Wall clock time and date at job start Tue Mar 31 2020 05:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00107 * 2 1 4 4 N 1.46896 * 109.47767 * 124.99805 * 3 2 1 5 5 C 1.46900 * 110.99666 * 288.49494 * 4 3 2 6 6 C 1.50701 * 109.46942 * 160.15538 * 5 4 3 7 7 H 1.07999 * 120.00050 * 4.50238 * 6 5 4 8 8 C 1.37884 * 119.99891 * 184.50174 * 6 5 4 9 9 N 1.31517 * 119.99769 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00082 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47058 * 89.99938 * 10 8 6 12 12 H 1.48494 * 109.46869 * 210.00515 * 10 8 6 13 13 H 1.48500 * 109.47149 * 330.00063 * 10 8 6 14 14 C 1.46898 * 111.00243 * 164.54112 * 4 3 2 15 15 C 1.50703 * 109.46807 * 293.95168 * 14 4 3 16 16 N 1.31126 * 126.55111 * 89.71661 * 15 14 4 17 17 C 1.34490 * 105.61428 * 179.91369 * 16 15 14 18 18 C 1.50709 * 126.28394 * 180.12804 * 17 16 15 19 19 H 1.08998 * 109.46982 * 345.23523 * 18 17 16 20 20 C 1.53003 * 109.47146 * 105.24173 * 18 17 16 21 21 O 1.42899 * 109.46870 * 225.23722 * 18 17 16 22 22 C 1.42900 * 113.99902 * 150.00167 * 21 18 17 23 23 N 1.29944 * 107.42707 * 0.34664 * 17 16 15 24 24 O 1.21300 * 110.24672 * 359.78230 * 23 17 16 25 25 H 1.07995 * 119.99854 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99729 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.00211 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46954 * 4.99136 * 3 2 1 29 29 H 1.09008 * 109.47238 * 245.00270 * 3 2 1 30 30 H 1.08994 * 109.47268 * 280.15503 * 5 4 3 31 31 H 1.09004 * 109.47469 * 40.15768 * 5 4 3 32 32 H 0.96997 * 119.99534 * 179.97438 * 9 8 6 33 33 H 1.08993 * 109.47128 * 53.95324 * 14 4 3 34 34 H 1.09005 * 109.46518 * 173.95633 * 14 4 3 35 35 H 1.08991 * 109.46977 * 180.02562 * 20 18 17 36 36 H 1.09000 * 109.46696 * 299.99641 * 20 18 17 37 37 H 1.09000 * 109.47050 * 59.99447 * 20 18 17 38 38 H 1.09001 * 109.46561 * 180.02562 * 22 21 18 39 39 H 1.08997 * 109.46763 * 299.99773 * 22 21 18 40 40 H 1.08997 * 109.47303 * 60.00046 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3321 1.1345 5 6 2.2749 1.4777 2.4058 6 6 3.1578 1.0231 3.5393 7 1 4.1791 0.7310 3.3446 8 6 2.6616 0.9801 4.8251 9 7 3.4320 0.5829 5.8142 10 14 0.8953 1.4861 5.1620 11 1 0.0099 0.2996 5.0461 12 1 0.7942 2.0472 6.5331 13 1 0.4778 2.5136 4.1746 14 6 3.9942 2.3976 0.9704 15 6 4.8754 2.0829 -0.2109 16 7 4.6681 2.4373 -1.4562 17 6 5.7066 1.9405 -2.1516 18 6 5.9350 2.0797 -3.6348 19 1 5.0152 2.4146 -4.1142 20 6 7.0435 3.1040 -3.8862 21 8 6.3223 0.8159 -4.1777 22 6 5.9265 0.6213 -5.5369 23 7 6.4743 1.3145 -1.3107 24 8 6.0146 1.3844 -0.1903 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1316 0.0894 29 1 2.6213 1.4026 -0.9315 30 1 2.0047 2.5234 2.5525 31 1 1.3711 0.8688 2.3825 32 1 3.0831 0.5530 6.7187 33 1 3.4870 3.3476 0.8024 34 1 4.6044 2.4656 1.8711 35 1 7.2083 3.2050 -4.9588 36 1 6.7480 4.0680 -3.4720 37 1 7.9632 2.7690 -3.4067 38 1 6.2571 -0.3610 -5.8745 39 1 4.8409 0.6844 -5.6117 40 1 6.3791 1.3918 -6.1611 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292263816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:53 Heat of formation + Delta-G solvation = 36.234263 kcal Electronic energy + Delta-G solvation = -22133.596995 eV Core-core repulsion = 18759.386589 eV Total energy + Delta-G solvation = -3374.210407 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.68154 -39.51626 -39.14241 -36.83156 -34.94136 -34.72021 -33.53615 -31.95888 -30.14515 -28.51323 -27.77432 -25.91739 -25.60787 -24.31018 -22.66718 -21.73317 -20.64478 -19.22812 -18.92114 -18.67126 -17.72222 -16.86804 -16.83946 -16.49402 -16.25161 -16.23422 -15.53143 -15.18178 -14.59340 -14.42705 -14.22910 -13.97691 -13.81903 -13.52244 -13.48297 -13.12679 -12.90619 -12.80686 -12.55356 -12.44048 -12.39538 -12.27694 -12.01202 -11.93613 -11.84350 -11.49636 -11.14167 -10.83384 -10.72003 -10.24951 -9.22462 -8.21775 -6.25350 0.01970 0.99947 1.39213 1.41828 1.42007 1.52034 1.75633 2.12900 2.39835 2.88436 3.02565 3.13703 3.29694 3.70290 3.92937 4.03202 4.06229 4.19787 4.27887 4.40131 4.42923 4.51275 4.52604 4.61152 4.64997 4.69084 4.74081 4.81922 4.84073 4.89952 5.00336 5.09175 5.10492 5.56037 5.71620 5.76171 6.00700 6.01660 6.14241 6.57744 6.82255 7.05984 7.37845 8.94676 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.004131 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.436483 B = 6776.767971 C = 7486.920893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.155 4.155 3 C 0.075 3.925 4 N -0.539 5.539 5 C 0.179 3.821 6 C -0.515 4.515 7 H 0.041 0.959 8 C 0.012 3.988 9 N -0.947 5.947 10 Si 0.941 3.059 11 H -0.270 1.270 12 H -0.286 1.286 13 H -0.243 1.243 14 C 0.149 3.851 15 C 0.213 3.787 16 N -0.483 5.483 17 C 0.163 3.837 18 C 0.179 3.821 19 H 0.112 0.888 20 C -0.161 4.161 21 O -0.406 6.406 22 C 0.023 3.977 23 N -0.387 5.387 24 O 0.068 5.932 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.007 0.993 31 H 0.038 0.962 32 H 0.266 0.734 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.226 6.216 -21.595 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.174 4.174 3 C -0.052 4.052 4 N -0.265 5.265 5 C 0.053 3.947 6 C -0.554 4.554 7 H 0.060 0.940 8 C -0.186 4.186 9 N -0.588 5.588 10 Si 0.765 3.235 11 H -0.195 1.195 12 H -0.212 1.212 13 H -0.166 1.166 14 C 0.020 3.980 15 C -0.007 4.007 16 N -0.219 5.219 17 C -0.111 4.111 18 C 0.120 3.880 19 H 0.130 0.870 20 C -0.219 4.219 21 O -0.324 6.324 22 C -0.072 4.072 23 N -0.097 5.097 24 O 0.013 5.987 25 H 0.130 0.870 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.025 0.975 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.072 0.928 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.333 5.388 -21.882 22.538 hybrid contribution -0.873 0.536 0.856 1.334 sum -1.206 5.924 -21.026 21.878 Atomic orbital electron populations 1.23991 0.95162 1.02894 1.00040 1.22824 0.96265 0.98022 1.00270 1.21382 0.94476 0.95530 0.93836 1.61705 1.16132 1.45359 1.03297 1.19955 0.93737 0.95504 0.85529 1.21257 0.99162 1.43621 0.91343 0.94041 1.25776 1.02079 0.94908 0.95825 1.70054 1.38620 1.49406 1.00741 0.85808 0.79967 0.79696 0.78062 1.19538 1.21162 1.16605 1.20570 0.92003 0.94607 0.90814 1.28982 0.87032 0.89094 0.95603 1.71850 1.23129 1.25319 1.01554 1.26177 0.88366 0.96037 1.00526 1.20280 1.00441 0.85791 0.81499 0.87025 1.22218 0.97368 0.97776 1.04552 1.87974 1.79608 1.35077 1.29764 1.23113 1.00109 1.03587 0.80403 1.74656 1.23016 1.21286 0.90778 1.85355 1.33022 1.54738 1.25627 0.87018 0.87557 0.88407 0.93097 0.90200 0.97508 0.94440 0.92548 0.88121 0.87051 0.88127 0.90338 0.92770 0.88337 0.92830 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.83 14.32 67.78 0.97 -3.86 16 2 C -0.16 -4.91 8.73 25.64 0.22 -4.69 16 3 C 0.07 2.43 5.28 85.56 0.45 2.88 16 4 N -0.54 -20.90 4.36 -909.94 -3.97 -24.87 16 5 C 0.18 7.85 3.65 85.56 0.31 8.17 16 6 C -0.52 -28.19 9.17 25.60 0.23 -27.96 16 7 H 0.04 2.55 7.92 -2.91 -0.02 2.53 16 8 C 0.01 0.65 5.47 84.66 0.46 1.11 16 9 N -0.95 -57.86 13.96 21.45 0.30 -57.56 16 10 Si 0.94 41.94 27.38 68.60 1.88 43.82 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.24 -9.76 6.67 99.48 0.66 -9.10 16 14 C 0.15 5.11 5.41 85.56 0.46 5.57 16 15 C 0.21 7.28 7.18 88.38 0.63 7.92 16 16 N -0.48 -15.23 10.46 -303.23 -3.17 -18.40 16 17 C 0.16 5.05 7.10 138.47 0.98 6.03 16 18 C 0.18 4.05 3.27 29.85 0.10 4.15 16 19 H 0.11 2.01 7.79 -2.39 -0.02 1.99 16 20 C -0.16 -2.82 9.51 71.98 0.68 -2.13 16 21 O -0.41 -9.87 10.33 -148.98 -1.54 -11.41 16 22 C 0.02 0.33 10.82 113.37 1.23 1.56 16 23 N -0.39 -14.01 12.16 -60.35 -0.73 -14.74 16 24 O 0.07 2.57 11.31 74.88 0.85 3.42 16 25 H 0.11 2.56 8.06 -2.91 -0.02 2.54 16 26 H 0.11 2.50 7.84 -2.91 -0.02 2.47 16 27 H 0.10 3.31 8.06 -2.91 -0.02 3.29 16 28 H 0.05 1.50 7.71 -2.39 -0.02 1.49 16 29 H 0.08 2.57 6.09 -2.38 -0.01 2.55 16 30 H 0.01 0.30 7.37 -2.39 -0.02 0.28 16 31 H 0.04 1.65 6.28 -2.39 -0.01 1.63 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.10 2.90 8.12 -2.39 -0.02 2.88 16 34 H 0.11 4.12 7.34 -2.38 -0.02 4.10 16 35 H 0.10 1.15 7.87 -2.39 -0.02 1.13 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 0.67 8.08 -2.39 -0.02 0.65 16 40 H 0.07 0.64 7.87 -2.39 -0.02 0.63 16 Total: -1.00 -68.27 339.88 1.33 -66.94 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.98 Total: 14.05 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 6.75 Total: -1.25 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -7.58 Total: -115.56 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.69 Total: -7.99 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.88 Total: 43.82 kcal Total: -68.27 1.33 -66.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292263816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.169 kcal (2) G-P(sol) polarization free energy of solvation -68.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds