Wall clock time and date at job start Tue Mar 31 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46815 * 2 1 4 4 C 1.53001 * 109.47182 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47084 * 179.97438 * 4 3 2 6 6 C 1.34784 * 119.99864 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99649 * 359.72839 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.72721 * 6 5 4 9 9 C 1.50698 * 109.47166 * 179.97438 * 8 6 5 10 10 N 1.29945 * 126.28598 * 90.02456 * 9 8 6 11 11 O 1.21304 * 110.25537 * 179.97438 * 10 9 8 12 12 C 1.33651 * 109.80804 * 359.97438 * 11 10 9 13 13 C 1.50697 * 126.55215 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47525 * 269.97915 * 13 12 11 15 15 C 1.50696 * 109.47150 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00081 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99612 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00599 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99580 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47400 * 59.99898 * 19 17 15 21 21 H 1.48503 * 109.47123 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46855 * 299.99501 * 19 17 15 23 23 N 1.31129 * 106.89403 * 359.76741 * 12 11 10 24 24 H 1.09003 * 109.46771 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47254 * 299.99813 * 1 2 3 26 26 H 1.09001 * 109.47075 * 60.00250 * 1 2 3 27 27 H 1.08993 * 109.47254 * 240.00186 * 2 1 3 28 28 H 1.09001 * 109.47075 * 119.99750 * 2 1 3 29 29 H 1.09007 * 109.47291 * 60.00109 * 3 2 1 30 30 H 1.08993 * 109.47243 * 300.00018 * 3 2 1 31 31 H 1.09007 * 109.46593 * 60.00081 * 4 3 2 32 32 H 1.09006 * 109.47216 * 300.00539 * 4 3 2 33 33 H 0.97000 * 120.00740 * 359.72857 * 5 4 3 34 34 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 35 35 H 1.09002 * 109.47054 * 60.00213 * 8 6 5 36 36 H 1.09000 * 109.46893 * 29.98202 * 13 12 11 37 37 H 1.09003 * 109.46755 * 149.97369 * 13 12 11 38 38 H 1.09004 * 109.46576 * 300.00191 * 14 13 12 39 39 H 1.08997 * 109.47048 * 59.99456 * 14 13 12 40 40 H 0.96993 * 120.00124 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.3833 3.0702 -0.0001 7 8 6.1714 2.1483 0.0053 8 6 5.8856 4.4910 -0.0069 9 6 7.3926 4.4910 -0.0050 10 7 8.1629 4.4860 -1.0514 11 8 9.3284 4.4882 -0.7150 12 6 9.4147 4.4956 0.6187 13 6 10.6807 4.5000 1.4361 14 6 11.1087 3.0591 1.7213 15 6 12.3744 3.0635 2.5392 16 1 12.8284 4.0004 2.8266 17 6 12.9528 1.8715 2.9207 18 7 12.4003 0.7306 2.5705 19 14 14.5213 1.8770 3.9353 20 1 14.2788 2.5848 5.2180 21 1 14.9362 0.4784 4.2130 22 1 15.5957 2.5721 3.1817 23 7 8.1872 4.5029 1.0800 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9336 0.9287 -0.8892 32 1 3.9330 0.9289 0.8909 33 1 3.4279 3.5611 -0.0047 34 1 5.5231 5.0002 -0.8999 35 1 5.5215 5.0093 0.8801 36 1 11.4688 5.0104 0.8825 37 1 10.5033 5.0195 2.3778 38 1 10.3205 2.5488 2.2749 39 1 11.2860 2.5396 0.7796 40 1 12.8071 -0.1079 2.8392 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359922346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:08 Heat of formation + Delta-G solvation = -28.099293 kcal Electronic energy + Delta-G solvation = -20940.520570 eV Core-core repulsion = 17563.520452 eV Total energy + Delta-G solvation = -3377.000119 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.56218 -40.92138 -37.39951 -36.99064 -36.26312 -34.80406 -34.48478 -32.41401 -31.23987 -29.38354 -27.75651 -25.12238 -24.56382 -23.69751 -22.46612 -22.21932 -21.23432 -19.25737 -18.73891 -18.27231 -17.98745 -17.18226 -17.03293 -16.50928 -16.17996 -15.69209 -15.41010 -14.98823 -14.73749 -14.48072 -14.45436 -14.27846 -13.71468 -13.38767 -13.29930 -13.20992 -12.79203 -12.76646 -12.52360 -12.49870 -12.15264 -12.11339 -12.01763 -11.92585 -11.88551 -11.53136 -11.37745 -11.18824 -10.74770 -10.57062 -10.24054 -8.20049 -6.33748 0.11539 1.11300 1.44640 1.45054 1.49214 1.56730 1.85822 2.10001 2.43572 2.66114 3.01773 3.14532 3.67051 3.83683 3.94253 3.98487 4.16334 4.19394 4.33094 4.40202 4.51838 4.52150 4.61197 4.63959 4.73077 4.90024 4.91779 4.92842 4.96457 5.03641 5.24048 5.33663 5.33745 5.42164 5.45047 5.50784 5.76716 6.11476 6.41500 6.82632 7.11025 7.13031 7.36769 8.92534 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.002918 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.614861 B = 9594.638039 C =10777.701865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C -0.117 4.117 4 C 0.115 3.885 5 N -0.707 5.707 6 C 0.512 3.488 7 O -0.589 6.589 8 C -0.042 4.042 9 C 0.180 3.820 10 N -0.403 5.403 11 O 0.059 5.941 12 C 0.208 3.792 13 C -0.013 4.013 14 C 0.033 3.967 15 C -0.538 4.538 16 H 0.083 0.917 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.975 3.025 20 H -0.262 1.262 21 H -0.290 1.290 22 H -0.260 1.260 23 N -0.507 5.507 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.424 0.576 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.119 0.881 37 H 0.118 0.882 38 H -0.014 1.014 39 H -0.008 1.008 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.518 8.151 -5.277 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.154 4.154 4 C -0.009 4.009 5 N -0.361 5.361 6 C 0.298 3.702 7 O -0.469 6.469 8 C -0.083 4.083 9 C -0.094 4.094 10 N -0.116 5.116 11 O 0.005 5.995 12 C -0.012 4.012 13 C -0.052 4.052 14 C -0.005 4.005 15 C -0.576 4.576 16 H 0.101 0.899 17 C -0.203 4.203 18 N -0.579 5.579 19 Si 0.799 3.201 20 H -0.187 1.187 21 H -0.216 1.216 22 H -0.185 1.185 23 N -0.241 5.241 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.262 0.738 34 H 0.178 0.822 35 H 0.178 0.822 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.005 0.995 39 H 0.010 0.990 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.581 7.335 -5.776 25.362 hybrid contribution 0.796 -0.594 0.408 1.073 sum -22.786 6.741 -5.368 24.361 Atomic orbital electron populations 1.21740 0.94391 1.02113 1.02412 1.21472 0.96986 0.95899 1.02165 1.21753 0.90988 0.98452 1.04246 1.21444 0.96024 0.82355 1.01070 1.45698 1.05686 1.10058 1.74635 1.20695 0.83131 0.90967 0.75410 1.90814 1.57062 1.48136 1.50909 1.20143 0.82568 0.95233 1.10361 1.25664 1.00499 0.99639 0.83563 1.74460 0.89662 1.22711 1.24736 1.85230 1.22422 1.66362 1.25497 1.29526 0.97793 0.92241 0.81625 1.20526 0.86430 1.00700 0.97526 1.18936 0.95798 0.90213 0.95553 1.21547 1.08907 0.93614 1.33504 0.89902 1.26118 1.01625 0.95065 0.97481 1.70148 1.42017 0.98268 1.47429 0.85346 0.78619 0.77000 0.79140 1.18698 1.21597 1.18482 1.71858 1.00331 1.22069 1.29815 0.92559 0.92141 0.92007 0.92125 0.92337 0.89771 0.89542 0.93048 0.93369 0.73767 0.82201 0.82199 0.86298 0.86429 0.99510 0.98994 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.13 -1.45 5.93 30.60 0.18 -1.27 16 3 C -0.12 -1.19 5.33 30.60 0.16 -1.03 16 4 C 0.11 2.12 5.67 86.38 0.49 2.61 16 5 N -0.71 -12.15 5.56 -463.05 -2.57 -14.72 16 6 C 0.51 14.08 7.82 87.65 0.69 14.76 16 7 O -0.59 -24.71 16.03 -3.04 -0.05 -24.76 16 8 C -0.04 -0.93 6.33 29.10 0.18 -0.75 16 9 C 0.18 6.36 6.71 138.46 0.93 7.29 16 10 N -0.40 -15.61 12.16 -60.29 -0.73 -16.34 16 11 O 0.06 2.39 11.31 74.76 0.85 3.24 16 12 C 0.21 8.50 7.77 88.38 0.69 9.18 16 13 C -0.01 -0.53 5.78 29.85 0.17 -0.35 16 14 C 0.03 1.79 4.95 29.85 0.15 1.94 16 15 C -0.54 -29.73 9.11 25.60 0.23 -29.49 16 16 H 0.08 4.12 7.74 -2.91 -0.02 4.10 16 17 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 18 N -0.94 -58.91 13.29 21.45 0.28 -58.62 16 19 Si 0.98 43.80 29.54 68.60 2.03 45.83 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 23 N -0.51 -20.45 11.55 -303.16 -3.50 -23.95 16 24 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.42 3.23 8.47 -92.71 -0.79 2.44 16 34 H 0.16 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.16 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 37 H 0.12 4.29 8.14 -2.39 -0.02 4.27 16 38 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 40 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -82.46 348.19 1.60 -80.86 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 0.25 Total: 6.02 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.05 Total: 2.46 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -6.52 Total: -113.64 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.80 Total: -21.52 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -82.46 1.60 -80.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359922346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.758 kcal (2) G-P(sol) polarization free energy of solvation -82.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds