Wall clock time and date at job start Tue Mar 31 2020 05:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46855 * 2 1 4 4 C 1.53003 * 109.47144 * 239.99864 * 2 1 3 5 5 C 1.50704 * 109.46912 * 60.00120 * 4 2 1 6 6 H 1.07994 * 120.00100 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99654 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00404 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99811 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46778 * 60.00078 * 9 7 5 11 11 H 1.48500 * 109.47108 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47314 * 300.00326 * 9 7 5 13 13 C 1.53000 * 109.47300 * 119.99872 * 2 1 3 14 14 N 1.46899 * 109.46948 * 300.00480 * 13 2 1 15 15 C 1.46904 * 110.99871 * 179.97438 * 14 13 2 16 16 C 1.50701 * 109.47142 * 179.97438 * 15 14 13 17 17 C 1.35315 * 126.66263 * 90.26026 * 16 15 14 18 18 C 1.42275 * 103.92312 * 180.11024 * 17 16 15 19 19 C 1.48324 * 126.94207 * 179.91102 * 18 17 16 20 20 N 1.34773 * 120.00209 * 179.97438 * 19 18 17 21 21 O 1.21503 * 119.99783 * 359.70800 * 19 18 17 22 22 N 1.30988 * 106.11941 * 359.64842 * 18 17 16 23 23 O 1.20907 * 111.43783 * 0.22329 * 22 18 17 24 24 H 1.08994 * 109.47488 * 299.99704 * 1 2 3 25 25 H 1.08992 * 109.47297 * 60.00371 * 1 2 3 26 26 H 1.09009 * 109.46790 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47227 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47395 * 299.99757 * 3 2 1 29 29 H 1.09003 * 109.47301 * 60.00155 * 3 2 1 30 30 H 1.09002 * 109.46686 * 179.97438 * 4 2 1 31 31 H 1.08997 * 109.47247 * 299.99627 * 4 2 1 32 32 H 0.96994 * 119.99736 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47049 * 179.97438 * 13 2 1 34 34 H 1.09005 * 109.47134 * 59.99975 * 13 2 1 35 35 H 1.00890 * 111.00332 * 56.04751 * 14 13 2 36 36 H 1.09002 * 109.46891 * 59.99705 * 15 14 13 37 37 H 1.09000 * 109.47305 * 299.99672 * 15 14 13 38 38 H 1.08006 * 128.04493 * 0.02562 * 17 16 15 39 39 H 0.97004 * 120.00018 * 179.72055 * 20 19 18 40 40 H 0.97000 * 120.00112 * 359.72885 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6281 -1.5504 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 1.7420 1.7990 -5.2570 11 1 1.7431 -0.3014 -6.4697 12 1 -0.2370 0.3975 -5.2573 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0287 2.4486 15 6 2.0208 -0.6952 3.6703 16 6 1.5002 0.0421 4.8771 17 6 0.3367 -0.1919 5.5271 18 6 0.3302 0.7706 6.5748 19 6 -0.7236 0.9648 7.6003 20 7 -0.5853 1.9258 8.5351 21 8 -1.7139 0.2608 7.5948 22 7 1.4455 1.4469 6.4542 23 8 2.1020 1.0533 5.5183 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7208 -1.2494 31 1 1.6767 -1.7489 -1.2492 32 1 2.8624 -1.8817 -4.7336 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2493 35 1 0.5438 0.0413 2.4402 36 1 3.1107 -0.6953 3.6873 37 1 1.6571 -1.7226 3.6869 38 1 -0.4136 -0.9356 5.3020 39 1 -1.2764 2.0554 9.2034 40 1 0.2053 2.4878 8.5397 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350392096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:58 Heat of formation + Delta-G solvation = 8.314482 kcal Electronic energy + Delta-G solvation = -21456.515563 eV Core-core repulsion = 18081.094463 eV Total energy + Delta-G solvation = -3375.421099 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.31680 -39.69853 -37.88027 -35.19254 -34.51437 -33.73015 -32.51517 -31.44368 -27.34094 -26.52836 -26.35143 -25.31390 -24.43482 -22.93719 -22.17642 -20.47250 -18.59043 -18.00658 -17.82537 -17.09630 -16.93011 -16.24495 -15.50452 -15.07325 -14.87116 -14.81687 -14.31198 -14.22642 -13.95468 -13.45330 -12.88328 -12.67449 -12.25508 -12.00406 -11.87710 -11.69488 -11.00543 -10.90833 -10.85589 -10.80882 -10.77953 -10.52022 -10.33423 -10.23565 -10.17969 -9.86082 -9.72353 -9.06185 -8.88621 -8.34445 -8.32792 -5.97811 -3.98033 0.78543 1.37005 2.62594 2.78563 2.85732 3.34146 3.38931 3.41179 3.69163 4.17936 4.43020 4.50582 4.70950 4.85254 4.96351 5.25000 5.38060 5.39101 5.59221 5.62720 5.68078 5.92073 6.14669 6.22284 6.24890 6.43939 6.61640 6.71882 6.73365 6.79902 7.02331 7.16643 7.21471 7.27810 7.44114 7.61916 7.67098 7.77846 7.81700 8.02039 8.45997 9.06975 9.64957 11.13770 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038473 B = 0.002767 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.606166 B =10117.828133 C =10300.494141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.058 4.058 3 C -0.117 4.117 4 C 0.034 3.966 5 C -0.508 4.508 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.070 3.930 14 N -0.683 5.683 15 C 0.132 3.868 16 C -0.006 4.006 17 C -0.184 4.184 18 C -0.034 4.034 19 C 0.608 3.392 20 N -0.839 5.839 21 O -0.524 6.524 22 N -0.334 5.334 23 O 0.134 5.866 24 H 0.033 0.967 25 H 0.065 0.935 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.016 0.984 31 H 0.013 0.987 32 H 0.260 0.740 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.344 0.656 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.181 0.819 39 H 0.410 0.590 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.405 3.902 21.750 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.058 4.058 3 C -0.175 4.175 4 C -0.004 4.004 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.058 4.058 14 N -0.316 5.316 15 C 0.002 3.998 16 C -0.069 4.069 17 C -0.207 4.207 18 C -0.193 4.193 19 C 0.391 3.609 20 N -0.403 5.403 21 O -0.398 6.398 22 N -0.034 5.034 23 O 0.057 5.943 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.164 0.836 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.198 0.802 39 H 0.242 0.758 40 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.899 4.718 22.205 22.780 hybrid contribution -1.229 -0.625 -0.915 1.654 sum -3.128 4.093 21.290 21.905 Atomic orbital electron populations 1.21788 0.96003 1.00482 1.00530 1.20642 0.94788 0.96210 0.94199 1.21615 0.99891 0.95703 1.00259 1.19126 0.96186 0.94985 0.90057 1.21187 1.30897 1.11967 0.90596 0.92341 1.25008 0.95377 0.95110 0.99050 1.69950 1.37155 1.23188 1.23440 0.86725 0.79151 0.79839 0.82684 1.20301 1.21444 1.20367 1.22185 1.00198 0.94873 0.88557 1.60614 1.17059 1.53607 1.00354 1.20453 1.02012 0.93408 0.83969 1.24512 0.93483 0.91188 0.97736 1.22465 0.99461 1.02905 0.95893 1.23320 0.96016 0.98898 1.01038 1.16864 0.84051 0.80192 0.79814 1.43628 1.26780 1.36966 1.32961 1.90864 1.29517 1.46047 1.73345 1.74144 1.05257 1.19294 1.04703 1.84789 1.40278 1.38873 1.30315 0.94849 0.91594 0.93959 0.94016 0.92616 0.93916 0.96561 0.96829 0.93084 0.90933 0.95201 0.83615 0.88178 0.91308 0.80201 0.75817 0.76195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 7.89 37.16 0.29 -2.01 16 2 C -0.06 -1.08 0.60 -154.51 -0.09 -1.18 16 3 C -0.12 -2.17 8.06 37.16 0.30 -1.87 16 4 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -13.55 7.65 -34.44 -0.26 -13.82 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.07 1.06 4.65 -3.82 -0.02 1.04 16 14 N -0.68 -8.58 5.70 -115.05 -0.66 -9.23 16 15 C 0.13 1.28 6.24 -4.97 -0.03 1.25 16 16 C -0.01 -0.06 6.99 -35.35 -0.25 -0.30 16 17 C -0.18 -1.93 10.92 -39.07 -0.43 -2.35 16 18 C -0.03 -0.38 7.19 -82.53 -0.59 -0.97 16 19 C 0.61 6.62 8.12 -12.11 -0.10 6.52 16 20 N -0.84 -5.68 8.87 30.64 0.27 -5.41 16 21 O -0.52 -7.34 17.79 5.36 0.10 -7.24 16 22 N -0.33 -3.75 11.84 33.29 0.39 -3.36 16 23 O 0.13 1.52 11.18 17.26 0.19 1.71 16 24 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 25 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 26 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.12 6.62 -51.93 -0.34 0.77 16 29 H 0.04 0.71 7.60 -51.93 -0.39 0.32 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.34 4.25 6.76 -39.30 -0.27 3.98 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.18 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.41 1.94 8.93 -40.82 -0.36 1.57 16 40 H 0.41 2.15 8.59 -40.82 -0.35 1.80 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -31.39 336.21 -5.95 -37.34 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.64 Total: 1.99 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -1.39 Total: -11.54 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.75 Total: -43.63 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: 0.29 Total: -5.53 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.39 -5.95 -37.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350392096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.658 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds