Wall clock time and date at job start Tue Mar 31 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99521 * 2 1 4 4 C 1.50701 * 109.47118 * 179.97438 * 3 2 1 5 5 N 1.31768 * 119.05430 * 89.99444 * 4 3 2 6 6 C 1.33005 * 120.91278 * 180.02562 * 5 4 3 7 7 O 1.35543 * 120.47097 * 179.72780 * 6 5 4 8 8 C 1.42898 * 116.99695 * 0.02562 * 7 6 5 9 9 C 1.38922 * 119.06877 * 0.02562 * 6 5 4 10 10 C 1.39244 * 118.28305 * 0.02562 * 9 6 5 11 11 N 1.38616 * 120.49370 * 179.97438 * 10 9 6 12 12 C 1.46495 * 119.99567 * 190.90021 * 11 10 9 13 13 C 1.46496 * 120.00155 * 10.90315 * 11 10 9 14 14 H 1.09003 * 109.47092 * 1.32344 * 13 11 10 15 15 C 1.52997 * 109.47486 * 121.32343 * 13 11 10 16 16 C 1.50697 * 109.47053 * 241.32842 * 13 11 10 17 17 H 1.07999 * 119.99878 * 359.97438 * 16 13 11 18 18 C 1.37875 * 120.00153 * 179.97438 * 16 13 11 19 19 N 1.31520 * 120.00181 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 120.00227 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.47041 * 60.00211 * 20 18 16 22 22 H 1.48498 * 109.47086 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47187 * 300.00095 * 20 18 16 24 24 N 1.31726 * 119.05138 * 270.02197 * 4 3 2 25 25 H 1.09011 * 109.46916 * 179.97438 * 1 2 3 26 26 H 1.08989 * 109.47712 * 299.99996 * 1 2 3 27 27 H 1.08996 * 109.47090 * 60.00811 * 1 2 3 28 28 H 1.08993 * 109.47487 * 59.99621 * 3 2 1 29 29 H 1.08998 * 109.47226 * 299.99469 * 3 2 1 30 30 H 1.09001 * 109.47371 * 180.02562 * 8 7 6 31 31 H 1.08999 * 109.46967 * 299.99815 * 8 7 6 32 32 H 1.09001 * 109.47672 * 59.99946 * 8 7 6 33 33 H 1.07995 * 120.86068 * 179.97438 * 9 6 5 34 34 H 1.09004 * 109.46968 * 90.00260 * 12 11 10 35 35 H 1.09001 * 109.47012 * 210.00046 * 12 11 10 36 36 H 1.08998 * 109.47788 * 330.00218 * 12 11 10 37 37 H 1.09003 * 109.46954 * 59.99916 * 15 13 11 38 38 H 1.08994 * 109.47542 * 179.97438 * 15 13 11 39 39 H 1.08998 * 109.47283 * 300.00608 * 15 13 11 40 40 H 0.96997 * 120.00490 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.1508 1.1358 -1.1510 6 6 5.4760 1.0304 -1.1935 7 8 6.1231 0.9734 -2.3831 8 6 5.3186 1.0321 -3.5627 9 6 6.1872 0.9734 -0.0015 10 6 5.4761 1.0289 1.1944 11 7 6.1394 0.9751 2.4103 12 6 5.3814 0.7936 3.6507 13 6 7.5984 1.0997 2.4550 14 1 7.9812 1.2507 1.4456 15 6 7.9817 2.2949 3.3299 16 6 8.1925 -0.1581 3.0345 17 1 7.5477 -0.9691 3.3395 18 6 9.5591 -0.2737 3.1754 19 7 10.3444 0.7137 2.8036 20 14 10.2955 -1.8326 3.8945 21 1 9.9231 -2.9930 3.0460 22 1 11.7744 -1.7063 3.9396 23 1 9.7745 -2.0375 5.2698 24 7 4.1496 1.1359 1.1524 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8463 -0.8900 30 1 5.9594 0.9766 -4.4427 31 1 4.6206 0.1950 -3.5685 32 1 4.7621 1.9693 -3.5767 33 1 7.2637 0.8873 -0.0023 34 1 5.2834 -0.2709 3.8641 35 1 5.9060 1.2820 4.4719 36 1 4.3908 1.2344 3.5391 37 1 7.5988 2.1439 4.3392 38 1 9.0672 2.3874 3.3635 39 1 7.5519 3.2047 2.9107 40 1 11.3058 0.6326 2.9031 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443522671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:20 Heat of formation + Delta-G solvation = -16.799710 kcal Electronic energy + Delta-G solvation = -22417.590839 eV Core-core repulsion = 19041.080707 eV Total energy + Delta-G solvation = -3376.510132 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66435 -38.33253 -37.78810 -36.55975 -33.32277 -31.91159 -31.43686 -29.20628 -28.21965 -27.34218 -25.97101 -25.35444 -25.20293 -22.45368 -22.27848 -19.78439 -17.99292 -17.41691 -16.56614 -16.41235 -15.73962 -15.67926 -15.49348 -15.27516 -14.74358 -14.56156 -14.07301 -13.94057 -13.28103 -12.98770 -12.79437 -12.49798 -12.37287 -11.82132 -11.62282 -11.53436 -11.35937 -11.31046 -11.10507 -10.88308 -10.75014 -10.47861 -10.27848 -10.17058 -9.80524 -9.74527 -9.18673 -8.85861 -8.66792 -8.52763 -7.03919 -6.16318 -4.25741 1.50977 1.98875 3.19709 3.25180 3.29859 3.33150 3.63305 3.82456 4.31866 4.34855 4.64608 4.82719 5.13913 5.17162 5.24918 5.34986 5.38731 5.45456 5.50581 5.56627 5.61827 5.71625 5.96096 5.97559 6.13824 6.23879 6.42758 6.51015 6.66222 6.76088 6.91019 7.06551 7.20770 7.28527 7.53169 7.62946 7.81541 7.99456 8.13062 8.31809 8.71353 8.84947 9.41751 10.87617 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017554 B = 0.004866 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.671468 B = 5753.110488 C = 6525.855790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.381 6.381 3 C 0.141 3.859 4 C 0.383 3.617 5 N -0.613 5.613 6 C 0.375 3.625 7 O -0.303 6.303 8 C 0.042 3.958 9 C -0.304 4.304 10 C 0.464 3.536 11 N -0.565 5.565 12 C 0.102 3.898 13 C 0.263 3.737 14 H 0.056 0.944 15 C -0.149 4.149 16 C -0.529 4.529 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.889 5.889 20 Si 0.901 3.099 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 N -0.586 5.586 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.155 0.845 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.097 0.903 39 H 0.013 0.987 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 2.580 -6.337 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C 0.062 3.938 4 C 0.112 3.888 5 N -0.351 5.351 6 C 0.194 3.806 7 O -0.208 6.208 8 C -0.053 4.053 9 C -0.333 4.333 10 C 0.221 3.779 11 N -0.272 5.272 12 C -0.041 4.041 13 C 0.163 3.837 14 H 0.074 0.926 15 C -0.208 4.208 16 C -0.567 4.567 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.527 5.527 20 Si 0.728 3.272 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.202 1.202 24 N -0.316 5.316 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.173 0.827 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.115 0.885 39 H 0.032 0.968 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.936 2.499 -6.208 15.460 hybrid contribution 1.041 -0.715 0.245 1.286 sum -12.895 1.784 -5.964 14.319 Atomic orbital electron populations 1.22739 0.80701 1.02813 0.99978 1.87958 1.19691 1.26736 1.95443 1.20868 0.85734 0.85538 1.01648 1.21667 0.95140 0.89607 0.82428 1.67668 1.08362 1.27699 1.31342 1.19522 0.87197 0.88105 0.85752 1.86240 1.35081 1.87197 1.12296 1.22805 0.95811 1.02270 0.84432 1.21210 1.03282 1.19554 0.89234 1.18244 0.86995 0.85751 0.86884 1.47213 1.08202 1.70087 1.01703 1.21447 0.95789 1.00638 0.86216 1.19143 0.71663 0.94972 0.97935 0.92643 1.22134 1.04617 0.95577 0.98453 1.21287 0.91830 1.00825 1.42782 0.92028 1.24878 0.96823 0.96758 0.95101 1.69846 1.04498 1.31310 1.47010 0.86509 0.77871 0.83167 0.79642 1.20143 1.21114 1.20151 1.67694 1.08480 1.25594 1.29855 0.89588 0.93870 0.94020 0.90758 0.91011 0.88966 0.92390 0.92502 0.82728 0.93701 0.91355 0.91540 0.94652 0.88454 0.96763 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.56 10.69 -35.23 -0.38 -5.94 16 3 C 0.14 1.97 6.37 36.01 0.23 2.19 16 4 C 0.38 7.00 7.27 -157.28 -1.14 5.86 16 5 N -0.61 -11.41 9.27 -10.86 -0.10 -11.51 16 6 C 0.38 7.35 7.52 -16.79 -0.13 7.23 16 7 O -0.30 -5.33 10.49 -18.32 -0.19 -5.52 16 8 C 0.04 0.54 10.41 101.05 1.05 1.59 16 9 C -0.30 -6.49 9.28 -38.95 -0.36 -6.85 16 10 C 0.46 10.02 7.35 -154.71 -1.14 8.88 16 11 N -0.57 -12.39 2.86 -175.30 -0.50 -12.89 16 12 C 0.10 1.96 9.86 59.84 0.59 2.55 16 13 C 0.26 6.35 2.55 -69.09 -0.18 6.18 16 14 H 0.06 1.44 5.48 -51.93 -0.28 1.15 16 15 C -0.15 -3.42 8.92 37.16 0.33 -3.09 16 16 C -0.53 -13.84 8.39 -34.44 -0.29 -14.13 16 17 H 0.06 1.64 7.69 -52.49 -0.40 1.24 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -23.94 11.32 55.43 0.63 -23.31 16 20 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 N -0.59 -11.73 9.12 -10.02 -0.09 -11.82 16 25 H 0.09 0.71 8.14 -51.92 -0.42 0.28 16 26 H 0.04 0.35 8.14 -51.94 -0.42 -0.07 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 32 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 33 H 0.16 3.46 6.02 -52.49 -0.32 3.14 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.26 6.36 -51.93 -0.33 0.92 16 36 H 0.07 1.17 7.27 -51.93 -0.38 0.80 16 37 H 0.03 0.77 6.62 -51.93 -0.34 0.42 16 38 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 39 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 334.03 15.07 5.03 5.03 Total: -1.00 -29.65 334.03 -6.36 -36.02 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.73 Total: 0.78 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -0.01 Total: 13.52 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.07 Total: -59.54 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.57 Total: -11.46 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.65 -6.36 -36.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443522671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.215 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds