Wall clock time and date at job start Tue Mar 31 2020 05:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00107 * 2 1 4 4 N 1.46896 * 109.47767 * 124.99805 * 3 2 1 5 5 C 1.46900 * 110.99666 * 288.49494 * 4 3 2 6 6 C 1.50701 * 109.46942 * 160.15538 * 5 4 3 7 7 H 1.07999 * 120.00050 * 4.50238 * 6 5 4 8 8 C 1.37884 * 119.99891 * 184.50174 * 6 5 4 9 9 N 1.31517 * 119.99769 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00082 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47058 * 89.99938 * 10 8 6 12 12 H 1.48494 * 109.46869 * 210.00515 * 10 8 6 13 13 H 1.48500 * 109.47149 * 330.00063 * 10 8 6 14 14 C 1.46898 * 111.00243 * 164.54112 * 4 3 2 15 15 C 1.50703 * 109.46807 * 293.95168 * 14 4 3 16 16 N 1.31126 * 126.55111 * 89.71661 * 15 14 4 17 17 C 1.34490 * 105.61428 * 179.91369 * 16 15 14 18 18 C 1.50709 * 126.28394 * 180.12804 * 17 16 15 19 19 H 1.08998 * 109.46982 * 345.23523 * 18 17 16 20 20 C 1.53003 * 109.47146 * 105.24173 * 18 17 16 21 21 O 1.42899 * 109.46870 * 225.23722 * 18 17 16 22 22 C 1.42900 * 113.99902 * 150.00167 * 21 18 17 23 23 N 1.29944 * 107.42707 * 0.34664 * 17 16 15 24 24 O 1.21300 * 110.24672 * 359.78230 * 23 17 16 25 25 H 1.07995 * 119.99854 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99729 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.00211 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46954 * 4.99136 * 3 2 1 29 29 H 1.09008 * 109.47238 * 245.00270 * 3 2 1 30 30 H 1.08994 * 109.47268 * 280.15503 * 5 4 3 31 31 H 1.09004 * 109.47469 * 40.15768 * 5 4 3 32 32 H 0.96997 * 119.99534 * 179.97438 * 9 8 6 33 33 H 1.08993 * 109.47128 * 53.95324 * 14 4 3 34 34 H 1.09005 * 109.46518 * 173.95633 * 14 4 3 35 35 H 1.08991 * 109.46977 * 180.02562 * 20 18 17 36 36 H 1.09000 * 109.46696 * 299.99641 * 20 18 17 37 37 H 1.09000 * 109.47050 * 59.99447 * 20 18 17 38 38 H 1.09001 * 109.46561 * 180.02562 * 22 21 18 39 39 H 1.08997 * 109.46763 * 299.99773 * 22 21 18 40 40 H 1.08997 * 109.47303 * 60.00046 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3321 1.1345 5 6 2.2749 1.4777 2.4058 6 6 3.1578 1.0231 3.5393 7 1 4.1791 0.7310 3.3446 8 6 2.6616 0.9801 4.8251 9 7 3.4320 0.5829 5.8142 10 14 0.8953 1.4861 5.1620 11 1 0.0099 0.2996 5.0461 12 1 0.7942 2.0472 6.5331 13 1 0.4778 2.5136 4.1746 14 6 3.9942 2.3976 0.9704 15 6 4.8754 2.0829 -0.2109 16 7 4.6681 2.4373 -1.4562 17 6 5.7066 1.9405 -2.1516 18 6 5.9350 2.0797 -3.6348 19 1 5.0152 2.4146 -4.1142 20 6 7.0435 3.1040 -3.8862 21 8 6.3223 0.8159 -4.1777 22 6 5.9265 0.6213 -5.5369 23 7 6.4743 1.3145 -1.3107 24 8 6.0146 1.3844 -0.1903 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1316 0.0894 29 1 2.6213 1.4026 -0.9315 30 1 2.0047 2.5234 2.5525 31 1 1.3711 0.8688 2.3825 32 1 3.0831 0.5530 6.7187 33 1 3.4870 3.3476 0.8024 34 1 4.6044 2.4656 1.8711 35 1 7.2083 3.2050 -4.9588 36 1 6.7480 4.0680 -3.4720 37 1 7.9632 2.7690 -3.4067 38 1 6.2571 -0.3610 -5.8745 39 1 4.8409 0.6844 -5.6117 40 1 6.3791 1.3918 -6.1611 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292263816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:53 Heat of formation + Delta-G solvation = 59.237242 kcal Electronic energy + Delta-G solvation = -22132.599511 eV Core-core repulsion = 18759.386589 eV Total energy + Delta-G solvation = -3373.212923 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.36590 -38.63298 -37.65609 -35.57522 -33.58930 -32.97227 -32.07705 -30.90478 -28.34609 -27.21670 -27.00761 -24.81657 -24.07143 -22.96693 -21.14721 -20.43533 -19.36217 -17.86132 -17.49343 -16.88529 -16.78076 -15.80514 -15.48927 -15.32546 -15.06373 -14.68375 -13.84629 -13.77724 -13.57777 -13.19445 -13.06481 -12.78568 -12.47770 -12.38334 -12.04584 -11.83932 -11.70834 -11.44124 -11.37689 -11.32009 -10.87133 -10.73002 -10.65543 -10.59427 -10.12131 -10.00273 -9.79172 -9.35973 -9.01160 -8.60702 -7.70287 -6.09232 -4.07844 1.36397 2.24496 2.61674 3.07278 3.16075 3.26206 3.33741 3.34733 3.89606 4.26817 4.37913 4.59809 4.69671 4.78987 4.99861 5.09033 5.17535 5.22825 5.32023 5.35119 5.41193 5.42641 5.48858 5.60544 5.73775 5.82432 5.85561 5.98093 6.03988 6.13790 6.24984 6.67992 6.71044 6.79227 6.94758 7.03945 7.47265 7.64946 7.76805 8.37924 8.55800 8.99995 9.51317 11.03557 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.004131 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.436483 B = 6776.767971 C = 7486.920893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C 0.068 3.932 4 N -0.518 5.518 5 C 0.166 3.834 6 C -0.515 4.515 7 H 0.084 0.916 8 C 0.072 3.928 9 N -0.896 5.896 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.146 3.854 15 C 0.214 3.786 16 N -0.488 5.488 17 C 0.157 3.843 18 C 0.183 3.817 19 H 0.091 0.909 20 C -0.168 4.168 21 O -0.375 6.375 22 C 0.031 3.969 23 N -0.363 5.363 24 O 0.094 5.906 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.112 0.888 28 H 0.036 0.964 29 H 0.080 0.920 30 H -0.005 1.005 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 4.887 -19.371 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.141 4.141 3 C -0.060 4.060 4 N -0.244 5.244 5 C 0.041 3.959 6 C -0.553 4.553 7 H 0.102 0.898 8 C -0.130 4.130 9 N -0.534 5.534 10 Si 0.699 3.301 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.193 1.193 14 C 0.016 3.984 15 C -0.006 4.006 16 N -0.224 5.224 17 C -0.117 4.117 18 C 0.124 3.876 19 H 0.109 0.891 20 C -0.226 4.226 21 O -0.293 6.293 22 C -0.066 4.066 23 N -0.069 5.069 24 O 0.033 5.967 25 H 0.114 0.886 26 H 0.109 0.891 27 H 0.130 0.870 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.013 0.987 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.145 0.855 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.930 4.055 -19.643 20.150 hybrid contribution -1.636 1.005 0.284 1.941 sum 0.294 5.059 -19.359 20.011 Atomic orbital electron populations 1.23730 0.95899 1.01362 1.03402 1.22853 0.95406 0.98703 0.97156 1.21409 0.94737 0.94702 0.95162 1.61910 1.15268 1.43837 1.03393 1.20250 0.94646 0.95356 0.85695 1.21016 1.00211 1.44505 0.89556 0.89805 1.24866 0.97237 0.94776 0.96127 1.69888 1.36123 1.47247 1.00153 0.86921 0.85974 0.79420 0.77812 1.20082 1.21154 1.19258 1.20626 0.92492 0.94116 0.91192 1.29015 0.87226 0.89100 0.95272 1.71833 1.23090 1.25390 1.02046 1.25348 0.89457 0.97922 0.98944 1.19951 0.98615 0.85244 0.83813 0.89105 1.22242 0.99132 0.98508 1.02712 1.88015 1.79097 1.34721 1.27424 1.22865 0.99302 1.02221 0.82192 1.74649 1.21917 1.19726 0.90633 1.85376 1.32359 1.53984 1.24985 0.88645 0.89069 0.87040 0.94574 0.90220 0.98694 0.94630 0.92562 0.90704 0.85484 0.91086 0.90917 0.91059 0.89135 0.93632 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.04 14.32 29.01 0.42 -2.63 16 2 C -0.12 -2.04 8.73 -36.03 -0.31 -2.35 16 3 C 0.07 1.16 5.28 -4.98 -0.03 1.13 16 4 N -0.52 -10.16 4.36 -238.96 -1.04 -11.21 16 5 C 0.17 3.73 3.65 -4.98 -0.02 3.71 16 6 C -0.51 -13.79 9.17 -34.44 -0.32 -14.10 16 7 H 0.08 2.45 7.92 -52.49 -0.42 2.03 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -26.57 13.96 55.43 0.77 -25.79 16 10 Si 0.87 20.65 27.38 -169.99 -4.65 16.00 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.27 -6.05 6.67 56.52 0.38 -5.67 16 14 C 0.15 2.49 5.41 -4.98 -0.03 2.47 16 15 C 0.21 3.64 7.18 -13.06 -0.09 3.54 16 16 N -0.49 -7.92 10.46 -9.87 -0.10 -8.02 16 17 C 0.16 2.48 7.10 -156.37 -1.11 1.37 16 18 C 0.18 2.23 3.27 -27.88 -0.09 2.14 16 19 H 0.09 0.94 7.79 -51.93 -0.40 0.54 16 20 C -0.17 -1.64 9.51 37.16 0.35 -1.28 16 21 O -0.37 -4.82 10.33 -35.23 -0.36 -5.18 16 22 C 0.03 0.25 10.82 101.05 1.09 1.35 16 23 N -0.36 -6.45 12.16 30.90 0.38 -6.07 16 24 O 0.09 1.70 11.31 18.11 0.20 1.90 16 25 H 0.10 1.26 8.06 -52.49 -0.42 0.83 16 26 H 0.09 1.26 7.84 -52.48 -0.41 0.85 16 27 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 28 H 0.04 0.59 7.71 -51.93 -0.40 0.19 16 29 H 0.08 1.34 6.09 -51.92 -0.32 1.02 16 30 H 0.00 -0.10 7.37 -51.93 -0.38 -0.48 16 31 H 0.04 0.82 6.28 -51.93 -0.33 0.50 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 34 H 0.13 2.26 7.34 -51.93 -0.38 1.87 16 35 H 0.07 0.52 7.87 -51.93 -0.41 0.11 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.34 8.08 -51.93 -0.42 -0.08 16 40 H 0.04 0.28 7.87 -51.93 -0.41 -0.13 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -30.93 339.88 -5.89 -36.82 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.97 Total: -0.80 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -0.23 Total: -2.76 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.00 Total: -51.09 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: -0.16 Total: -3.28 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.65 Total: 16.00 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.93 -5.89 -36.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292263816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.054 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds