Wall clock time and date at job start Tue Mar 31 2020 06:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00587 * 2 1 4 4 C 1.52996 * 109.47562 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47318 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47220 * 179.97438 * 5 4 3 7 7 C 1.34965 * 125.97705 * 124.98369 * 6 5 4 8 8 C 1.35238 * 107.86346 * 180.02562 * 7 6 5 9 9 C 1.40410 * 107.86643 * 359.97438 * 8 7 6 10 10 N 1.40158 * 125.97643 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99807 * 0.02562 * 10 9 8 12 12 O 1.21294 * 119.99808 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.52999 * 109.47203 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47508 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99404 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00110 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99895 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99672 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46832 * 90.00458 * 19 17 15 21 21 H 1.48493 * 109.47206 * 210.00213 * 19 17 15 22 22 H 1.48497 * 109.47209 * 330.00511 * 19 17 15 23 23 N 1.31224 * 108.05286 * 359.97438 * 9 8 7 24 24 H 1.08994 * 109.46686 * 59.99290 * 1 2 3 25 25 H 1.08999 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46458 * 299.99851 * 1 2 3 27 27 H 1.09001 * 109.47126 * 59.99995 * 3 2 1 28 28 H 1.09005 * 109.47119 * 300.00579 * 3 2 1 29 29 H 1.09001 * 109.47221 * 59.99665 * 4 3 2 30 30 H 1.09005 * 109.47060 * 300.00227 * 4 3 2 31 31 H 1.09004 * 109.47173 * 59.99990 * 5 4 3 32 32 H 1.08995 * 109.46974 * 299.99979 * 5 4 3 33 33 H 1.07999 * 126.06888 * 0.05322 * 7 6 5 34 34 H 1.07998 * 126.07029 * 179.97438 * 8 7 6 35 35 H 0.96999 * 120.00507 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.46828 * 299.99542 * 13 11 10 37 37 H 1.09000 * 109.47349 * 60.00108 * 13 11 10 38 38 H 1.09005 * 109.47003 * 300.00041 * 14 13 11 39 39 H 1.08999 * 109.47512 * 59.99276 * 14 13 11 40 40 H 0.97005 * 119.99628 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 4.1579 2.5822 0.0000 6 7 5.6184 2.4664 0.0000 7 6 6.4583 3.0285 -0.8946 8 6 7.7205 2.6860 -0.5505 9 6 7.6508 1.8836 0.5996 10 7 8.7404 1.3198 1.2775 11 6 9.9945 1.5326 0.8320 12 8 10.1801 2.2116 -0.1558 13 6 11.1659 0.9260 1.5604 14 6 12.4648 1.3183 0.8534 15 6 13.6364 0.7122 1.5822 16 1 13.4711 0.1080 2.4619 17 6 14.9193 0.9291 1.1258 18 7 15.1205 1.6654 0.0548 19 14 16.3715 0.1784 2.0297 20 1 16.6643 -1.1643 1.4668 21 1 17.5607 1.0528 1.8683 22 1 16.0438 0.0497 3.4723 23 7 6.3873 1.7539 0.9290 24 1 -0.3632 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 1.6888 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8568 0.6437 -0.8908 30 1 3.8575 0.6434 0.8891 31 1 3.8367 3.1226 0.8905 32 1 3.8360 3.1236 -0.8895 33 1 6.1730 3.6430 -1.7356 34 1 8.6221 2.9778 -1.0685 35 1 8.5920 0.7772 2.0676 36 1 11.1852 1.2930 2.5865 37 1 11.0686 -0.1597 1.5645 38 1 12.4452 0.9510 -0.1727 39 1 12.5624 2.4039 0.8487 40 1 16.0231 1.8182 -0.2660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291744225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:56 Heat of formation + Delta-G solvation = -10.416008 kcal Electronic energy + Delta-G solvation = -20688.160351 eV Core-core repulsion = 17311.927037 eV Total energy + Delta-G solvation = -3376.233314 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.22978 -39.16130 -38.41321 -35.33265 -33.91614 -33.49447 -31.21527 -30.33326 -29.84332 -27.28673 -26.03006 -24.96796 -22.73586 -22.00470 -21.28470 -20.17453 -19.45906 -17.47583 -16.91807 -16.78325 -16.63194 -15.93932 -15.65705 -15.37944 -15.21133 -14.86345 -14.42296 -14.25616 -13.51782 -13.31484 -12.91980 -12.86519 -12.59896 -12.31850 -12.19924 -12.12310 -11.56741 -11.44753 -11.18666 -10.93639 -10.60487 -10.58036 -10.55624 -10.14703 -9.98425 -9.66481 -9.21069 -9.07405 -8.72551 -8.32756 -8.05216 -5.96447 -4.00814 1.86769 2.22420 2.72665 3.20649 3.34323 3.40435 3.42925 3.51111 3.53848 4.30726 4.47733 4.55998 4.63162 4.72772 4.80379 4.86159 4.90478 4.95025 5.01555 5.22288 5.29089 5.38854 5.46926 5.66967 5.80093 5.86841 5.95101 6.16745 6.17024 6.44941 6.67512 6.82061 7.00989 7.13502 7.38925 7.73652 7.83466 8.04710 8.06497 8.36321 8.61471 9.07043 9.62833 11.14452 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.045732 B = 0.002294 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.111652 B =12201.702573 C =12616.621610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.133 4.133 5 C 0.147 3.853 6 N -0.376 5.376 7 C 0.057 3.943 8 C -0.263 4.263 9 C 0.308 3.692 10 N -0.647 5.647 11 C 0.518 3.482 12 O -0.507 6.507 13 C -0.125 4.125 14 C 0.036 3.964 15 C -0.528 4.528 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.894 3.106 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 N -0.331 5.331 24 H 0.041 0.959 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.174 0.826 34 H 0.174 0.826 35 H 0.412 0.588 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.527 1.304 -0.171 28.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.172 4.172 5 C 0.025 3.975 6 N -0.161 5.161 7 C -0.088 4.088 8 C -0.294 4.294 9 C 0.051 3.949 10 N -0.297 5.297 11 C 0.306 3.694 12 O -0.379 6.379 13 C -0.165 4.165 14 C -0.001 4.001 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.161 5.161 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.192 0.808 34 H 0.191 0.809 35 H 0.248 0.752 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -28.993 1.223 -0.208 29.020 hybrid contribution 0.956 -0.062 0.268 0.995 sum -28.037 1.161 0.060 28.061 Atomic orbital electron populations 1.22762 0.80757 1.02977 1.00008 1.87901 1.19892 1.27709 1.95421 1.22406 0.93396 0.85055 1.00393 1.21776 0.93048 0.97006 1.05329 1.21411 0.74795 0.97550 1.03706 1.48002 1.05503 1.40853 1.21718 1.22577 0.90068 1.00006 0.96162 1.21989 0.98542 1.07888 1.00941 1.19380 0.87244 0.95082 0.93147 1.43253 1.03607 1.52070 1.30797 1.21860 0.82687 0.79927 0.84877 1.90596 1.84439 1.37272 1.25584 1.21914 0.93312 1.00922 1.00390 1.18938 0.87641 0.97765 0.95802 1.21199 0.91202 1.31985 1.12226 0.92492 1.25020 0.99025 0.95250 0.95076 1.69995 1.21401 1.38310 1.23048 0.86576 0.82172 0.79039 0.80067 1.20677 1.21240 1.19880 1.77283 1.00979 1.22332 1.15528 0.93997 0.89475 0.93965 0.92913 0.93070 0.90410 0.89393 0.89900 0.88551 0.80846 0.80886 0.75203 0.89613 0.89603 0.95594 0.95594 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.49 10.70 -35.23 -0.38 -3.87 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 C -0.13 -1.10 5.77 -26.73 -0.15 -1.26 16 5 C 0.15 1.11 6.51 -4.04 -0.03 1.08 16 6 N -0.38 -4.56 3.68 -61.38 -0.23 -4.79 16 7 C 0.06 0.69 11.44 -17.24 -0.20 0.49 16 8 C -0.26 -4.27 9.61 -39.83 -0.38 -4.65 16 9 C 0.31 5.13 8.11 -154.38 -1.25 3.87 16 10 N -0.65 -10.39 5.45 -11.13 -0.06 -10.46 16 11 C 0.52 9.99 7.80 -10.99 -0.09 9.91 16 12 O -0.51 -11.51 13.11 5.55 0.07 -11.44 16 13 C -0.13 -2.48 5.64 -27.89 -0.16 -2.64 16 14 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 15 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 23 N -0.33 -5.04 12.43 31.44 0.39 -4.65 16 24 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.19 8.14 -51.92 -0.42 -0.23 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.43 8.07 -51.93 -0.42 0.01 16 33 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.17 3.15 5.92 -52.49 -0.31 2.84 16 35 H 0.41 5.33 8.82 -40.82 -0.36 4.97 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 344.69 15.07 5.19 5.19 Total: -1.00 -35.70 344.69 -6.86 -42.57 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.12 Total: 1.23 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.45 Total: -3.93 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.84 Total: -46.30 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.30 Total: -15.31 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.70 -6.86 -42.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291744225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.153 kcal (2) G-P(sol) polarization free energy of solvation -35.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds