Wall clock time and date at job start Tue Mar 31 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00393 * 2 1 4 4 N 1.46902 * 109.47106 * 124.14396 * 3 2 1 5 5 C 1.46901 * 110.99935 * 300.27208 * 4 3 2 6 6 C 1.50700 * 109.47185 * 288.16383 * 5 4 3 7 7 H 1.08006 * 119.99908 * 354.73719 * 6 5 4 8 8 C 1.37872 * 120.00106 * 174.74581 * 6 5 4 9 9 N 1.31514 * 120.00155 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00044 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47356 * 89.99768 * 10 8 6 12 12 H 1.48501 * 109.46942 * 209.99726 * 10 8 6 13 13 H 1.48501 * 109.47026 * 329.99084 * 10 8 6 14 14 C 1.46899 * 111.00204 * 64.22844 * 4 3 2 15 15 C 1.50702 * 109.47134 * 66.04471 * 14 4 3 16 16 N 1.31127 * 126.54899 * 90.00152 * 15 14 4 17 17 C 1.34500 * 105.61208 * 180.02562 * 16 15 14 18 18 C 1.50697 * 126.28295 * 179.97438 * 17 16 15 19 19 H 1.09004 * 109.47943 * 14.99648 * 18 17 16 20 20 C 1.53000 * 109.47037 * 254.99333 * 18 17 16 21 21 O 1.42905 * 109.47144 * 134.99906 * 18 17 16 22 22 C 1.42897 * 113.99929 * 209.99402 * 21 18 17 23 23 N 1.29940 * 107.42138 * 0.23886 * 17 16 15 24 24 O 1.21291 * 110.25741 * 359.58348 * 23 17 16 25 25 H 1.08000 * 119.99618 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00609 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99618 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47302 * 4.14268 * 3 2 1 29 29 H 1.08999 * 109.47322 * 244.14471 * 3 2 1 30 30 H 1.08996 * 109.47188 * 48.15793 * 5 4 3 31 31 H 1.08998 * 109.47139 * 168.16155 * 5 4 3 32 32 H 0.96996 * 120.00119 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.46752 * 306.04341 * 14 4 3 34 34 H 1.08993 * 109.47088 * 186.04453 * 14 4 3 35 35 H 1.09007 * 109.47170 * 60.00578 * 20 18 17 36 36 H 1.09001 * 109.47704 * 180.02562 * 20 18 17 37 37 H 1.08995 * 109.47569 * 300.00715 * 20 18 17 38 38 H 1.09006 * 109.46736 * 179.97438 * 22 21 18 39 39 H 1.08996 * 109.47026 * 60.00470 * 22 21 18 40 40 H 1.08993 * 109.47389 * 300.00048 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9816 1.3403 1.1463 5 6 2.2478 1.2140 2.4126 6 6 1.4884 2.4875 2.6823 7 1 1.6116 3.3384 2.0286 8 6 0.6366 2.5664 3.7635 9 7 0.4864 1.5301 4.5593 10 14 -0.3052 4.1447 4.0974 11 1 -1.6094 4.1023 3.3886 12 1 -0.5395 4.2818 5.5574 13 1 0.4848 5.3046 3.6119 14 6 4.0113 0.2992 1.0284 15 6 4.8989 0.6018 -0.1513 16 7 5.9967 1.3189 -0.1389 17 6 6.4452 1.3160 -1.4069 18 6 7.6851 2.0050 -1.9158 19 1 8.3155 2.2882 -1.0729 20 6 7.2874 3.2578 -2.6989 21 8 8.4060 1.1169 -2.7724 22 6 9.8192 1.3289 -2.7726 23 7 5.6101 0.6148 -2.1134 24 8 4.7173 0.1912 -1.4100 25 1 -0.5399 0.9353 0.0004 26 1 -0.5401 -0.9352 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3577 2.1322 0.0742 29 1 2.6334 1.3956 -0.9248 30 1 1.5480 0.3811 2.3454 31 1 2.9522 1.0322 3.2242 32 1 -0.1132 1.5855 5.3197 33 1 3.5333 -0.6698 0.8844 34 1 4.6112 0.2769 1.9381 35 1 6.7375 3.9353 -2.0455 36 1 8.1841 3.7560 -3.0674 37 1 6.6571 2.9746 -3.5418 38 1 10.2935 0.6155 -3.4465 39 1 10.2077 1.1888 -1.7639 40 1 10.0343 2.3437 -3.1071 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292263815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:49 Heat of formation + Delta-G solvation = 32.853376 kcal Electronic energy + Delta-G solvation = -22120.582132 eV Core-core repulsion = 18746.225119 eV Total energy + Delta-G solvation = -3374.357013 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.69001 -39.52451 -39.23637 -36.87054 -34.88518 -34.51849 -33.31634 -31.95350 -29.71667 -28.22038 -27.78409 -26.12967 -25.82329 -24.27594 -22.83209 -22.01888 -20.46254 -19.27351 -18.66032 -18.30608 -17.62145 -17.06646 -16.83238 -16.49032 -16.26576 -16.03300 -15.57088 -15.44185 -14.44925 -14.27786 -14.07118 -13.93190 -13.69704 -13.53552 -13.18187 -12.99536 -12.84668 -12.70816 -12.66277 -12.52422 -12.31576 -12.23390 -12.15063 -12.03288 -11.96507 -11.36263 -11.12092 -10.82604 -10.54663 -10.18058 -9.12514 -8.14077 -6.21395 0.02828 1.05276 1.43832 1.45486 1.47827 1.55761 1.71518 2.13773 2.44860 2.88094 3.11796 3.20008 3.33933 3.70206 3.92917 4.03871 4.07074 4.18450 4.34968 4.38561 4.43534 4.48405 4.52122 4.60984 4.62963 4.74206 4.82588 4.88881 4.97397 5.07820 5.09559 5.23347 5.33303 5.67470 5.75079 5.90897 6.00252 6.07270 6.24482 6.50144 6.91831 7.07993 7.46654 8.95883 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.003817 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.244210 B = 7334.408768 C = 7856.050494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.194 4.194 3 C 0.091 3.909 4 N -0.533 5.533 5 C 0.210 3.790 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.956 3.044 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.270 1.270 14 C 0.140 3.860 15 C 0.211 3.789 16 N -0.484 5.484 17 C 0.159 3.841 18 C 0.180 3.820 19 H 0.109 0.891 20 C -0.162 4.162 21 O -0.402 6.402 22 C 0.023 3.977 23 N -0.383 5.383 24 O 0.074 5.926 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.000 1.000 31 H 0.011 0.989 32 H 0.263 0.737 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.916 -1.371 -12.619 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.213 4.213 3 C -0.037 4.037 4 N -0.258 5.258 5 C 0.084 3.916 6 C -0.554 4.554 7 H 0.073 0.927 8 C -0.187 4.187 9 N -0.568 5.568 10 Si 0.782 3.218 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.195 1.195 14 C 0.011 3.989 15 C -0.010 4.010 16 N -0.219 5.219 17 C -0.114 4.114 18 C 0.120 3.880 19 H 0.126 0.874 20 C -0.220 4.220 21 O -0.320 6.320 22 C -0.073 4.073 23 N -0.092 5.092 24 O 0.016 5.984 25 H 0.106 0.894 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.018 0.982 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.438 -0.979 -13.253 18.899 hybrid contribution -1.093 -0.036 0.738 1.319 sum 12.345 -1.016 -12.515 17.608 Atomic orbital electron populations 1.23888 0.96034 1.01964 0.99008 1.23481 0.97049 0.99290 1.01500 1.21218 0.94515 0.95478 0.92461 1.62288 1.14320 1.44820 1.04362 1.19456 0.91519 0.96193 0.84386 1.21331 1.24140 0.99180 1.10798 0.92686 1.25671 0.97748 0.99377 0.95915 1.70039 1.38615 1.31426 1.16716 0.85579 0.78948 0.80107 0.77170 1.20027 1.20963 1.19484 1.20682 0.92019 0.95938 0.90287 1.28928 0.93255 0.90860 0.87953 1.71881 1.10761 1.19462 1.19777 1.26123 1.00055 0.99209 0.86039 1.20209 0.86006 0.87856 0.93923 0.87369 1.22217 1.03882 0.95449 1.00497 1.87950 1.21012 1.57939 1.65113 1.23122 0.78386 1.03155 1.02621 1.74584 1.00328 1.15556 1.18722 1.85315 1.39035 1.55810 1.18244 0.89394 0.87248 0.86462 0.91140 0.91508 0.98234 0.97052 0.92800 0.89243 0.86104 0.91057 0.88090 0.92527 0.87968 0.92845 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.57 14.32 67.78 0.97 -4.60 16 2 C -0.19 -6.44 7.42 25.64 0.19 -6.25 16 3 C 0.09 3.35 5.49 85.55 0.47 3.82 16 4 N -0.53 -21.36 4.65 -909.97 -4.23 -25.59 16 5 C 0.21 10.12 4.59 85.56 0.39 10.52 16 6 C -0.52 -27.72 8.53 25.60 0.22 -27.50 16 7 H 0.05 2.98 7.66 -2.91 -0.02 2.96 16 8 C 0.01 0.62 5.46 84.65 0.46 1.09 16 9 N -0.93 -52.97 13.29 21.45 0.28 -52.69 16 10 Si 0.96 43.14 29.54 68.60 2.03 45.16 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 14 C 0.14 4.58 5.43 85.56 0.46 5.04 16 15 C 0.21 6.93 7.07 88.38 0.63 7.56 16 16 N -0.48 -16.42 11.55 -303.23 -3.50 -19.92 16 17 C 0.16 5.00 7.10 138.46 0.98 5.98 16 18 C 0.18 4.26 3.27 29.85 0.10 4.36 16 19 H 0.11 2.18 7.79 -2.39 -0.02 2.16 16 20 C -0.16 -3.22 9.51 71.98 0.68 -2.53 16 21 O -0.40 -9.48 10.33 -148.98 -1.54 -11.01 16 22 C 0.02 0.31 10.82 113.37 1.23 1.54 16 23 N -0.38 -12.88 12.16 -60.36 -0.73 -13.61 16 24 O 0.07 2.42 10.61 74.84 0.79 3.21 16 25 H 0.09 3.02 7.84 -2.91 -0.02 2.99 16 26 H 0.11 3.06 8.06 -2.91 -0.02 3.04 16 27 H 0.12 3.45 6.80 -2.91 -0.02 3.43 16 28 H 0.07 2.87 7.04 -2.39 -0.02 2.85 16 29 H 0.07 2.31 6.62 -2.39 -0.02 2.29 16 30 H 0.00 -0.01 6.71 -2.39 -0.02 -0.02 16 31 H 0.01 0.59 7.81 -2.39 -0.02 0.57 16 32 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.09 2.54 6.34 -2.39 -0.02 2.52 16 34 H 0.12 3.82 7.86 -2.39 -0.02 3.81 16 35 H 0.07 1.46 8.14 -2.38 -0.02 1.45 16 36 H 0.10 1.37 7.87 -2.39 -0.02 1.35 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.05 0.65 8.08 -2.39 -0.02 0.63 16 40 H 0.06 0.64 7.87 -2.39 -0.02 0.62 16 Total: -1.00 -64.30 339.53 0.91 -63.39 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.03 Total: 12.04 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 6.78 Total: -0.99 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -8.18 Total: -111.81 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.75 Total: -7.80 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -64.30 0.91 -63.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292263815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.248 kcal (2) G-P(sol) polarization free energy of solvation -64.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds