Wall clock time and date at job start Tue Mar 31 2020 05:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46947 * 2 1 4 4 N 1.46505 * 109.47042 * 179.97438 * 3 2 1 5 5 C 1.36777 * 119.99862 * 263.95619 * 4 3 2 6 6 H 1.08006 * 119.99763 * 143.02955 * 5 4 3 7 7 C 1.39124 * 120.00353 * 323.03053 * 5 4 3 8 8 N 1.31315 * 119.99450 * 339.39581 * 7 5 4 9 9 Si 1.86799 * 119.99996 * 159.39698 * 7 5 4 10 10 H 1.48507 * 109.47077 * 90.00038 * 9 7 5 11 11 H 1.48500 * 109.46646 * 209.99977 * 9 7 5 12 12 H 1.48494 * 109.47099 * 330.00164 * 9 7 5 13 13 C 1.34769 * 119.99795 * 83.95956 * 4 3 2 14 14 O 1.21549 * 119.99938 * 184.34206 * 13 4 3 15 15 C 1.48174 * 120.00252 * 4.33450 * 13 4 3 16 16 C 1.42329 * 126.94604 * 176.39682 * 15 13 4 17 17 C 1.35281 * 103.92049 * 179.85746 * 16 15 13 18 18 C 1.50700 * 126.65114 * 180.10711 * 17 16 15 19 19 N 1.46907 * 109.47245 * 90.33304 * 18 17 16 20 20 C 1.46899 * 111.00142 * 169.99965 * 19 18 17 21 21 C 1.46902 * 110.99736 * 293.95034 * 19 18 17 22 22 O 1.34030 * 106.69483 * 0.40523 * 17 16 15 23 23 N 1.20908 * 111.85750 * 359.72398 * 22 17 16 24 24 H 1.09001 * 109.47284 * 60.00285 * 1 2 3 25 25 H 1.09001 * 109.46909 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47604 * 299.99813 * 1 2 3 27 27 H 1.08994 * 109.47158 * 240.00108 * 2 1 3 28 28 H 1.09000 * 109.46764 * 119.99659 * 2 1 3 29 29 H 1.09006 * 109.47200 * 59.99659 * 3 2 1 30 30 H 1.09000 * 109.47110 * 299.99447 * 3 2 1 31 31 H 0.96999 * 119.99787 * 180.02562 * 8 7 5 32 32 H 1.08007 * 128.04079 * 0.02562 * 16 15 13 33 33 H 1.09000 * 109.47011 * 210.32787 * 18 17 16 34 34 H 1.08999 * 109.47394 * 330.33010 * 18 17 16 35 35 H 1.09000 * 109.47065 * 59.99693 * 20 19 18 36 36 H 1.08992 * 109.46971 * 180.02562 * 20 19 18 37 37 H 1.09006 * 109.46871 * 300.00096 * 20 19 18 38 38 H 1.09002 * 109.47051 * 59.99853 * 21 19 18 39 39 H 1.08994 * 109.47014 * 179.97438 * 21 19 18 40 40 H 1.08997 * 109.47292 * 300.00090 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1884 1.5674 1.1788 6 1 5.1055 1.0180 1.3320 7 6 3.7021 2.4022 2.1800 8 7 2.8522 3.3580 1.8825 9 14 4.2583 2.1634 3.9472 10 1 5.4722 2.9811 4.1989 11 1 3.1747 2.5893 4.8689 12 1 4.5703 0.7302 4.1785 13 6 4.1793 1.3196 -1.1598 14 8 5.3922 1.2402 -1.1524 15 6 3.4422 1.2810 -2.4445 16 6 4.0032 1.2273 -3.7515 17 6 2.9248 1.2062 -4.5680 18 6 2.9376 1.1476 -6.0738 19 7 2.9202 -0.2553 -6.5095 20 6 2.6936 -0.3540 -7.9575 21 6 4.1597 -0.9421 -6.1225 22 8 1.8430 1.2542 -3.7783 23 7 2.1418 1.2952 -2.6075 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.5134 3.9403 2.5804 32 1 5.0473 1.2054 -4.0272 33 1 2.0589 1.6604 -6.4648 34 1 3.8386 1.6333 -6.4487 35 1 3.4921 0.1663 -8.4865 36 1 2.6849 -1.4031 -8.2531 37 1 1.7353 0.1015 -8.2073 38 1 4.2673 -0.9142 -5.0382 39 1 4.1202 -1.9788 -6.4568 40 1 5.0112 -0.4431 -6.5851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355619413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:52 Heat of formation + Delta-G solvation = 46.904949 kcal Electronic energy + Delta-G solvation = -22755.773049 eV Core-core repulsion = 19382.025358 eV Total energy + Delta-G solvation = -3373.747691 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.45384 -38.46975 -37.70967 -35.29148 -33.40859 -32.69931 -31.97201 -31.12896 -27.78919 -27.34138 -26.07001 -25.11951 -23.20476 -22.56104 -21.64724 -20.79667 -18.90103 -17.29029 -17.02508 -16.69013 -16.08595 -15.46619 -15.40928 -14.98575 -14.60968 -14.21204 -13.79312 -13.66092 -13.43879 -13.10992 -12.89458 -12.59569 -12.33742 -12.05290 -11.87957 -11.77431 -11.64805 -11.50717 -11.37250 -11.03567 -10.69571 -10.60933 -10.35523 -10.23276 -9.78808 -9.69286 -9.19031 -8.88375 -8.72385 -8.58203 -7.52774 -6.41939 -4.03045 1.72199 2.26657 3.16455 3.22549 3.28430 3.33255 3.85077 4.03402 4.29937 4.51748 4.68895 4.90651 4.96462 4.99725 5.07068 5.17987 5.33958 5.41925 5.42813 5.56939 5.61463 5.76037 5.84208 5.85298 5.87704 5.92649 6.16517 6.33541 6.50112 6.55060 6.65357 6.67939 6.74769 6.79107 7.07239 7.37372 7.51765 8.17309 8.41030 8.69900 9.07579 9.29825 9.91510 10.61265 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.004535 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.107937 B = 6172.456478 C = 6671.983464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.095 3.905 4 N -0.409 5.409 5 C -0.312 4.312 6 H 0.096 0.904 7 C 0.041 3.959 8 N -0.857 5.857 9 Si 0.922 3.078 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.514 3.486 14 O -0.575 6.575 15 C 0.005 3.995 16 C -0.182 4.182 17 C -0.044 4.044 18 C 0.138 3.862 19 N -0.545 5.545 20 C 0.026 3.974 21 C 0.016 3.984 22 O 0.106 5.894 23 N -0.330 5.330 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.271 0.729 32 H 0.169 0.831 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.969 -4.851 -14.630 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C -0.029 4.029 4 N -0.126 5.126 5 C -0.440 4.440 6 H 0.114 0.886 7 C -0.165 4.165 8 N -0.494 5.494 9 Si 0.748 3.252 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.191 1.191 13 C 0.301 3.699 14 O -0.459 6.459 15 C -0.154 4.154 16 C -0.205 4.205 17 C -0.108 4.108 18 C 0.010 3.990 19 N -0.269 5.269 20 C -0.122 4.122 21 C -0.132 4.132 22 O 0.037 5.963 23 N -0.036 5.036 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.187 0.813 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.893 -4.913 -13.404 15.092 hybrid contribution 1.587 0.376 0.101 1.635 sum -3.305 -4.537 -13.304 14.440 Atomic orbital electron populations 1.21616 0.96167 1.00442 1.01561 1.21802 0.95159 0.98823 1.00966 1.21965 0.80917 0.95212 1.04808 1.43403 1.05441 1.59295 1.04449 1.19505 1.09363 1.25357 0.89808 0.88637 1.25473 0.96806 0.93397 1.00859 1.69914 1.30919 1.14513 1.34049 0.86010 0.78444 0.79231 0.81524 1.20055 1.20603 1.19127 1.17157 0.86360 0.85088 0.81284 1.90605 1.12823 1.56546 1.85903 1.24096 0.89443 1.04144 0.97679 1.22362 1.00716 1.06829 0.90641 1.23937 0.86277 1.05463 0.95142 1.20404 1.03182 0.89975 0.85456 1.61906 1.36911 1.13106 1.14995 1.22389 1.01020 1.02406 0.86374 1.22525 0.89179 0.98843 1.02621 1.84798 1.33196 1.66335 1.11961 1.74469 1.16233 1.17706 0.95183 0.92736 0.93685 0.93048 0.93413 0.92418 0.87664 0.90532 0.91865 0.81331 0.88367 0.91357 0.95402 0.91011 0.91005 0.90541 0.91133 0.95202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.91 37.16 0.37 -2.02 16 2 C -0.13 -2.67 5.83 -26.73 -0.16 -2.83 16 3 C 0.09 2.27 4.51 -4.04 -0.02 2.25 16 4 N -0.41 -11.07 2.53 -115.77 -0.29 -11.36 16 5 C -0.31 -8.86 8.94 -15.02 -0.13 -8.99 16 6 H 0.10 2.79 7.71 -52.48 -0.40 2.39 16 7 C 0.04 1.09 4.92 -17.44 -0.09 1.00 16 8 N -0.86 -23.40 11.46 55.50 0.64 -22.76 16 9 Si 0.92 20.56 29.60 -169.99 -5.03 15.53 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.51 13.72 7.60 -12.18 -0.09 13.63 16 14 O -0.58 -16.77 16.80 5.32 0.09 -16.68 16 15 C 0.01 0.12 6.71 -82.54 -0.55 -0.44 16 16 C -0.18 -3.23 9.60 -39.06 -0.38 -3.61 16 17 C -0.04 -0.66 6.33 -35.36 -0.22 -0.89 16 18 C 0.14 1.46 5.52 -4.97 -0.03 1.43 16 19 N -0.54 -5.73 5.01 -252.72 -1.27 -7.00 16 20 C 0.03 0.19 9.57 60.06 0.57 0.77 16 21 C 0.02 0.17 9.29 60.07 0.56 0.73 16 22 O 0.11 1.85 11.18 17.21 0.19 2.04 16 23 N -0.33 -6.73 7.68 33.29 0.26 -6.47 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 1.01 7.27 -51.93 -0.38 0.63 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.11 2.70 5.53 -51.93 -0.29 2.41 16 30 H 0.08 1.82 5.25 -51.93 -0.27 1.55 16 31 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.17 2.73 8.06 -52.48 -0.42 2.31 16 33 H 0.10 0.86 8.06 -51.93 -0.42 0.44 16 34 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 35 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 38 H 0.08 0.97 6.35 -51.93 -0.33 0.64 16 39 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 40 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 332.18 15.07 5.01 5.01 Total: -1.00 -32.05 332.18 -6.45 -38.50 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.87 Total: 2.15 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.17 Total: 1.05 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.67 Total: -47.60 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.28 Total: -14.64 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.05 -6.45 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355619413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.401 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds