Wall clock time and date at job start Tue Mar 31 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.38604 * 119.99634 * 269.99596 * 3 2 1 14 14 C 1.39283 * 120.49427 * 184.99985 * 13 3 2 15 15 C 1.38883 * 118.28534 * 180.02562 * 14 13 3 16 16 O 1.35549 * 120.46341 * 179.97438 * 15 14 13 17 17 C 1.42904 * 116.99817 * 180.02562 * 16 15 14 18 18 N 1.33034 * 119.06867 * 0.02562 * 15 14 13 19 19 C 1.31744 * 120.91702 * 0.02562 * 18 15 14 20 20 C 1.50699 * 119.05819 * 180.02562 * 19 18 15 21 21 O 1.42893 * 109.47235 * 89.99056 * 20 19 18 22 22 C 1.42913 * 113.99723 * 180.02562 * 21 20 19 23 23 N 1.31760 * 121.88559 * 359.70603 * 19 18 15 24 24 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 25 25 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 26 26 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 28 28 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 29 29 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 30 30 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 31 31 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 32 32 H 1.07995 * 120.86083 * 359.97438 * 14 13 3 33 33 H 1.08995 * 109.46880 * 179.97438 * 17 16 15 34 34 H 1.09004 * 109.46828 * 300.00048 * 17 16 15 35 35 H 1.08996 * 109.47102 * 59.99401 * 17 16 15 36 36 H 1.08993 * 109.47041 * 210.00234 * 20 19 18 37 37 H 1.09008 * 109.46549 * 329.99659 * 20 19 18 38 38 H 1.08998 * 109.46955 * 300.00232 * 22 21 20 39 39 H 1.08993 * 109.46611 * 60.00470 * 22 21 20 40 40 H 1.09004 * 109.46685 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 1 0.1156 2.7248 1.0961 7 6 0.9948 3.5050 2.8778 8 7 -0.1013 4.1246 3.2576 9 14 2.5358 3.6041 3.9290 10 1 3.3480 4.7738 3.5079 11 1 2.1528 3.7554 5.3557 12 1 3.3316 2.3619 3.7591 13 6 2.2493 2.0346 -1.2004 14 6 2.8108 3.3091 -1.2148 15 6 3.0218 3.9215 -2.4433 16 8 3.5651 5.1616 -2.5087 17 6 3.7489 5.7215 -3.8106 18 7 2.6823 3.2743 -3.5549 19 6 2.1523 2.0693 -3.5016 20 6 1.7839 1.3742 -4.7869 21 8 2.8986 0.6105 -5.2519 22 6 2.6536 -0.0917 -6.4722 23 7 1.9408 1.4521 -2.3569 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.0644 2.7986 1.1383 30 1 2.5506 1.3453 2.0283 31 1 -0.1095 4.6333 4.0835 32 1 3.0745 3.8087 -0.2944 33 1 4.1901 6.7141 -3.7203 34 1 4.4118 5.0803 -4.3916 35 1 2.7846 5.7972 -4.3130 36 1 0.9369 0.7111 -4.6115 37 1 1.5143 2.1173 -5.5374 38 1 1.8245 -0.7853 -6.3321 39 1 2.4022 0.6212 -7.2573 40 1 3.5472 -0.6470 -6.7575 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346391797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:29 Heat of formation + Delta-G solvation = -19.451622 kcal Electronic energy + Delta-G solvation = -22501.136134 eV Core-core repulsion = 19124.511006 eV Total energy + Delta-G solvation = -3376.625128 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.69376 -38.35609 -37.81923 -36.54410 -32.84856 -32.04391 -31.91970 -30.11192 -28.22448 -27.57719 -26.71860 -25.75623 -23.29448 -22.87804 -21.92867 -20.25600 -18.04016 -17.46380 -16.91469 -16.55660 -15.72637 -15.68551 -15.51231 -15.38463 -14.72282 -14.60226 -14.13874 -13.79405 -13.58501 -12.98248 -12.77998 -12.68616 -12.46654 -12.37459 -11.85013 -11.74874 -11.54932 -11.34683 -11.24824 -11.07965 -10.69962 -10.47917 -10.34636 -10.01032 -9.89717 -9.76063 -9.48030 -8.86949 -8.72211 -8.66999 -7.14581 -6.19210 -4.20310 1.49740 1.96756 3.16218 3.20769 3.27030 3.29341 3.61426 3.71468 4.28484 4.31881 4.63908 4.75790 5.11135 5.16767 5.23563 5.34965 5.38552 5.45624 5.49842 5.52323 5.54572 5.68205 5.72168 5.87715 5.93853 6.05169 6.08674 6.21962 6.40681 6.55002 6.64773 6.66989 6.96934 7.04603 7.20521 7.43643 7.56606 7.92352 8.02251 8.38622 8.74345 8.87766 9.39325 10.93429 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.005514 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.932854 B = 5076.495817 C = 6244.698207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.130 3.870 3 N -0.565 5.565 4 C 0.218 3.782 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.891 5.891 9 Si 0.870 3.130 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.471 3.529 14 C -0.295 4.295 15 C 0.375 3.625 16 O -0.303 6.303 17 C 0.042 3.958 18 N -0.610 5.610 19 C 0.383 3.617 20 C 0.140 3.860 21 O -0.382 6.382 22 C 0.034 3.966 23 N -0.581 5.581 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.266 0.734 32 H 0.153 0.847 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.528 -5.060 -14.770 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.006 3.994 3 N -0.272 5.272 4 C 0.097 3.903 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.127 4.127 8 N -0.529 5.529 9 Si 0.697 3.303 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.189 1.189 13 C 0.229 3.771 14 C -0.324 4.324 15 C 0.194 3.806 16 O -0.208 6.208 17 C -0.053 4.053 18 N -0.347 5.347 19 C 0.111 3.889 20 C 0.062 3.938 21 O -0.299 6.299 22 C -0.062 4.062 23 N -0.312 5.312 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.170 0.830 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.487 -5.267 -14.851 16.685 hybrid contribution 0.558 0.743 1.095 1.436 sum 6.045 -4.524 -13.756 15.692 Atomic orbital electron populations 1.22135 0.96081 1.00651 1.03367 1.21292 0.94770 0.81740 1.01558 1.46812 1.64825 1.12909 1.02678 1.19894 0.97789 0.92961 0.79650 1.21382 0.97531 1.31018 1.07597 0.90177 1.24858 0.95994 0.94692 0.97164 1.69887 1.27151 1.32356 1.23460 0.86944 0.83791 0.79316 0.80290 1.19758 1.20867 1.18931 1.18083 0.85754 0.87123 0.86185 1.21121 1.15078 0.98004 0.98235 1.19507 0.87490 0.84415 0.89206 1.86239 1.75994 1.26863 1.31716 1.22810 1.01865 0.97812 0.82831 1.67668 1.23451 1.12616 1.31006 1.21665 0.89192 0.85978 0.92024 1.20876 0.89008 0.93763 0.90165 1.87938 1.36846 1.64568 1.40591 1.22740 1.01949 0.95655 0.85891 1.67691 1.27954 1.38276 0.97233 0.90935 0.92833 0.93098 0.90794 0.91318 0.95051 0.94397 0.92386 0.82976 0.88959 0.92426 0.92408 0.90656 0.90956 0.93848 0.93984 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.24 37.16 0.38 -2.52 16 2 C 0.13 2.31 6.17 -4.04 -0.02 2.28 16 3 N -0.56 -11.80 2.56 -175.09 -0.45 -12.25 16 4 C 0.22 4.96 4.14 -5.19 -0.02 4.94 16 5 C -0.54 -14.39 9.48 -34.44 -0.33 -14.72 16 6 H 0.08 2.40 7.66 -52.49 -0.40 2.00 16 7 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 9 Si 0.87 20.21 27.47 -169.99 -4.67 15.54 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 13 C 0.47 9.93 7.38 -154.74 -1.14 8.78 16 14 C -0.30 -6.24 9.28 -38.95 -0.36 -6.60 16 15 C 0.37 7.34 7.52 -16.79 -0.13 7.21 16 16 O -0.30 -5.34 10.49 -18.34 -0.19 -5.54 16 17 C 0.04 0.55 10.41 101.05 1.05 1.60 16 18 N -0.61 -11.33 9.27 -10.86 -0.10 -11.43 16 19 C 0.38 6.95 7.27 -157.27 -1.14 5.81 16 20 C 0.14 1.96 6.37 36.01 0.23 2.19 16 21 O -0.38 -5.40 10.69 -35.23 -0.38 -5.77 16 22 C 0.03 0.32 11.01 101.05 1.11 1.43 16 23 N -0.58 -11.43 9.21 -10.02 -0.09 -11.52 16 24 H 0.07 1.48 7.26 -51.93 -0.38 1.10 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.25 7.48 -51.93 -0.39 0.86 16 28 H 0.07 1.12 7.89 -51.93 -0.41 0.71 16 29 H 0.03 0.71 5.47 -51.93 -0.28 0.43 16 30 H 0.04 0.84 6.95 -51.93 -0.36 0.48 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.15 3.30 6.15 -52.49 -0.32 2.98 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -31.45 337.67 -6.42 -37.88 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.94 Total: 1.12 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -0.47 Total: 12.40 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.13 Total: -60.72 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.57 Total: -11.31 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.45 -6.42 -37.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346391797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.424 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds