Wall clock time and date at job start Tue Mar 31 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.47444 * 29.99805 * 3 2 1 5 5 C 1.50700 * 109.47377 * 270.00006 * 3 2 1 6 6 O 1.21287 * 119.99933 * 354.99978 * 5 3 2 7 7 N 1.34776 * 120.00542 * 175.00114 * 5 3 2 8 8 C 1.46493 * 120.00207 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.47145 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.47261 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47051 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00237 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99860 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99856 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99820 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46655 * 90.00841 * 15 13 11 17 17 H 1.48501 * 109.46871 * 210.00149 * 15 13 11 18 18 H 1.48496 * 109.47282 * 330.00655 * 15 13 11 19 19 C 1.50704 * 109.47338 * 150.00083 * 3 2 1 20 20 C 1.39869 * 126.03359 * 39.68990 * 19 3 2 21 21 N 1.30843 * 108.20115 * 179.82193 * 20 19 3 22 22 N 1.40090 * 108.20108 * 0.43613 * 21 20 19 23 23 C 1.46501 * 126.03530 * 179.74113 * 22 21 20 24 24 C 1.34949 * 107.92676 * 359.72096 * 22 21 20 25 25 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 26 26 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 0.97007 * 119.99870 * 0.02562 * 7 5 3 29 29 H 1.09006 * 109.47562 * 299.99903 * 8 7 5 30 30 H 1.09000 * 109.47280 * 59.99894 * 8 7 5 31 31 H 1.09007 * 109.46732 * 299.99689 * 9 8 7 32 32 H 1.09000 * 109.47361 * 59.99647 * 9 8 7 33 33 H 1.08995 * 109.46744 * 299.99867 * 10 9 8 34 34 H 1.09000 * 109.47314 * 59.99505 * 10 9 8 35 35 H 0.97001 * 119.99448 * 179.97438 * 14 13 11 36 36 H 1.08002 * 125.90234 * 359.97438 * 20 19 3 37 37 H 1.09002 * 109.46889 * 269.97953 * 23 22 21 38 38 H 1.08996 * 109.47065 * 29.97763 * 23 22 21 39 39 H 1.09000 * 109.47105 * 149.97698 * 23 22 21 40 40 H 1.07999 * 126.12735 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7645 -1.4208 6 8 1.9791 1.0107 -2.3414 7 7 2.6587 3.0125 -1.6686 8 6 2.8568 3.4588 -3.0498 9 6 3.3628 4.9027 -3.0516 10 6 3.5691 5.3691 -4.4942 11 6 4.0669 6.7915 -4.4960 12 1 4.2211 7.3108 -3.5617 13 6 4.3264 7.4295 -5.6904 14 7 4.1390 6.7970 -6.8281 15 14 4.9427 9.1929 -5.6926 16 1 6.4272 9.1983 -5.6530 17 1 4.4780 9.8781 -6.9254 18 1 4.4131 9.9039 -4.5013 19 6 3.3386 1.2640 0.7104 20 6 4.2897 0.2427 0.6178 21 7 5.3093 0.5641 1.3721 22 7 5.0344 1.7972 1.9773 23 6 5.9113 2.5167 2.9045 24 6 3.8195 2.2055 1.5551 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.8474 3.6153 -0.9324 29 1 3.5902 2.8166 -3.5376 30 1 1.9108 3.4043 -3.5885 31 1 2.6297 5.5452 -2.5638 32 1 4.3089 4.9569 -2.5131 33 1 4.3019 4.7267 -4.9824 34 1 2.6227 5.3150 -5.0324 35 1 4.3212 7.2460 -7.6683 36 1 4.1993 -0.6549 0.0240 37 1 5.6901 2.2090 3.9265 38 1 6.9514 2.2873 2.6730 39 1 5.7447 3.5892 2.8038 40 1 3.3202 3.1196 1.8405 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282003148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:18 Heat of formation + Delta-G solvation = -11.763325 kcal Electronic energy + Delta-G solvation = -21586.759512 eV Core-core repulsion = 18210.467773 eV Total energy + Delta-G solvation = -3376.291738 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52174 -39.61803 -37.41976 -35.28924 -33.69928 -33.27085 -31.80848 -30.84123 -28.54105 -26.91556 -26.47897 -25.30105 -22.96907 -21.35714 -21.04899 -20.64949 -19.83970 -17.57873 -17.20074 -16.61410 -16.27267 -15.73553 -15.53902 -15.08561 -14.84893 -14.55068 -14.47173 -14.27811 -13.72852 -13.31434 -13.22805 -12.94572 -12.70330 -12.33483 -12.29048 -11.85527 -11.67945 -11.55050 -10.91812 -10.76758 -10.72444 -10.62942 -10.57928 -9.87416 -9.68908 -9.62304 -9.32428 -9.12884 -8.74505 -8.56059 -8.38348 -6.02844 -4.06097 1.60256 2.24992 2.49423 2.83590 3.22321 3.29375 3.35849 3.38284 3.85441 4.33134 4.42921 4.52851 4.74707 4.83993 4.88010 4.91472 5.05927 5.12138 5.22970 5.32895 5.34567 5.53780 5.59195 5.69889 5.75104 5.78614 6.16608 6.40710 6.50860 6.59851 6.69005 6.80795 6.92146 7.00347 7.47857 7.62556 7.74271 7.75538 7.95915 8.36297 8.43847 9.00545 9.58046 11.08469 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.003532 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.122874 B = 7926.497302 C = 9137.159155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.158 3.842 4 H 0.088 0.912 5 C 0.491 3.509 6 O -0.529 6.529 7 N -0.721 5.721 8 C 0.117 3.883 9 C -0.119 4.119 10 C 0.023 3.977 11 C -0.523 4.523 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.240 4.240 20 C 0.083 3.917 21 N -0.297 5.297 22 N -0.373 5.373 23 C 0.101 3.899 24 C 0.072 3.928 25 H 0.047 0.953 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.395 0.605 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.187 0.813 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.427 -9.186 21.659 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C 0.095 3.905 4 H 0.106 0.894 5 C 0.275 3.725 6 O -0.405 6.405 7 N -0.373 5.373 8 C -0.006 4.006 9 C -0.157 4.157 10 C -0.014 4.014 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.253 4.253 20 C -0.103 4.103 21 N -0.118 5.118 22 N -0.154 5.154 23 C -0.040 4.040 24 C -0.076 4.076 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.108 0.892 28 H 0.228 0.772 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.204 0.796 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.211 -10.164 21.320 23.722 hybrid contribution -0.538 1.847 -0.087 1.926 sum -2.749 -8.317 21.233 22.969 Atomic orbital electron populations 1.22861 0.80555 1.03211 1.00022 1.87976 1.19938 1.24694 1.94427 1.19896 0.92109 0.86894 0.91631 0.89449 1.21169 0.77619 0.82118 0.91610 1.90708 1.50229 1.53649 1.45880 1.46140 1.67205 1.13991 1.09971 1.21635 1.01155 0.96921 0.80855 1.21877 0.99645 0.91901 1.02323 1.19031 0.97403 0.96023 0.88961 1.21194 1.44460 0.98122 0.92326 0.92698 1.25031 0.95648 0.98093 0.95669 1.69966 1.48784 1.37122 0.97341 0.86587 0.79046 0.84824 0.77485 1.20670 1.21180 1.19908 1.19454 0.98670 0.99026 1.08127 1.23763 0.90083 0.99472 0.96994 1.77454 1.23369 0.97047 1.13944 1.48481 1.14174 1.16586 1.36184 1.21899 0.94838 0.95928 0.91353 1.22207 0.87959 1.00183 0.97240 0.93475 0.94071 0.89227 0.77168 0.91832 0.91772 0.92787 0.92867 0.96282 0.96249 0.92907 0.79650 0.90660 0.89104 0.89191 0.80482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.81 101.05 1.09 1.38 16 2 O -0.35 -4.54 9.66 -55.09 -0.53 -5.07 16 3 C 0.16 1.84 2.95 -29.03 -0.09 1.76 16 4 H 0.09 0.75 7.78 -51.93 -0.40 0.34 16 5 C 0.49 7.51 7.12 -10.99 -0.08 7.43 16 6 O -0.53 -10.36 16.51 -14.31 -0.24 -10.60 16 7 N -0.72 -10.42 5.51 -60.29 -0.33 -10.75 16 8 C 0.12 2.09 5.67 -4.04 -0.02 2.07 16 9 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 15 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.24 -2.74 5.06 -105.05 -0.53 -3.28 16 20 C 0.08 1.08 11.70 -17.36 -0.20 0.87 16 21 N -0.30 -3.88 12.58 30.63 0.39 -3.49 16 22 N -0.37 -3.72 4.01 -68.16 -0.27 -4.00 16 23 C 0.10 0.57 11.47 59.85 0.69 1.26 16 24 C 0.07 0.64 11.40 -17.22 -0.20 0.45 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.40 4.51 8.47 -40.82 -0.35 4.17 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.19 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -36.14 349.49 -6.24 -42.39 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.21 Total: -0.60 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.03 Total: -3.40 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.52 Total: -44.32 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.77 Total: -15.67 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.14 -6.24 -42.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282003148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.622 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds