Wall clock time and date at job start Tue Mar 31 2020 05:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46947 * 2 1 4 4 N 1.46505 * 109.47042 * 179.97438 * 3 2 1 5 5 C 1.36777 * 119.99862 * 263.95619 * 4 3 2 6 6 H 1.08006 * 119.99763 * 143.02955 * 5 4 3 7 7 C 1.39124 * 120.00353 * 323.03053 * 5 4 3 8 8 N 1.31315 * 119.99450 * 339.39581 * 7 5 4 9 9 Si 1.86799 * 119.99996 * 159.39698 * 7 5 4 10 10 H 1.48507 * 109.47077 * 90.00038 * 9 7 5 11 11 H 1.48500 * 109.46646 * 209.99977 * 9 7 5 12 12 H 1.48494 * 109.47099 * 330.00164 * 9 7 5 13 13 C 1.34769 * 119.99795 * 83.95956 * 4 3 2 14 14 O 1.21549 * 119.99938 * 184.34206 * 13 4 3 15 15 C 1.48174 * 120.00252 * 4.33450 * 13 4 3 16 16 C 1.42329 * 126.94604 * 176.39682 * 15 13 4 17 17 C 1.35281 * 103.92049 * 179.85746 * 16 15 13 18 18 C 1.50700 * 126.65114 * 180.10711 * 17 16 15 19 19 N 1.46907 * 109.47245 * 90.33304 * 18 17 16 20 20 C 1.46899 * 111.00142 * 169.99965 * 19 18 17 21 21 C 1.46902 * 110.99736 * 293.95034 * 19 18 17 22 22 O 1.34030 * 106.69483 * 0.40523 * 17 16 15 23 23 N 1.20908 * 111.85750 * 359.72398 * 22 17 16 24 24 H 1.09001 * 109.47284 * 60.00285 * 1 2 3 25 25 H 1.09001 * 109.46909 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47604 * 299.99813 * 1 2 3 27 27 H 1.08994 * 109.47158 * 240.00108 * 2 1 3 28 28 H 1.09000 * 109.46764 * 119.99659 * 2 1 3 29 29 H 1.09006 * 109.47200 * 59.99659 * 3 2 1 30 30 H 1.09000 * 109.47110 * 299.99447 * 3 2 1 31 31 H 0.96999 * 119.99787 * 180.02562 * 8 7 5 32 32 H 1.08007 * 128.04079 * 0.02562 * 16 15 13 33 33 H 1.09000 * 109.47011 * 210.32787 * 18 17 16 34 34 H 1.08999 * 109.47394 * 330.33010 * 18 17 16 35 35 H 1.09000 * 109.47065 * 59.99693 * 20 19 18 36 36 H 1.08992 * 109.46971 * 180.02562 * 20 19 18 37 37 H 1.09006 * 109.46871 * 300.00096 * 20 19 18 38 38 H 1.09002 * 109.47051 * 59.99853 * 21 19 18 39 39 H 1.08994 * 109.47014 * 179.97438 * 21 19 18 40 40 H 1.08997 * 109.47292 * 300.00090 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1884 1.5674 1.1788 6 1 5.1055 1.0180 1.3320 7 6 3.7021 2.4022 2.1800 8 7 2.8522 3.3580 1.8825 9 14 4.2583 2.1634 3.9472 10 1 5.4722 2.9811 4.1989 11 1 3.1747 2.5893 4.8689 12 1 4.5703 0.7302 4.1785 13 6 4.1793 1.3196 -1.1598 14 8 5.3922 1.2402 -1.1524 15 6 3.4422 1.2810 -2.4445 16 6 4.0032 1.2273 -3.7515 17 6 2.9248 1.2062 -4.5680 18 6 2.9376 1.1476 -6.0738 19 7 2.9202 -0.2553 -6.5095 20 6 2.6936 -0.3540 -7.9575 21 6 4.1597 -0.9421 -6.1225 22 8 1.8430 1.2542 -3.7783 23 7 2.1418 1.2952 -2.6075 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.5134 3.9403 2.5804 32 1 5.0473 1.2054 -4.0272 33 1 2.0589 1.6604 -6.4648 34 1 3.8386 1.6333 -6.4487 35 1 3.4921 0.1663 -8.4865 36 1 2.6849 -1.4031 -8.2531 37 1 1.7353 0.1015 -8.2073 38 1 4.2673 -0.9142 -5.0382 39 1 4.1202 -1.9788 -6.4568 40 1 5.0112 -0.4431 -6.5851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355619413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:52 Heat of formation + Delta-G solvation = 25.340400 kcal Electronic energy + Delta-G solvation = -22756.708158 eV Core-core repulsion = 19382.025358 eV Total energy + Delta-G solvation = -3374.682800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.00262 -40.48272 -38.51804 -37.29837 -35.09365 -34.42306 -33.37611 -33.00319 -28.59614 -28.25508 -28.00224 -26.90696 -24.94920 -23.68587 -22.95602 -22.49243 -20.58585 -18.95751 -18.77140 -18.31981 -17.78223 -16.98344 -16.23748 -16.22610 -16.08692 -15.80540 -15.63459 -15.45420 -14.87258 -14.60797 -14.13959 -13.98652 -13.51563 -13.38704 -13.29105 -13.14415 -12.85107 -12.74092 -12.59163 -12.50837 -12.41200 -12.22153 -12.10636 -11.98776 -11.59744 -11.32401 -10.93748 -10.82765 -10.47197 -9.60038 -9.34973 -8.47362 -6.19672 0.26229 0.72288 1.37537 1.39198 1.52668 2.05619 2.20042 2.32987 2.71152 2.93850 3.07994 3.20329 3.63612 4.00017 4.08087 4.14761 4.22832 4.28137 4.33162 4.47330 4.54786 4.55761 4.63314 4.77466 4.79406 4.81533 4.91366 4.95654 5.05707 5.07138 5.12998 5.22522 5.31450 5.36052 5.53041 5.92280 6.05220 6.07014 6.36069 6.96299 7.18576 7.27190 7.84916 8.56140 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.004535 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.107937 B = 6172.456478 C = 6671.983464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.120 4.120 3 C 0.101 3.899 4 N -0.423 5.423 5 C -0.354 4.354 6 H 0.072 0.928 7 C 0.009 3.991 8 N -0.880 5.880 9 Si 0.992 3.008 10 H -0.272 1.272 11 H -0.262 1.262 12 H -0.265 1.265 13 C 0.500 3.500 14 O -0.617 6.617 15 C -0.032 4.032 16 C -0.191 4.191 17 C -0.012 4.012 18 C 0.139 3.861 19 N -0.562 5.562 20 C 0.027 3.973 21 C 0.017 3.983 22 O 0.125 5.875 23 N -0.339 5.339 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.280 0.720 32 H 0.179 0.821 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 -5.066 -16.267 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.158 4.158 3 C -0.022 4.022 4 N -0.139 5.139 5 C -0.482 4.482 6 H 0.090 0.910 7 C -0.196 4.196 8 N -0.516 5.516 9 Si 0.813 3.187 10 H -0.197 1.197 11 H -0.187 1.187 12 H -0.189 1.189 13 C 0.289 3.711 14 O -0.503 6.503 15 C -0.189 4.189 16 C -0.215 4.215 17 C -0.076 4.076 18 C 0.011 3.989 19 N -0.287 5.287 20 C -0.120 4.120 21 C -0.131 4.131 22 O 0.050 5.950 23 N -0.041 5.041 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.197 0.803 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.378 -5.125 -15.021 17.105 hybrid contribution 2.005 0.443 0.424 2.097 sum -4.373 -4.681 -14.597 15.941 Atomic orbital electron populations 1.21557 0.92890 1.02342 1.02053 1.21706 0.97869 0.96315 0.99950 1.21974 0.79364 0.97088 1.03749 1.43666 1.06591 1.59234 1.04419 1.19533 1.09929 1.27107 0.91667 0.90978 1.26320 0.96431 0.92283 1.04517 1.69973 1.31304 1.14701 1.35668 0.84997 0.78429 0.79180 0.76092 1.19748 1.18662 1.18878 1.17735 0.86387 0.84186 0.82785 1.90537 1.14567 1.58243 1.86976 1.23660 0.90473 1.07578 0.97147 1.22483 1.02081 1.07726 0.89173 1.24669 0.84200 1.01941 0.96816 1.20701 1.05630 0.90874 0.81738 1.61875 1.36898 1.12714 1.17210 1.22458 1.02105 1.03238 0.84230 1.22493 0.89935 0.99861 1.00856 1.84754 1.33882 1.65015 1.11299 1.74404 1.15446 1.17529 0.96729 0.92172 0.91071 0.92602 0.94181 0.93608 0.89491 0.90526 0.91051 0.80341 0.85693 0.89075 0.94115 0.90425 0.89792 0.93416 0.90109 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.91 71.98 0.71 -3.56 16 2 C -0.12 -5.04 5.83 30.59 0.18 -4.86 16 3 C 0.10 5.01 4.51 86.38 0.39 5.40 16 4 N -0.42 -24.02 2.53 -638.46 -1.62 -25.64 16 5 C -0.35 -21.13 8.94 84.13 0.75 -20.38 16 6 H 0.07 4.51 7.71 -2.91 -0.02 4.49 16 7 C 0.01 0.48 4.92 84.98 0.42 0.90 16 8 N -0.88 -48.88 11.46 21.69 0.25 -48.63 16 9 Si 0.99 42.71 29.60 68.60 2.03 44.74 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 12 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 13 C 0.50 28.16 7.60 86.88 0.66 28.82 16 14 O -0.62 -38.14 16.80 -3.87 -0.06 -38.21 16 15 C -0.03 -1.43 6.71 42.92 0.29 -1.15 16 16 C -0.19 -6.76 9.60 22.61 0.22 -6.54 16 17 C -0.01 -0.34 6.33 25.00 0.16 -0.18 16 18 C 0.14 2.43 5.52 85.56 0.47 2.90 16 19 N -0.56 -10.04 5.01 -953.46 -4.78 -14.81 16 20 C 0.03 0.29 9.57 127.69 1.22 1.52 16 21 C 0.02 0.31 9.29 127.69 1.19 1.50 16 22 O 0.12 4.15 11.18 71.75 0.80 4.95 16 23 N -0.34 -13.84 7.68 -49.48 -0.38 -14.22 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.72 7.27 -2.39 -0.02 1.70 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.09 4.60 5.53 -2.38 -0.01 4.59 16 30 H 0.08 3.75 5.25 -2.39 -0.01 3.73 16 31 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.18 5.82 8.06 -2.91 -0.02 5.79 16 33 H 0.13 1.60 8.06 -2.39 -0.02 1.58 16 34 H 0.09 1.27 8.12 -2.39 -0.02 1.25 16 35 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.08 0.78 8.12 -2.39 -0.02 0.77 16 37 H 0.08 0.74 8.12 -2.38 -0.02 0.72 16 38 H 0.05 1.17 6.35 -2.39 -0.02 1.15 16 39 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 40 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -73.43 332.18 3.93 -69.50 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 1.03 Total: 17.95 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 6.66 Total: 4.37 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -6.52 Total: -103.31 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: 0.74 Total: -33.26 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -73.43 3.93 -69.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355619413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.837 kcal (2) G-P(sol) polarization free energy of solvation -73.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds