Wall clock time and date at job start Tue Mar 31 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42905 * 114.00444 * 2 1 4 4 C 1.52995 * 109.47286 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46936 * 304.99570 * 4 3 2 6 6 C 1.52992 * 109.47326 * 65.00396 * 4 3 2 7 7 N 1.46505 * 109.46831 * 185.00461 * 4 3 2 8 8 C 1.36335 * 125.86079 * 324.99736 * 7 4 3 9 9 C 1.35131 * 108.89781 * 179.72761 * 8 7 4 10 10 C 1.40984 * 108.23702 * 0.44162 * 9 8 7 11 11 N 1.33303 * 126.35452 * 179.83199 * 10 9 8 12 12 C 1.32906 * 120.00245 * 359.68030 * 11 10 9 13 13 O 1.21593 * 119.99958 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99982 * 179.72932 * 12 11 10 15 15 C 1.52996 * 109.46969 * 180.27716 * 14 12 11 16 16 C 1.50700 * 109.46969 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00300 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99923 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99834 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99926 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47112 * 89.99781 * 20 18 16 22 22 H 1.48498 * 109.47011 * 210.00049 * 20 18 16 23 23 H 1.48499 * 109.47134 * 329.99670 * 20 18 16 24 24 N 1.37279 * 107.28654 * 359.56315 * 10 9 8 25 25 H 0.96996 * 126.35210 * 180.27222 * 24 10 9 26 26 H 1.09001 * 109.47628 * 59.99149 * 1 2 3 27 27 H 1.08998 * 109.47448 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47291 * 299.99746 * 1 2 3 29 29 H 1.09003 * 109.46512 * 59.99687 * 3 2 1 30 30 H 1.09005 * 109.46608 * 300.00671 * 3 2 1 31 31 H 1.08999 * 109.46917 * 299.99662 * 6 4 3 32 32 H 1.09001 * 109.47207 * 59.99284 * 6 4 3 33 33 H 1.09002 * 109.47047 * 179.97438 * 6 4 3 34 34 H 1.08006 * 125.55263 * 359.97438 * 8 7 4 35 35 H 1.07998 * 125.88037 * 180.26551 * 9 8 7 36 36 H 1.09000 * 109.47028 * 300.27953 * 14 12 11 37 37 H 1.08998 * 109.47115 * 60.27464 * 14 12 11 38 38 H 1.09000 * 109.47439 * 299.99985 * 15 14 12 39 39 H 1.08998 * 109.47408 * 59.99927 * 15 14 12 40 40 H 0.97008 * 120.00194 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8514 0.5682 0.8410 6 6 3.9952 0.5369 -1.3083 7 7 4.1309 2.5177 0.1199 8 6 3.6328 3.6667 -0.4191 9 6 4.4486 4.6931 -0.0920 10 6 5.5142 4.1821 0.6767 11 7 6.5281 4.8820 1.1856 12 6 6.6011 6.1927 0.9783 13 8 5.7428 6.7536 0.3247 14 6 7.7441 6.9850 1.5588 15 6 7.5870 8.4590 1.1804 16 6 8.7297 9.2513 1.7614 17 1 9.4915 8.7534 2.3429 18 6 8.8026 10.6120 1.5508 19 7 9.7994 11.3035 2.0583 20 14 7.4845 11.4734 0.5457 21 1 6.3908 11.9219 1.4444 22 1 8.0754 12.6504 -0.1405 23 1 6.9396 10.5328 -0.4659 24 7 5.3106 2.8309 0.8088 25 1 5.8779 2.2083 1.2899 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.5521 -0.4549 -1.3978 32 1 3.6791 1.1534 -2.1498 33 1 5.0818 0.4512 -1.3089 34 1 2.7308 3.7445 -1.0080 35 1 4.3097 5.7265 -0.3736 36 1 7.7404 6.8861 2.6443 37 1 8.6865 6.6066 1.1629 38 1 7.5908 8.5579 0.0949 39 1 6.6446 8.8374 1.5763 40 1 9.8510 12.2608 1.9098 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360663426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:38 Heat of formation + Delta-G solvation = 29.097261 kcal Electronic energy + Delta-G solvation = -21221.762248 eV Core-core repulsion = 17847.242358 eV Total energy + Delta-G solvation = -3374.519890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.67565 -39.03037 -38.47238 -35.52119 -33.29847 -32.79583 -31.76489 -31.03581 -29.05013 -28.16464 -26.37518 -25.82631 -23.19759 -22.35400 -21.58734 -20.40298 -18.86682 -17.94700 -16.86251 -16.84193 -16.49861 -16.21806 -15.80232 -15.39732 -15.19116 -14.55138 -14.49023 -14.08899 -13.90177 -13.42745 -13.32914 -13.21586 -12.76880 -12.40899 -12.37861 -12.27452 -12.06792 -11.72534 -11.19395 -10.79991 -10.58862 -10.47968 -9.85588 -9.80821 -9.69180 -9.59223 -9.30486 -8.94185 -8.45612 -8.33868 -7.50656 -5.86077 -3.82507 0.97203 1.01180 2.53883 2.96424 3.32939 3.49866 3.55031 3.68348 3.91297 4.06244 4.24187 4.29592 4.33317 4.56866 4.65163 4.66397 4.73741 4.78258 4.90298 5.01917 5.04647 5.09034 5.33715 5.43204 5.49537 5.50774 6.03261 6.26368 6.27615 6.58087 6.63336 6.67931 6.96942 7.08345 7.46931 7.63441 7.72243 7.96961 8.08527 8.72549 9.18383 9.30423 9.78013 11.27184 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.043823 B = 0.002700 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.786483 B =10366.084486 C =10726.093686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.054 3.946 4 C 0.166 3.834 5 H 0.107 0.893 6 C -0.166 4.166 7 N -0.391 5.391 8 C 0.132 3.868 9 C -0.288 4.288 10 C 0.477 3.523 11 N -0.672 5.672 12 C 0.496 3.504 13 O -0.564 6.564 14 C -0.098 4.098 15 C -0.001 4.001 16 C -0.517 4.517 17 H 0.072 0.928 18 C 0.065 3.935 19 N -0.908 5.908 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.261 1.261 24 N -0.480 5.480 25 H 0.447 0.553 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.188 0.812 35 H 0.193 0.807 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.020 0.980 39 H 0.016 0.984 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.222 -28.807 -6.713 36.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.024 4.024 4 C 0.065 3.935 5 H 0.125 0.875 6 C -0.224 4.224 7 N -0.185 5.185 8 C -0.003 4.003 9 C -0.320 4.320 10 C 0.222 3.778 11 N -0.429 5.429 12 C 0.286 3.714 13 O -0.444 6.444 14 C -0.138 4.138 15 C -0.039 4.039 16 C -0.555 4.555 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.548 5.548 20 Si 0.706 3.294 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.185 1.185 24 N -0.209 5.209 25 H 0.295 0.705 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.205 0.795 35 H 0.209 0.791 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.039 0.961 39 H 0.034 0.966 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.866 -29.015 -6.544 36.333 hybrid contribution -0.990 0.720 -0.537 1.336 sum -21.856 -28.295 -7.081 36.448 Atomic orbital electron populations 1.22829 0.79577 1.03425 1.00586 1.87808 1.20747 1.26142 1.95578 1.22691 0.91447 0.86125 1.02164 1.21070 0.91918 0.79233 1.01328 0.87518 1.22300 1.02494 1.01948 0.95697 1.46389 1.16090 1.07503 1.48517 1.22722 0.98519 0.83945 0.95116 1.22908 0.97618 1.02274 1.09197 1.19484 0.90159 0.81880 0.86311 1.69149 1.25618 1.10722 1.37433 1.21818 0.86995 0.84471 0.78160 1.90476 1.40681 1.74483 1.38728 1.21263 0.95154 0.96326 1.01029 1.19401 0.97058 0.90360 0.97091 1.21211 1.08705 0.92653 1.32935 0.90946 1.24994 0.95578 0.97484 0.95486 1.69928 1.31416 1.07381 1.46057 0.86773 0.82209 0.79048 0.81391 1.20392 1.21661 1.18494 1.44231 1.17313 1.07962 1.51363 0.70548 0.93509 0.88960 0.93565 0.91702 0.91718 0.89466 0.91448 0.91520 0.79513 0.79062 0.90025 0.90000 0.96127 0.96598 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 11.01 101.05 1.11 1.20 16 2 O -0.38 -1.85 10.24 -35.23 -0.36 -2.21 16 3 C 0.05 0.21 4.85 37.15 0.18 0.39 16 4 C 0.17 0.76 3.63 -67.93 -0.25 0.51 16 5 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 6 C -0.17 -0.69 9.41 37.15 0.35 -0.34 16 7 N -0.39 -2.93 3.56 -54.56 -0.19 -3.12 16 8 C 0.13 1.11 10.58 -16.66 -0.18 0.93 16 9 C -0.29 -4.01 9.51 -39.65 -0.38 -4.39 16 10 C 0.48 7.38 8.07 -155.19 -1.25 6.13 16 11 N -0.67 -13.11 10.51 -11.59 -0.12 -13.23 16 12 C 0.50 11.31 7.71 -11.81 -0.09 11.22 16 13 O -0.56 -13.66 12.89 5.28 0.07 -13.59 16 14 C -0.10 -2.35 5.71 -27.88 -0.16 -2.51 16 15 C 0.00 -0.03 3.33 -27.88 -0.09 -0.12 16 16 C -0.52 -16.06 9.66 -34.44 -0.33 -16.40 16 17 H 0.07 2.35 7.99 -52.49 -0.42 1.93 16 18 C 0.06 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.91 -29.63 13.96 55.43 0.77 -28.86 16 20 Si 0.88 23.86 27.47 -169.99 -4.67 19.19 16 21 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 23 H -0.26 -7.05 6.54 56.52 0.37 -6.68 16 24 N -0.48 -4.90 7.37 31.32 0.23 -4.67 16 25 H 0.45 3.48 8.96 -182.56 -1.64 1.84 16 26 H 0.05 0.09 8.14 -51.93 -0.42 -0.34 16 27 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.05 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.16 7.40 -51.93 -0.38 -0.22 16 31 H 0.09 0.32 7.82 -51.93 -0.41 -0.09 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.19 0.76 7.37 -52.48 -0.39 0.37 16 35 H 0.19 3.20 5.77 -52.49 -0.30 2.90 16 36 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.08 1.90 8.14 -51.93 -0.42 1.47 16 38 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 39 H 0.02 0.45 7.53 -51.93 -0.39 0.06 16 40 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 337.28 15.07 5.08 5.08 Total: -1.00 -39.89 337.28 -7.64 -47.54 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -7.27 Total: -4.69 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -1.18 Total: -1.43 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.69 Total: -49.88 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.29 Total: -15.80 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -4.67 Total: 19.19 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -39.89 -7.64 -47.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360663426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.635 kcal (2) G-P(sol) polarization free energy of solvation -39.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds