Wall clock time and date at job start Tue Mar 31 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46815 * 2 1 4 4 C 1.53001 * 109.47182 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47084 * 179.97438 * 4 3 2 6 6 C 1.34784 * 119.99864 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99649 * 359.72839 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.72721 * 6 5 4 9 9 C 1.50698 * 109.47166 * 179.97438 * 8 6 5 10 10 N 1.29945 * 126.28598 * 90.02456 * 9 8 6 11 11 O 1.21304 * 110.25537 * 179.97438 * 10 9 8 12 12 C 1.33651 * 109.80804 * 359.97438 * 11 10 9 13 13 C 1.50697 * 126.55215 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47525 * 269.97915 * 13 12 11 15 15 C 1.50696 * 109.47150 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00081 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99612 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00599 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99580 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47400 * 59.99898 * 19 17 15 21 21 H 1.48503 * 109.47123 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46855 * 299.99501 * 19 17 15 23 23 N 1.31129 * 106.89403 * 359.76741 * 12 11 10 24 24 H 1.09003 * 109.46771 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47254 * 299.99813 * 1 2 3 26 26 H 1.09001 * 109.47075 * 60.00250 * 1 2 3 27 27 H 1.08993 * 109.47254 * 240.00186 * 2 1 3 28 28 H 1.09001 * 109.47075 * 119.99750 * 2 1 3 29 29 H 1.09007 * 109.47291 * 60.00109 * 3 2 1 30 30 H 1.08993 * 109.47243 * 300.00018 * 3 2 1 31 31 H 1.09007 * 109.46593 * 60.00081 * 4 3 2 32 32 H 1.09006 * 109.47216 * 300.00539 * 4 3 2 33 33 H 0.97000 * 120.00740 * 359.72857 * 5 4 3 34 34 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 35 35 H 1.09002 * 109.47054 * 60.00213 * 8 6 5 36 36 H 1.09000 * 109.46893 * 29.98202 * 13 12 11 37 37 H 1.09003 * 109.46755 * 149.97369 * 13 12 11 38 38 H 1.09004 * 109.46576 * 300.00191 * 14 13 12 39 39 H 1.08997 * 109.47048 * 59.99456 * 14 13 12 40 40 H 0.96993 * 120.00124 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.3833 3.0702 -0.0001 7 8 6.1714 2.1483 0.0053 8 6 5.8856 4.4910 -0.0069 9 6 7.3926 4.4910 -0.0050 10 7 8.1629 4.4860 -1.0514 11 8 9.3284 4.4882 -0.7150 12 6 9.4147 4.4956 0.6187 13 6 10.6807 4.5000 1.4361 14 6 11.1087 3.0591 1.7213 15 6 12.3744 3.0635 2.5392 16 1 12.8284 4.0004 2.8266 17 6 12.9528 1.8715 2.9207 18 7 12.4003 0.7306 2.5705 19 14 14.5213 1.8770 3.9353 20 1 14.2788 2.5848 5.2180 21 1 14.9362 0.4784 4.2130 22 1 15.5957 2.5721 3.1817 23 7 8.1872 4.5029 1.0800 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9336 0.9287 -0.8892 32 1 3.9330 0.9289 0.8909 33 1 3.4279 3.5611 -0.0047 34 1 5.5231 5.0002 -0.8999 35 1 5.5215 5.0093 0.8801 36 1 11.4688 5.0104 0.8825 37 1 10.5033 5.0195 2.3778 38 1 10.3205 2.5488 2.2749 39 1 11.2860 2.5396 0.7796 40 1 12.8071 -0.1079 2.8392 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359922346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:08 Heat of formation + Delta-G solvation = -1.027438 kcal Electronic energy + Delta-G solvation = -20939.346647 eV Core-core repulsion = 17563.520452 eV Total energy + Delta-G solvation = -3375.826195 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.06153 -39.81355 -36.55231 -35.53679 -34.48925 -33.97597 -32.64036 -30.90311 -29.88328 -28.57695 -25.78653 -24.10396 -23.15375 -22.09979 -21.71164 -20.89686 -20.04568 -17.81247 -17.18169 -16.80713 -16.36899 -16.25323 -16.09542 -15.24295 -14.51536 -14.25024 -14.11268 -13.99535 -13.71972 -13.66990 -13.03579 -12.73550 -12.54319 -12.31028 -11.92643 -11.78358 -11.53653 -11.52880 -11.50867 -11.12162 -11.03674 -10.93537 -10.73461 -10.54323 -10.10110 -10.05520 -9.86791 -9.28088 -9.27561 -9.10990 -8.38848 -6.02446 -4.07793 1.65057 2.51485 2.53104 3.08799 3.33966 3.37997 3.39647 3.44313 3.90434 4.35549 4.42205 4.45359 4.52632 4.56794 4.74447 4.98316 5.03031 5.14383 5.17956 5.25702 5.33312 5.38147 5.49258 5.62537 5.65486 5.71697 5.84360 5.90969 6.03576 6.17141 6.20794 6.29513 6.47859 6.69402 7.25620 7.57698 7.65112 7.92840 8.08484 8.28005 8.63781 8.97547 9.56560 11.08643 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.002918 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.614861 B = 9594.638039 C =10777.701865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.130 4.130 4 C 0.117 3.883 5 N -0.734 5.734 6 C 0.516 3.484 7 O -0.516 6.516 8 C -0.044 4.044 9 C 0.178 3.822 10 N -0.389 5.389 11 O 0.072 5.928 12 C 0.217 3.783 13 C -0.028 4.028 14 C 0.027 3.973 15 C -0.526 4.526 16 H 0.061 0.939 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 N -0.490 5.490 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.400 0.600 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.027 0.973 39 H 0.024 0.976 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.393 5.914 -5.722 23.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.168 4.168 4 C -0.006 4.006 5 N -0.387 5.387 6 C 0.300 3.700 7 O -0.389 6.389 8 C -0.085 4.085 9 C -0.096 4.096 10 N -0.099 5.099 11 O 0.014 5.986 12 C -0.002 4.002 13 C -0.067 4.067 14 C -0.011 4.011 15 C -0.564 4.564 16 H 0.079 0.921 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 N -0.223 5.223 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.234 0.766 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.408 5.035 -6.211 23.792 hybrid contribution 0.582 0.135 0.584 0.836 sum -21.826 5.170 -5.627 23.125 Atomic orbital electron populations 1.21762 0.95502 1.01847 1.01812 1.21446 0.96065 0.95889 1.02769 1.21825 0.94049 0.98194 1.02741 1.21399 0.93623 0.82780 1.02815 1.45880 1.06712 1.09045 1.77107 1.20291 0.82328 0.90927 0.76457 1.90831 1.55030 1.46010 1.47056 1.19764 0.86312 0.95914 1.06543 1.24705 0.98204 1.01955 0.84743 1.74482 0.89771 1.21609 1.24063 1.85257 1.21743 1.65940 1.25646 1.29564 0.97554 0.91752 0.81343 1.20753 0.85471 1.04395 0.96074 1.19155 0.97017 0.87049 0.97865 1.21028 1.08675 0.92713 1.34030 0.92085 1.25027 0.97647 0.95525 0.96111 1.69969 1.39861 0.97408 1.45569 0.86572 0.83277 0.77024 0.80608 1.20123 1.21293 1.20093 1.71849 0.99981 1.21814 1.28677 0.92558 0.92669 0.92735 0.91575 0.91475 0.91192 0.91292 0.91436 0.91222 0.76583 0.86415 0.85817 0.89083 0.88211 0.95468 0.95769 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.76 5.93 -26.73 -0.16 -0.92 16 3 C -0.13 -0.79 5.33 -26.73 -0.14 -0.93 16 4 C 0.12 1.10 5.67 -4.04 -0.02 1.08 16 5 N -0.73 -6.96 5.56 -60.29 -0.33 -7.29 16 6 C 0.52 7.30 7.82 -10.98 -0.09 7.22 16 7 O -0.52 -10.44 16.03 5.56 0.09 -10.35 16 8 C -0.04 -0.54 6.33 -29.04 -0.18 -0.72 16 9 C 0.18 3.21 6.71 -156.37 -1.05 2.16 16 10 N -0.39 -7.56 12.16 30.90 0.38 -7.18 16 11 O 0.07 1.44 11.31 18.08 0.20 1.64 16 12 C 0.22 4.40 7.77 -13.06 -0.10 4.30 16 13 C -0.03 -0.56 5.78 -27.89 -0.16 -0.72 16 14 C 0.03 0.71 4.95 -27.89 -0.14 0.57 16 15 C -0.53 -14.50 9.11 -34.44 -0.31 -14.81 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 19 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 N -0.49 -9.91 11.55 -9.86 -0.11 -10.03 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.40 2.22 8.47 -40.82 -0.35 1.88 16 34 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 348.19 15.07 5.25 5.25 Total: -1.00 -35.89 348.19 -7.13 -43.02 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -6.23 Total: -3.51 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -2.09 Total: -1.62 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.66 Total: -50.82 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.29 Total: -8.71 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.89 -7.13 -43.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359922346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.997 kcal (2) G-P(sol) polarization free energy of solvation -35.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds