Wall clock time and date at job start Tue Mar 31 2020 05:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47235 * 2 1 4 4 C 1.50705 * 109.47078 * 119.99504 * 2 1 3 5 5 N 1.30278 * 126.27817 * 300.02898 * 4 2 1 6 6 N 1.28674 * 109.37866 * 179.97438 * 5 4 2 7 7 C 1.30281 * 109.37927 * 0.02562 * 6 5 4 8 8 C 1.50697 * 126.28037 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.50756 * 164.96972 * 8 7 6 10 10 C 1.53097 * 109.50697 * 285.05500 * 8 7 6 11 11 N 1.47007 * 109.26176 * 176.78675 * 10 8 7 12 12 C 1.46901 * 111.00355 * 177.61167 * 11 10 8 13 13 C 1.50694 * 109.47349 * 64.46066 * 12 11 10 14 14 H 1.07999 * 119.99993 * 4.82359 * 13 12 11 15 15 C 1.37879 * 120.00439 * 184.81335 * 13 12 11 16 16 N 1.31518 * 119.99354 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00543 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47083 * 60.00051 * 17 15 13 19 19 H 1.48497 * 109.47647 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46994 * 300.00607 * 17 15 13 21 21 C 1.47014 * 110.75267 * 301.38374 * 11 10 8 22 22 C 1.53102 * 109.25602 * 58.61331 * 21 11 10 23 23 O 1.43014 * 109.50780 * 44.88382 * 8 7 6 24 24 O 1.34356 * 126.28447 * 119.71302 * 4 2 1 25 25 H 1.09002 * 109.46880 * 60.00719 * 1 2 3 26 26 H 1.08991 * 109.47449 * 300.00592 * 1 2 3 27 27 H 1.09001 * 109.47283 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47535 * 239.99232 * 2 1 3 29 29 H 1.08996 * 109.47103 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46600 * 299.99453 * 3 2 1 31 31 H 1.09000 * 109.47485 * 59.99202 * 3 2 1 32 32 H 1.09003 * 109.50475 * 296.72637 * 10 8 7 33 33 H 1.09003 * 109.50479 * 56.80696 * 10 8 7 34 34 H 1.08998 * 109.46936 * 184.46945 * 12 11 10 35 35 H 1.09000 * 109.46637 * 304.46644 * 12 11 10 36 36 H 0.97003 * 119.99541 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.51391 * 178.54875 * 21 11 10 38 38 H 1.09003 * 109.50740 * 298.64259 * 21 11 10 39 39 H 1.09005 * 109.50649 * 63.08968 * 22 21 11 40 40 H 1.08997 * 109.50708 * 183.17330 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7937 -0.3738 2.4663 6 7 2.3802 -1.2036 3.2557 7 6 3.0132 -2.0975 2.5503 8 6 3.8253 -3.2470 3.0888 9 1 4.0096 -3.9675 2.2918 10 6 5.1610 -2.7232 3.6232 11 7 5.9160 -3.8363 4.2166 12 6 7.2311 -3.3863 4.6918 13 6 7.0483 -2.3955 5.8124 14 1 6.0591 -2.1854 6.1914 15 6 8.1440 -1.7573 6.3540 16 7 9.3486 -2.0130 5.8922 17 14 7.9175 -0.5297 7.7435 18 1 7.2868 -1.2072 8.9047 19 1 9.2401 0.0132 8.1451 20 1 7.0453 0.5814 7.2851 21 6 5.1501 -4.4647 5.3029 22 6 3.8145 -4.9710 4.7516 23 8 3.1081 -3.8824 4.1505 24 8 2.8035 -1.8103 1.2546 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 0.5139 0.8898 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9565 0.8899 32 1 5.7354 -2.2892 2.8047 33 1 4.9764 -1.9625 4.3817 34 1 7.7995 -4.2433 5.0535 35 1 7.7708 -2.9122 3.8721 36 1 10.1194 -1.5637 6.2730 37 1 5.7165 -5.3020 5.7106 38 1 4.9659 -3.7325 6.0891 39 1 3.9984 -5.7422 4.0035 40 1 3.2196 -5.3872 5.5646 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330976385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:59 Heat of formation + Delta-G solvation = -31.991850 kcal Electronic energy + Delta-G solvation = -22455.878283 eV Core-core repulsion = 19078.709370 eV Total energy + Delta-G solvation = -3377.168913 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.42573 -40.72436 -37.38150 -37.19475 -36.86773 -34.53299 -33.61629 -30.70207 -29.95582 -28.15614 -27.36529 -25.83846 -25.45833 -24.38344 -23.20252 -21.96333 -21.28653 -18.73250 -18.56473 -18.48012 -17.65114 -17.28980 -16.72352 -16.54520 -16.08621 -15.90431 -15.46028 -15.31794 -14.81970 -14.32031 -14.19654 -13.80604 -13.61957 -13.22185 -13.10209 -13.06765 -13.02690 -12.96229 -12.78135 -12.62626 -12.38553 -12.29864 -12.27537 -12.21907 -11.89848 -11.80050 -11.51899 -10.97734 -10.66450 -10.54160 -9.25645 -8.23728 -6.41111 -0.06661 0.84004 1.19687 1.32552 1.33756 1.41929 2.32356 2.47704 2.79143 3.03241 3.20692 3.30738 3.60748 3.72252 3.92736 3.96616 4.02400 4.09004 4.14756 4.21896 4.36909 4.46038 4.54204 4.55631 4.74731 4.78142 4.84092 4.86088 4.92852 5.00644 5.06574 5.14555 5.26612 5.26877 5.31036 5.66925 5.87840 5.90122 6.07902 6.24678 6.76283 7.14474 7.30162 8.79943 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.004535 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.242559 B = 6172.045366 C = 7028.536582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.004 3.996 3 C -0.145 4.145 4 C 0.177 3.823 5 N -0.317 5.317 6 N -0.294 5.294 7 C 0.168 3.832 8 C 0.205 3.795 9 H 0.123 0.877 10 C 0.046 3.954 11 N -0.528 5.528 12 C 0.201 3.799 13 C -0.564 4.564 14 H 0.051 0.949 15 C 0.020 3.980 16 N -0.920 5.920 17 Si 0.949 3.051 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.279 1.279 21 C 0.017 3.983 22 C 0.073 3.927 23 O -0.385 6.385 24 O -0.219 6.219 25 H 0.109 0.891 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.129 0.871 29 H 0.052 0.948 30 H 0.110 0.890 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.020 0.980 35 H 0.013 0.987 36 H 0.267 0.733 37 H 0.092 0.908 38 H 0.026 0.974 39 H 0.084 0.916 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.794 -0.311 -13.891 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.016 4.016 3 C -0.202 4.202 4 C -0.034 4.034 5 N -0.163 5.163 6 N -0.141 5.141 7 C -0.045 4.045 8 C 0.145 3.855 9 H 0.140 0.860 10 C -0.083 4.083 11 N -0.252 5.252 12 C 0.075 3.925 13 C -0.602 4.602 14 H 0.069 0.931 15 C -0.181 4.181 16 N -0.559 5.559 17 Si 0.774 3.226 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.205 1.205 21 C -0.112 4.112 22 C -0.003 4.003 23 O -0.304 6.304 24 O -0.098 6.098 25 H 0.128 0.872 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.147 0.853 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.044 0.956 39 H 0.103 0.897 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.166 0.060 -13.131 20.827 hybrid contribution 1.095 0.689 0.825 1.534 sum -15.071 0.749 -12.306 19.471 Atomic orbital electron populations 1.21889 0.90341 1.03122 1.04516 1.20224 0.97938 0.95519 0.87913 1.21912 1.01265 0.92502 1.04532 1.29254 0.90307 0.84615 0.99269 1.74316 1.20682 1.21747 0.99524 1.74409 1.09549 1.02269 1.27858 1.27408 0.99932 0.99612 0.77528 1.19988 0.86131 0.88059 0.91348 0.85992 1.22365 0.92684 0.93943 0.99347 1.62736 1.04110 1.27187 1.31142 1.19455 0.85751 0.93914 0.93418 1.21924 0.93099 1.25372 1.19849 0.93116 1.25686 0.94910 0.98326 0.99154 1.70024 0.98856 1.43797 1.43257 0.85747 0.77531 0.79343 0.79951 1.19289 1.20077 1.20468 1.22766 0.95518 0.99435 0.93443 1.23021 0.91356 0.87222 0.98652 1.87950 1.43175 1.49418 1.49900 1.84757 1.55150 1.40234 1.29642 0.87207 0.92562 0.92352 0.85282 0.92903 0.87105 0.92594 0.90388 0.95515 0.96217 0.96908 0.92393 0.89015 0.95572 0.89740 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.18 71.98 0.66 -1.09 16 2 C 0.00 0.06 3.39 -11.54 -0.04 0.02 16 3 C -0.14 -2.03 9.18 71.98 0.66 -1.37 16 4 C 0.18 4.81 6.99 88.34 0.62 5.43 16 5 N -0.32 -11.01 12.22 -165.50 -2.02 -13.03 16 6 N -0.29 -11.65 12.22 -165.50 -2.02 -13.68 16 7 C 0.17 5.90 7.37 88.34 0.65 6.55 16 8 C 0.20 6.87 3.36 29.88 0.10 6.97 16 9 H 0.12 3.38 8.14 -2.38 -0.02 3.36 16 10 C 0.05 1.88 4.64 86.32 0.40 2.28 16 11 N -0.53 -22.10 4.94 -899.79 -4.44 -26.54 16 12 C 0.20 10.36 5.14 85.55 0.44 10.80 16 13 C -0.56 -31.57 7.65 25.60 0.20 -31.38 16 14 H 0.05 2.89 5.80 -2.91 -0.02 2.87 16 15 C 0.02 1.11 5.46 84.65 0.46 1.57 16 16 N -0.92 -54.35 13.29 21.45 0.28 -54.06 16 17 Si 0.95 45.02 29.54 68.60 2.03 47.04 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 21 C 0.02 0.62 5.30 86.32 0.46 1.08 16 22 C 0.07 2.06 7.01 72.02 0.50 2.56 16 23 O -0.39 -13.14 10.45 -148.98 -1.56 -14.69 16 24 O -0.22 -6.55 10.87 -3.58 -0.04 -6.59 16 25 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.03 1.28 6.93 -2.39 -0.02 1.26 16 34 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.01 0.71 8.13 -2.39 -0.02 0.69 16 36 H 0.27 14.90 8.31 -92.71 -0.77 14.12 16 37 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.03 1.12 6.42 -2.39 -0.02 1.11 16 39 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -70.88 330.94 -1.63 -72.51 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 1.03 Total: 5.61 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 5.11 Total: 3.43 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -8.20 Total: -107.32 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -1.60 Total: -21.28 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -70.88 -1.63 -72.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330976385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.516 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds