.18838 1.20208 1.17787 0.93340 0.96726 1.23739 0.97228 1.00399 0.89183 1.77440 1.23459 0.87367 1.23547 1.48519 1.52935 1.07380 1.06512 1.21912 1.03677 0.84145 0.94387 1.22296 1.00810 0.98916 0.85694 0.89251 0.93896 0.93921 0.77014 0.91655 0.91782 0.92256 0.92106 0.96239 0.96732 0.92693 0.79705 0.90674 0.89101 0.89101 0.80544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.81 101.05 1.09 1.34 16 2 O -0.35 -4.35 9.60 -55.09 -0.53 -4.88 16 3 C 0.16 1.76 2.96 -29.03 -0.09 1.67 16 4 H 0.09 0.72 7.79 -51.93 -0.40 0.32 16 5 C 0.52 7.71 7.17 -10.98 -0.08 7.64 16 6 O -0.52 -10.17 16.51 -14.30 -0.24 -10.40 16 7 N -0.72 -9.90 5.51 -60.30 -0.33 -10.23 16 8 C 0.12 1.94 5.67 -4.05 -0.02 1.91 16 9 C -0.11 -2.06 5.27 -26.73 -0.14 -2.20 16 10 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 11 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 12 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 13 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 14 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 15 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 19 C -0.27 -2.88 5.06 -105.05 -0.53 -3.41 16 20 C 0.08 0.99 11.63 -17.37 -0.20 0.79 16 21 N -0.30 -3.73 12.58 30.63 0.39 -3.35 16 22 N -0.37 -3.60 4.01 -68.17 -0.27 -3.88 16 23 C 0.10 0.56 11.47 59.85 0.69 1.25 16 24 C 0.07 0.61 11.40 -17.22 -0.20 0.41 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.40 4.25 8.47 -40.82 -0.35 3.90 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 34 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.19 2.13 8.06 -52.48 -0.42 1.71 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.18 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -36.62 345.80 -5.87 -42.49 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.17 Total: -1.07 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.02 Total: -4.10 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.55 Total: -44.33 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.76 Total: -15.28 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.62 -5.87 -42.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282003144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.037 kcal (2) G-P(sol) polarization free energy of solvation -36.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds