Wall clock time and date at job start Tue Mar 31 2020 05:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47235 * 2 1 4 4 C 1.50705 * 109.47078 * 119.99504 * 2 1 3 5 5 N 1.30278 * 126.27817 * 300.02898 * 4 2 1 6 6 N 1.28674 * 109.37866 * 179.97438 * 5 4 2 7 7 C 1.30281 * 109.37927 * 0.02562 * 6 5 4 8 8 C 1.50697 * 126.28037 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.50756 * 164.96972 * 8 7 6 10 10 C 1.53097 * 109.50697 * 285.05500 * 8 7 6 11 11 N 1.47007 * 109.26176 * 176.78675 * 10 8 7 12 12 C 1.46901 * 111.00355 * 177.61167 * 11 10 8 13 13 C 1.50694 * 109.47349 * 64.46066 * 12 11 10 14 14 H 1.07999 * 119.99993 * 4.82359 * 13 12 11 15 15 C 1.37879 * 120.00439 * 184.81335 * 13 12 11 16 16 N 1.31518 * 119.99354 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00543 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47083 * 60.00051 * 17 15 13 19 19 H 1.48497 * 109.47647 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46994 * 300.00607 * 17 15 13 21 21 C 1.47014 * 110.75267 * 301.38374 * 11 10 8 22 22 C 1.53102 * 109.25602 * 58.61331 * 21 11 10 23 23 O 1.43014 * 109.50780 * 44.88382 * 8 7 6 24 24 O 1.34356 * 126.28447 * 119.71302 * 4 2 1 25 25 H 1.09002 * 109.46880 * 60.00719 * 1 2 3 26 26 H 1.08991 * 109.47449 * 300.00592 * 1 2 3 27 27 H 1.09001 * 109.47283 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47535 * 239.99232 * 2 1 3 29 29 H 1.08996 * 109.47103 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46600 * 299.99453 * 3 2 1 31 31 H 1.09000 * 109.47485 * 59.99202 * 3 2 1 32 32 H 1.09003 * 109.50475 * 296.72637 * 10 8 7 33 33 H 1.09003 * 109.50479 * 56.80696 * 10 8 7 34 34 H 1.08998 * 109.46936 * 184.46945 * 12 11 10 35 35 H 1.09000 * 109.46637 * 304.46644 * 12 11 10 36 36 H 0.97003 * 119.99541 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.51391 * 178.54875 * 21 11 10 38 38 H 1.09003 * 109.50740 * 298.64259 * 21 11 10 39 39 H 1.09005 * 109.50649 * 63.08968 * 22 21 11 40 40 H 1.08997 * 109.50708 * 183.17330 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7937 -0.3738 2.4663 6 7 2.3802 -1.2036 3.2557 7 6 3.0132 -2.0975 2.5503 8 6 3.8253 -3.2470 3.0888 9 1 4.0096 -3.9675 2.2918 10 6 5.1610 -2.7232 3.6232 11 7 5.9160 -3.8363 4.2166 12 6 7.2311 -3.3863 4.6918 13 6 7.0483 -2.3955 5.8124 14 1 6.0591 -2.1854 6.1914 15 6 8.1440 -1.7573 6.3540 16 7 9.3486 -2.0130 5.8922 17 14 7.9175 -0.5297 7.7435 18 1 7.2868 -1.2072 8.9047 19 1 9.2401 0.0132 8.1451 20 1 7.0453 0.5814 7.2851 21 6 5.1501 -4.4647 5.3029 22 6 3.8145 -4.9710 4.7516 23 8 3.1081 -3.8824 4.1505 24 8 2.8035 -1.8103 1.2546 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 0.5139 0.8898 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9565 0.8899 32 1 5.7354 -2.2892 2.8047 33 1 4.9764 -1.9625 4.3817 34 1 7.7995 -4.2433 5.0535 35 1 7.7708 -2.9122 3.8721 36 1 10.1194 -1.5637 6.2730 37 1 5.7165 -5.3020 5.7106 38 1 4.9659 -3.7325 6.0891 39 1 3.9984 -5.7422 4.0035 40 1 3.2196 -5.3872 5.5646 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330976385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:00 Heat of formation + Delta-G solvation = -5.228141 kcal Electronic energy + Delta-G solvation = -22454.717721 eV Core-core repulsion = 19078.709370 eV Total energy + Delta-G solvation = -3376.008351 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.16738 -39.25370 -36.23907 -36.01619 -35.43057 -32.47231 -32.27955 -29.37202 -28.18536 -27.54887 -25.60414 -24.44735 -24.20377 -22.78763 -21.68003 -20.97604 -19.72556 -17.38115 -17.28065 -16.56048 -16.26878 -15.98115 -15.47481 -14.85551 -14.59228 -14.54205 -14.43014 -13.70917 -13.51430 -13.04892 -12.85457 -12.56757 -12.26704 -12.25099 -11.89967 -11.76129 -11.65814 -11.57671 -11.36260 -11.22424 -11.07785 -10.87301 -10.74410 -10.52907 -10.38684 -9.92973 -9.80428 -9.64842 -9.14998 -8.48740 -7.42316 -6.09703 -4.18887 1.16186 2.04323 2.48188 3.28486 3.32563 3.37125 3.59406 4.12763 4.30808 4.37899 4.63553 4.64382 4.79464 4.82064 5.09781 5.12958 5.23239 5.28186 5.29643 5.39717 5.46919 5.50331 5.55947 5.62039 5.66737 5.67534 5.83051 5.87068 5.95086 5.97067 6.31413 6.52799 6.64430 7.04037 7.23354 7.41713 7.75402 7.85904 8.01367 8.17928 8.42010 8.89689 9.49015 10.96038 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.004535 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.242559 B = 6172.045366 C = 7028.536582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.006 3.994 3 C -0.147 4.147 4 C 0.158 3.842 5 N -0.283 5.283 6 N -0.258 5.258 7 C 0.177 3.823 8 C 0.193 3.807 9 H 0.093 0.907 10 C 0.040 3.960 11 N -0.536 5.536 12 C 0.188 3.812 13 C -0.556 4.556 14 H 0.059 0.941 15 C 0.068 3.932 16 N -0.890 5.890 17 Si 0.889 3.111 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.019 3.981 22 C 0.067 3.933 23 O -0.372 6.372 24 O -0.221 6.221 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.302 -0.070 -12.461 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.014 4.014 3 C -0.204 4.204 4 C -0.053 4.053 5 N -0.130 5.130 6 N -0.104 5.104 7 C -0.034 4.034 8 C 0.133 3.867 9 H 0.110 0.890 10 C -0.089 4.089 11 N -0.261 5.261 12 C 0.063 3.937 13 C -0.595 4.595 14 H 0.077 0.923 15 C -0.135 4.135 16 N -0.528 5.528 17 Si 0.717 3.283 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.110 4.110 22 C -0.009 4.009 23 O -0.291 6.291 24 O -0.100 6.100 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.650 0.302 -11.708 18.756 hybrid contribution 0.669 0.588 0.457 1.001 sum -13.980 0.890 -11.251 17.967 Atomic orbital electron populations 1.21869 0.91835 1.02956 1.03611 1.19722 0.96889 0.95390 0.89369 1.21884 1.01876 0.93084 1.03592 1.28058 0.92736 0.85996 0.98514 1.74385 1.19196 1.21119 0.98319 1.74485 1.08464 1.01282 1.26215 1.27433 0.99597 0.99601 0.76807 1.20102 0.88047 0.87722 0.90801 0.88980 1.22465 0.90956 0.94994 1.00517 1.62813 1.05196 1.27427 1.30678 1.19783 0.83718 0.95222 0.94939 1.21702 0.93473 1.24978 1.19361 0.92274 1.24938 0.95122 0.96602 0.96874 1.69932 0.98211 1.42699 1.41992 0.86689 0.77341 0.81696 0.82592 1.20078 1.21126 1.20124 1.22652 0.93536 1.00118 0.94664 1.22858 0.93356 0.87595 0.97128 1.87947 1.42827 1.48647 1.49639 1.84739 1.54884 1.39699 1.30725 0.90621 0.90974 0.92133 0.88135 0.91915 0.90631 0.90951 0.90168 0.91777 0.94731 0.94532 0.92649 0.89982 0.92533 0.92518 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.18 37.16 0.34 -0.75 16 2 C 0.01 0.06 3.39 -91.77 -0.31 -0.25 16 3 C -0.15 -1.19 9.18 37.16 0.34 -0.85 16 4 C 0.16 2.23 6.99 -12.94 -0.09 2.14 16 5 N -0.28 -4.88 12.22 32.55 0.40 -4.48 16 6 N -0.26 -5.01 12.22 32.55 0.40 -4.62 16 7 C 0.18 3.13 7.37 -12.94 -0.10 3.03 16 8 C 0.19 3.32 3.36 -27.83 -0.09 3.23 16 9 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 10 C 0.04 0.80 4.64 -3.72 -0.02 0.78 16 11 N -0.54 -11.14 4.94 -235.75 -1.16 -12.30 16 12 C 0.19 4.71 5.14 -4.98 -0.03 4.69 16 13 C -0.56 -15.16 7.65 -34.44 -0.26 -15.43 16 14 H 0.06 1.63 5.80 -52.49 -0.30 1.32 16 15 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 16 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 17 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.02 0.35 5.30 -3.71 -0.02 0.33 16 22 C 0.07 1.02 7.01 37.21 0.26 1.28 16 23 O -0.37 -6.58 10.45 -35.23 -0.37 -6.95 16 24 O -0.22 -3.44 10.87 5.40 0.06 -3.38 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.06 1.47 6.93 -51.93 -0.36 1.11 16 34 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.04 0.98 8.13 -51.93 -0.42 0.56 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 38 H 0.06 1.19 6.42 -51.93 -0.33 0.86 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -31.69 330.94 -6.10 -37.78 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -6.05 Total: -2.57 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.07 Total: 0.02 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.37 Total: -46.54 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.31 Total: -10.32 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.69 -6.10 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330976385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.556 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds