Wall clock time and date at job start Tue Mar 31 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00587 * 2 1 4 4 C 1.52996 * 109.47562 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47318 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47220 * 179.97438 * 5 4 3 7 7 C 1.34965 * 125.97705 * 124.98369 * 6 5 4 8 8 C 1.35238 * 107.86346 * 180.02562 * 7 6 5 9 9 C 1.40410 * 107.86643 * 359.97438 * 8 7 6 10 10 N 1.40158 * 125.97643 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99807 * 0.02562 * 10 9 8 12 12 O 1.21294 * 119.99808 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.52999 * 109.47203 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47508 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99404 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00110 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99895 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99672 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46832 * 90.00458 * 19 17 15 21 21 H 1.48493 * 109.47206 * 210.00213 * 19 17 15 22 22 H 1.48497 * 109.47209 * 330.00511 * 19 17 15 23 23 N 1.31224 * 108.05286 * 359.97438 * 9 8 7 24 24 H 1.08994 * 109.46686 * 59.99290 * 1 2 3 25 25 H 1.08999 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46458 * 299.99851 * 1 2 3 27 27 H 1.09001 * 109.47126 * 59.99995 * 3 2 1 28 28 H 1.09005 * 109.47119 * 300.00579 * 3 2 1 29 29 H 1.09001 * 109.47221 * 59.99665 * 4 3 2 30 30 H 1.09005 * 109.47060 * 300.00227 * 4 3 2 31 31 H 1.09004 * 109.47173 * 59.99990 * 5 4 3 32 32 H 1.08995 * 109.46974 * 299.99979 * 5 4 3 33 33 H 1.07999 * 126.06888 * 0.05322 * 7 6 5 34 34 H 1.07998 * 126.07029 * 179.97438 * 8 7 6 35 35 H 0.96999 * 120.00507 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.46828 * 299.99542 * 13 11 10 37 37 H 1.09000 * 109.47349 * 60.00108 * 13 11 10 38 38 H 1.09005 * 109.47003 * 300.00041 * 14 13 11 39 39 H 1.08999 * 109.47512 * 59.99276 * 14 13 11 40 40 H 0.97005 * 119.99628 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 4.1579 2.5822 0.0000 6 7 5.6184 2.4664 0.0000 7 6 6.4583 3.0285 -0.8946 8 6 7.7205 2.6860 -0.5505 9 6 7.6508 1.8836 0.5996 10 7 8.7404 1.3198 1.2775 11 6 9.9945 1.5326 0.8320 12 8 10.1801 2.2116 -0.1558 13 6 11.1659 0.9260 1.5604 14 6 12.4648 1.3183 0.8534 15 6 13.6364 0.7122 1.5822 16 1 13.4711 0.1080 2.4619 17 6 14.9193 0.9291 1.1258 18 7 15.1205 1.6654 0.0548 19 14 16.3715 0.1784 2.0297 20 1 16.6643 -1.1643 1.4668 21 1 17.5607 1.0528 1.8683 22 1 16.0438 0.0497 3.4723 23 7 6.3873 1.7539 0.9290 24 1 -0.3632 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 1.6888 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8568 0.6437 -0.8908 30 1 3.8575 0.6434 0.8891 31 1 3.8367 3.1226 0.8905 32 1 3.8360 3.1236 -0.8895 33 1 6.1730 3.6430 -1.7356 34 1 8.6221 2.9778 -1.0685 35 1 8.5920 0.7772 2.0676 36 1 11.1852 1.2930 2.5865 37 1 11.0686 -0.1597 1.5645 38 1 12.4452 0.9510 -0.1727 39 1 12.5624 2.4039 0.8487 40 1 16.0231 1.8182 -0.2660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291744225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:55 Heat of formation + Delta-G solvation = -35.681287 kcal Electronic energy + Delta-G solvation = -20689.255936 eV Core-core repulsion = 17311.927037 eV Total energy + Delta-G solvation = -3377.328899 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.35640 -40.62306 -38.96649 -36.41628 -35.55170 -34.97968 -33.04527 -31.46133 -30.87372 -28.16607 -27.53490 -25.83073 -24.27666 -22.88282 -22.56247 -21.41312 -20.89429 -18.76487 -18.44646 -17.59012 -17.43324 -17.21355 -16.83783 -16.64841 -16.41175 -16.03532 -15.72591 -15.17218 -15.02326 -14.43744 -14.29494 -14.15852 -13.91968 -13.38212 -13.25592 -13.13895 -12.80885 -12.71034 -12.46778 -12.16261 -12.08790 -11.91136 -11.76876 -11.64447 -11.60494 -11.27555 -10.76681 -10.63075 -10.54002 -9.86372 -9.21953 -8.15934 -6.29239 0.75448 1.22738 1.40601 1.44603 1.46783 1.57691 2.15676 2.20184 2.45766 2.83428 3.17514 3.66083 3.79053 3.97181 4.01667 4.15548 4.20939 4.38647 4.45095 4.45551 4.50467 4.54870 4.56345 4.57692 4.70247 4.85337 4.86543 5.00619 5.06855 5.13311 5.18410 5.52810 5.65080 5.77119 5.87666 6.12388 6.18497 6.19394 6.25238 6.84344 6.88438 7.16894 7.40588 8.96594 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.045732 B = 0.002294 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.111652 B =12201.702573 C =12616.621610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.066 3.934 4 C -0.126 4.126 5 C 0.139 3.861 6 N -0.366 5.366 7 C 0.087 3.913 8 C -0.310 4.310 9 C 0.281 3.719 10 N -0.631 5.631 11 C 0.522 3.478 12 O -0.550 6.550 13 C -0.112 4.112 14 C 0.041 3.959 15 C -0.543 4.543 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.936 5.936 19 Si 0.973 3.027 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.256 1.256 23 N -0.343 5.343 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.140 0.860 33 H 0.223 0.777 34 H 0.146 0.854 35 H 0.427 0.573 36 H 0.112 0.888 37 H 0.111 0.889 38 H -0.013 1.013 39 H -0.012 1.012 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.731 1.133 0.896 30.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.011 4.011 4 C -0.165 4.165 5 C 0.019 3.981 6 N -0.150 5.150 7 C -0.060 4.060 8 C -0.341 4.341 9 C 0.026 3.974 10 N -0.282 5.282 11 C 0.310 3.690 12 O -0.425 6.425 13 C -0.152 4.152 14 C 0.003 3.997 15 C -0.580 4.580 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.797 3.203 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.180 1.180 23 N -0.174 5.174 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.158 0.842 33 H 0.239 0.761 34 H 0.163 0.837 35 H 0.266 0.734 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.005 0.995 39 H 0.006 0.994 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -31.268 1.019 0.916 31.298 hybrid contribution 1.441 0.027 -0.119 1.446 sum -29.827 1.046 0.798 29.856 Atomic orbital electron populations 1.22922 0.79187 1.03700 1.01162 1.87850 1.21758 1.29220 1.95703 1.22465 0.91794 0.84613 1.02224 1.21664 0.94686 0.96987 1.03155 1.21899 0.71806 0.97632 1.06712 1.48452 1.07092 1.39052 1.20411 1.23116 0.88507 0.98238 0.96146 1.21918 0.99562 1.10465 1.02112 1.19542 0.87651 0.96264 0.93931 1.42833 1.02758 1.51627 1.30944 1.21636 0.83636 0.79436 0.84247 1.90602 1.85209 1.39272 1.27434 1.21667 0.90382 1.02502 1.00666 1.18721 0.91241 0.95135 0.94559 1.21702 0.91800 1.31825 1.12715 0.90510 1.26105 1.02713 0.95670 0.95901 1.70171 1.22196 1.40116 1.25103 0.85333 0.77633 0.77990 0.79351 1.19832 1.21250 1.17995 1.77216 1.00430 1.23039 1.16760 0.92650 0.89149 0.92930 0.91483 0.90686 0.91963 0.92224 0.88211 0.84216 0.76070 0.83689 0.73449 0.86999 0.87061 0.99468 0.99400 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.43 -6.98 10.70 -148.98 -1.59 -8.57 16 3 C 0.07 0.70 5.94 71.98 0.43 1.12 16 4 C -0.13 -1.86 5.77 30.59 0.18 -1.68 16 5 C 0.14 1.61 6.51 86.38 0.56 2.17 16 6 N -0.37 -8.05 3.68 -348.11 -1.28 -9.33 16 7 C 0.09 1.93 11.44 83.52 0.96 2.89 16 8 C -0.31 -10.22 9.61 22.11 0.21 -10.01 16 9 C 0.28 9.44 8.11 133.32 1.08 10.52 16 10 N -0.63 -20.48 5.45 -307.51 -1.68 -22.16 16 11 C 0.52 20.79 7.80 87.66 0.68 21.47 16 12 O -0.55 -26.60 13.11 -3.07 -0.04 -26.64 16 13 C -0.11 -4.47 5.64 29.85 0.17 -4.30 16 14 C 0.04 2.26 4.26 29.85 0.13 2.39 16 15 C -0.54 -30.63 9.11 25.60 0.23 -30.39 16 16 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 17 C -0.01 -0.37 5.46 84.66 0.46 0.10 16 18 N -0.94 -59.06 13.29 21.45 0.28 -58.78 16 19 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 N -0.34 -10.19 12.43 -54.45 -0.68 -10.87 16 24 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 27 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.14 0.49 8.07 -2.39 -0.02 0.47 16 33 H 0.22 2.59 8.06 -2.91 -0.02 2.56 16 34 H 0.15 5.64 5.92 -2.91 -0.02 5.63 16 35 H 0.43 10.79 8.82 -92.71 -0.82 9.97 16 36 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 37 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 38 H -0.01 -0.81 8.10 -2.38 -0.02 -0.83 16 39 H -0.01 -0.77 8.10 -2.39 -0.02 -0.79 16 40 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -82.72 344.69 3.60 -79.12 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.22 Total: 15.12 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 6.34 Total: -4.23 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -3.35 Total: -101.13 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.63 Total: -35.21 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -82.72 3.60 -79.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291744225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.440 kcal (2) G-P(sol) polarization free energy of solvation -82.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds