Wall clock time and date at job start Tue Mar 31 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47610 * 2 1 4 4 C 1.53003 * 109.46775 * 119.99596 * 2 1 3 5 5 C 1.50700 * 109.46985 * 183.57189 * 4 2 1 6 6 H 1.07996 * 120.00129 * 5.08553 * 5 4 2 7 7 C 1.37884 * 119.99796 * 185.08396 * 5 4 2 8 8 N 1.31521 * 119.99938 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 119.99924 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47180 * 60.00231 * 9 7 5 11 11 H 1.48506 * 109.47280 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47347 * 299.99987 * 9 7 5 13 13 N 1.46903 * 109.47148 * 239.99321 * 2 1 3 14 14 C 1.46841 * 110.99581 * 72.96288 * 13 2 1 15 15 C 1.53042 * 109.52355 * 174.16046 * 14 13 2 16 16 C 1.53124 * 109.27547 * 59.17393 * 15 14 13 17 17 C 1.53119 * 109.16019 * 302.34750 * 16 15 14 18 18 H 1.08998 * 109.53624 * 297.69019 * 17 16 15 19 19 C 1.50707 * 109.49864 * 177.59753 * 17 16 15 20 20 N 1.29192 * 125.34886 * 335.19833 * 19 17 16 21 21 N 1.40282 * 107.86482 * 180.02562 * 20 19 17 22 22 H 0.96997 * 126.63507 * 180.02562 * 21 20 19 23 23 C 1.35030 * 106.72354 * 0.26236 * 21 20 19 24 24 O 1.21715 * 126.36872 * 179.72035 * 23 21 20 25 25 O 1.34316 * 107.25741 * 359.58141 * 23 21 20 26 26 C 1.46846 * 110.99991 * 308.75150 * 13 2 1 27 27 H 1.09001 * 109.46409 * 60.00363 * 1 2 3 28 28 H 1.08989 * 109.47317 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47166 * 300.00459 * 1 2 3 30 30 H 1.08996 * 109.47307 * 303.57783 * 4 2 1 31 31 H 1.08999 * 109.46951 * 63.57361 * 4 2 1 32 32 H 0.96994 * 119.99719 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.46643 * 294.17090 * 14 13 2 34 34 H 1.08993 * 109.46817 * 54.15491 * 14 13 2 35 35 H 1.08999 * 109.50580 * 179.11895 * 15 14 13 36 36 H 1.09002 * 109.49923 * 299.19957 * 15 14 13 37 37 H 1.09003 * 109.51725 * 182.44318 * 16 15 14 38 38 H 1.08998 * 109.52036 * 62.25709 * 16 15 14 39 39 H 1.08994 * 109.46551 * 65.82424 * 26 13 2 40 40 H 1.09001 * 109.44972 * 305.84650 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5444 -0.6450 1.2944 6 1 4.0780 -0.0645 0.5565 7 6 4.2395 -1.3164 2.2779 8 7 3.5896 -2.0237 3.1763 9 14 6.1041 -1.2215 2.3343 10 1 6.5229 0.1934 2.5014 11 1 6.6064 -2.0252 3.4776 12 1 6.6656 -1.7577 1.0684 13 7 2.0197 -0.6926 -1.1994 14 6 1.8164 0.1274 -2.4004 15 6 2.4665 -0.5586 -3.6041 16 6 1.8403 -1.9427 -3.7962 17 6 2.0234 -2.7594 -2.5141 18 1 3.0868 -2.9008 -2.3207 19 6 1.3582 -4.1023 -2.6737 20 7 0.3810 -4.3614 -3.4781 21 7 0.0489 -5.7162 -3.3294 22 1 -0.6471 -6.1970 -3.8040 23 6 0.8820 -6.2200 -2.3937 24 8 0.9002 -7.3666 -1.9858 25 8 1.6889 -5.2213 -1.9993 26 6 1.3861 -2.0097 -1.3420 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6252 -0.2457 2.1381 31 1 1.7299 -1.7657 1.2179 32 1 4.0786 -2.4964 3.8679 33 1 0.7483 0.2456 -2.5830 34 1 2.2702 1.1073 -2.2523 35 1 2.3019 0.0426 -4.4983 36 1 3.5371 -0.6641 -3.4284 37 1 2.3304 -2.4522 -4.6259 38 1 0.7771 -1.8348 -4.0108 39 1 0.3201 -1.8815 -1.5295 40 1 1.5275 -2.5817 -0.4250 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298633451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:47 Heat of formation + Delta-G solvation = -12.731519 kcal Electronic energy + Delta-G solvation = -22942.977919 eV Core-core repulsion = 19566.644197 eV Total energy + Delta-G solvation = -3376.333722 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.51353 -39.29805 -37.98399 -35.93351 -35.23605 -32.76662 -32.03100 -29.87078 -29.53428 -27.32749 -24.91946 -24.23191 -23.46686 -22.87182 -21.79029 -19.94935 -18.98026 -18.72690 -17.60750 -16.71462 -16.17345 -16.06242 -15.64228 -14.85560 -14.67372 -14.41929 -14.08946 -13.61311 -13.55192 -13.13922 -12.73653 -12.54678 -12.46036 -12.16467 -12.09602 -11.79048 -11.55889 -11.31416 -11.10157 -11.02970 -10.72834 -10.63705 -10.56774 -10.42856 -10.20940 -10.01925 -9.30535 -9.19867 -8.99729 -8.25605 -7.60650 -5.88335 -3.86580 1.42383 1.77292 2.12879 2.59700 3.41383 3.46322 3.48422 4.07199 4.40548 4.56835 4.72671 4.83111 4.92590 5.06425 5.25550 5.38318 5.45825 5.48770 5.64242 5.67686 5.75499 5.78820 5.88604 5.95030 6.00061 6.05411 6.17418 6.22153 6.24287 6.40857 6.50104 6.61316 6.92413 7.25403 7.44128 7.51215 7.59098 7.81654 7.94376 8.11190 8.55811 9.18367 9.75192 11.23560 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013732 B = 0.005868 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.502118 B = 4770.134237 C = 5759.385196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.089 3.911 3 H 0.073 0.927 4 C 0.029 3.971 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.505 5.505 14 C 0.048 3.952 15 C -0.114 4.114 16 C -0.106 4.106 17 C -0.003 4.003 18 H 0.124 0.876 19 C 0.272 3.728 20 N -0.271 5.271 21 N -0.556 5.556 22 H 0.460 0.540 23 C 0.606 3.394 24 O -0.489 6.489 25 O -0.261 6.261 26 C 0.066 3.934 27 H 0.041 0.959 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.016 0.984 31 H 0.022 0.978 32 H 0.258 0.742 33 H 0.028 0.972 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.869 0.538 -15.726 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.019 4.019 3 H 0.091 0.909 4 C -0.008 4.008 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.543 5.543 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.203 1.203 13 N -0.229 5.229 14 C -0.080 4.080 15 C -0.152 4.152 16 C -0.144 4.144 17 C -0.024 4.024 18 H 0.142 0.858 19 C 0.046 3.954 20 N -0.102 5.102 21 N -0.319 5.319 22 H 0.310 0.690 23 C 0.357 3.643 24 O -0.370 6.370 25 O -0.156 6.156 26 C -0.064 4.064 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.657 -0.007 -15.692 17.046 hybrid contribution 0.121 -0.678 0.291 0.748 sum -6.536 -0.685 -15.401 16.744 Atomic orbital electron populations 1.22536 0.99623 1.01367 1.00862 1.21933 0.90098 0.98310 0.91518 0.90874 1.19208 0.96494 0.95480 0.89643 1.21069 0.91410 1.29196 1.11263 0.92222 1.24996 0.97975 0.95815 0.95994 1.69944 1.35313 1.32660 1.16406 0.86709 0.86448 0.77762 0.77312 1.20547 1.21710 1.20329 1.61965 1.57567 1.01420 1.01921 1.22162 0.97919 0.97284 0.90668 1.21577 1.01400 0.94616 0.97580 1.21568 1.02295 0.95823 0.94701 1.20204 1.01414 0.82100 0.98636 0.85809 1.26809 0.91627 0.89822 0.87170 1.77188 1.15633 0.94722 1.22675 1.47604 1.36694 1.07306 1.40346 0.69045 1.19464 0.79404 0.84833 0.80632 1.91238 1.71789 1.12139 1.61856 1.85279 1.53212 1.19211 1.57931 1.22051 0.95008 0.92132 0.97191 0.94039 0.92904 0.92380 0.96599 0.96011 0.93213 0.95432 0.90717 0.91282 0.90460 0.91280 0.90826 0.94616 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 8.40 37.16 0.31 -2.61 16 2 C 0.09 1.65 2.26 -67.71 -0.15 1.50 16 3 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 4 C 0.03 0.69 4.40 -27.88 -0.12 0.57 16 5 C -0.49 -13.13 8.80 -34.44 -0.30 -13.43 16 6 H 0.06 1.57 7.75 -52.49 -0.41 1.17 16 7 C 0.05 1.46 5.46 -17.81 -0.10 1.36 16 8 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.51 -8.40 4.26 -226.69 -0.97 -9.37 16 14 C 0.05 0.62 5.18 -3.83 -0.02 0.60 16 15 C -0.11 -1.21 6.09 -26.65 -0.16 -1.38 16 16 C -0.11 -1.11 4.96 -26.61 -0.13 -1.24 16 17 C 0.00 -0.04 2.82 -91.69 -0.26 -0.29 16 18 H 0.12 1.69 8.14 -51.93 -0.42 1.27 16 19 C 0.27 3.69 7.23 -13.38 -0.10 3.59 16 20 N -0.27 -3.34 11.95 32.46 0.39 -2.95 16 21 N -0.56 -6.39 7.44 27.62 0.21 -6.19 16 22 H 0.46 3.61 8.96 -182.46 -1.64 1.98 16 23 C 0.61 9.19 9.65 54.17 0.52 9.71 16 24 O -0.49 -8.74 18.05 -19.01 -0.34 -9.08 16 25 O -0.26 -4.14 10.71 -19.82 -0.21 -4.35 16 26 C 0.07 1.02 3.73 -3.84 -0.01 1.01 16 27 H 0.04 0.57 6.93 -51.93 -0.36 0.21 16 28 H 0.05 0.84 6.45 -51.94 -0.33 0.51 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.02 0.56 6.39 -51.93 -0.33 0.23 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.03 0.34 6.98 -51.93 -0.36 -0.02 16 34 H 0.07 0.96 7.98 -51.93 -0.41 0.55 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 39 H 0.04 0.53 6.57 -51.93 -0.34 0.19 16 40 H 0.10 1.81 6.28 -51.93 -0.33 1.49 16 LS Contribution 322.87 15.07 4.87 4.87 Total: -1.00 -31.30 322.87 -7.88 -39.18 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -7.01 Total: -2.03 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -0.53 Total: -0.61 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.36 Total: -44.58 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.56 Total: -13.43 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.30 -7.88 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298633451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.451 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds