Wall clock time and date at job start Tue Mar 31 2020 05:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46994 * 2 1 4 4 H 1.08999 * 109.47050 * 175.74027 * 3 2 1 5 5 C 1.50701 * 109.46730 * 55.74106 * 3 2 1 6 6 H 1.08004 * 120.00050 * 239.99781 * 5 3 2 7 7 C 1.37873 * 120.00238 * 60.00370 * 5 3 2 8 8 N 1.31520 * 119.99685 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00433 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47018 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47262 * 119.99534 * 9 7 5 12 12 H 1.48498 * 109.47349 * 239.99698 * 9 7 5 13 13 N 1.46901 * 109.47040 * 295.74449 * 3 2 1 14 14 C 1.46903 * 110.99967 * 272.87925 * 13 3 2 15 15 H 1.09001 * 109.47015 * 36.44341 * 14 13 3 16 16 C 1.52999 * 109.46962 * 276.44988 * 14 13 3 17 17 C 1.50698 * 109.47212 * 156.44729 * 14 13 3 18 18 O 1.21277 * 120.00065 * 359.97438 * 17 14 13 19 19 N 1.34771 * 119.99801 * 180.02562 * 17 14 13 20 20 C 1.38731 * 119.99887 * 179.97438 * 19 17 14 21 21 C 1.36523 * 126.88109 * 179.97438 * 20 19 17 22 22 C 1.40946 * 103.92189 * 179.97438 * 21 20 19 23 23 C 1.50698 * 126.73531 * 180.02562 * 22 21 20 24 24 N 1.30335 * 106.53405 * 359.97438 * 22 21 20 25 25 O 1.20901 * 111.81677 * 359.73227 * 24 22 21 26 26 H 1.08995 * 109.47471 * 305.11856 * 1 2 3 27 27 H 1.09005 * 109.47477 * 65.12352 * 1 2 3 28 28 H 1.09002 * 109.47191 * 185.11783 * 1 2 3 29 29 H 1.08993 * 109.47183 * 119.99826 * 2 1 3 30 30 H 1.08997 * 109.47234 * 240.00397 * 2 1 3 31 31 H 0.97001 * 119.99593 * 180.02562 * 8 7 5 32 32 H 1.00903 * 111.00339 * 36.83379 * 13 3 2 33 33 H 1.09002 * 109.47189 * 180.02562 * 16 14 13 34 34 H 1.09001 * 109.46727 * 299.99529 * 16 14 13 35 35 H 1.08994 * 109.47584 * 59.99959 * 16 14 13 36 36 H 0.96996 * 120.00426 * 0.02562 * 19 17 14 37 37 H 1.07997 * 128.03940 * 0.02562 * 21 20 19 38 38 H 1.09006 * 109.47248 * 89.99358 * 23 22 21 39 39 H 1.09002 * 109.47596 * 209.99744 * 23 22 21 40 40 H 1.09001 * 109.47239 * 329.99599 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1273 1.4435 0.0763 5 6 1.4533 2.1827 1.1743 6 1 0.8415 3.0575 1.0103 7 6 1.6975 1.7431 2.4581 8 7 2.4421 0.6775 2.6578 9 14 0.9708 2.6609 3.9138 10 1 0.1769 3.8164 3.4241 11 1 0.0902 1.7474 4.6854 12 1 2.0671 3.1481 4.7890 13 7 1.6360 2.1047 -1.2475 14 6 2.6234 1.8729 -2.3102 15 1 3.0235 0.8630 -2.2203 16 6 3.7621 2.8862 -2.1782 17 6 1.9615 2.0333 -3.6546 18 8 0.7833 2.3127 -3.7209 19 7 2.6788 1.8652 -4.7831 20 6 2.0694 2.0123 -6.0207 21 6 2.6577 1.8755 -7.2451 22 6 1.6101 2.1251 -8.1544 23 6 1.6987 2.1065 -9.6586 24 7 0.5494 2.3741 -7.4390 25 8 0.7816 2.3111 -6.2542 26 1 -0.3634 0.5911 0.8405 27 1 -0.3634 0.4323 -0.9323 28 1 -0.3634 -1.0236 0.0917 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.6136 0.3681 3.5609 32 1 0.7171 1.8035 -1.5357 33 1 4.4945 2.7145 -2.9670 34 1 3.3620 3.8961 -2.2681 35 1 4.2408 2.7702 -1.2059 36 1 3.6209 1.6406 -4.7301 37 1 3.6864 1.6318 -7.4656 38 1 1.4833 1.1020 -10.0230 39 1 0.9740 2.8069 -10.0740 40 1 2.7029 2.3973 -9.9671 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579489592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:44 Heat of formation + Delta-G solvation = 25.982219 kcal Electronic energy + Delta-G solvation = -22219.859881 eV Core-core repulsion = 18845.204912 eV Total energy + Delta-G solvation = -3374.654969 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.93571 -40.17777 -36.69132 -35.53599 -34.79015 -33.37477 -31.39345 -30.36242 -28.84182 -28.49231 -26.21873 -24.42615 -23.38108 -23.28341 -21.40428 -19.79796 -19.10139 -18.37658 -17.75653 -17.39281 -16.09695 -15.90878 -15.51901 -14.95252 -14.71520 -13.93456 -13.83765 -13.57566 -13.22884 -13.13378 -12.95435 -12.82576 -12.74587 -12.22950 -12.00673 -11.75170 -11.43709 -11.32487 -11.25020 -10.95092 -10.75600 -10.53154 -10.14247 -10.08105 -9.96900 -9.75803 -9.60104 -9.01535 -8.62051 -8.37206 -7.37534 -6.01170 -4.01961 1.28742 2.04787 2.11118 2.70386 3.31175 3.39015 3.39992 3.46136 4.02664 4.42650 4.57367 4.75876 4.87481 5.00476 5.17494 5.23690 5.31055 5.34735 5.39426 5.51453 5.54421 5.88372 5.90188 6.09844 6.14607 6.31874 6.36444 6.52131 6.53637 6.83741 6.88171 7.16827 7.21751 7.48854 7.64863 7.84659 7.88398 8.20797 8.26619 8.45744 8.53432 9.04557 9.61902 11.06122 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.039628 B = 0.003410 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.394463 B = 8208.398577 C = 8329.378021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 C 0.215 3.785 4 H 0.037 0.963 5 C -0.486 4.486 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.667 5.667 14 C 0.074 3.926 15 H 0.069 0.931 16 C -0.135 4.135 17 C 0.507 3.493 18 O -0.481 6.481 19 N -0.632 5.632 20 C 0.226 3.774 21 C -0.286 4.286 22 C 0.036 3.964 23 C -0.074 4.074 24 N -0.372 5.372 25 O 0.111 5.889 26 H 0.070 0.930 27 H 0.029 0.971 28 H 0.024 0.976 29 H 0.096 0.904 30 H 0.008 0.992 31 H 0.259 0.741 32 H 0.344 0.656 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.432 0.568 37 H 0.173 0.827 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.645 -0.317 -18.587 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.187 4.187 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.525 4.525 6 H 0.082 0.918 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.303 5.303 14 C -0.040 4.040 15 H 0.086 0.914 16 C -0.193 4.193 17 C 0.295 3.705 18 O -0.350 6.350 19 N -0.287 5.287 20 C 0.065 3.935 21 C -0.313 4.313 22 C -0.123 4.123 23 C -0.131 4.131 24 N -0.083 5.083 25 O 0.052 5.948 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.114 0.886 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.166 0.834 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.272 0.728 37 H 0.191 0.809 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.789 0.709 -18.467 18.865 hybrid contribution 0.860 -0.951 0.703 1.462 sum 4.649 -0.241 -17.764 18.364 Atomic orbital electron populations 1.21616 0.97518 0.98858 1.01059 1.22143 0.95253 1.01013 1.00271 1.19332 0.96031 0.88550 0.85284 0.94542 1.21070 1.30539 1.11555 0.89331 0.91757 1.24897 0.95496 0.95167 0.98772 1.69881 1.38851 1.23826 1.21115 0.86498 0.78890 0.79905 0.82499 1.19674 1.21231 1.21205 1.60950 1.03782 1.63315 1.02243 1.21493 0.95661 0.99679 0.87118 0.91367 1.21789 0.95527 0.99326 1.02683 1.21789 0.87415 0.75263 0.86042 1.90794 1.15438 1.42481 1.86313 1.43146 1.14410 1.70023 1.01135 1.20949 0.85748 0.98714 0.88114 1.21769 1.02360 1.18292 0.88867 1.23184 0.89155 1.01046 0.98892 1.20152 1.03570 1.03387 0.85993 1.73948 1.23243 1.22626 0.88464 1.85145 1.23503 1.66133 1.20068 0.91121 0.95158 0.95649 0.88575 0.97317 0.93147 0.83424 0.93313 0.91522 0.90218 0.72786 0.80906 0.90162 0.90555 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.40 37.16 0.35 -2.53 16 2 C -0.15 -3.34 5.51 -26.73 -0.15 -3.49 16 3 C 0.22 5.05 2.13 -68.86 -0.15 4.90 16 4 H 0.04 0.91 7.01 -51.93 -0.36 0.54 16 5 C -0.49 -12.82 7.29 -34.44 -0.25 -13.07 16 6 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 7 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 8 N -0.90 -24.48 11.36 55.43 0.63 -23.85 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.67 -13.84 5.91 -102.17 -0.60 -14.44 16 14 C 0.07 1.19 2.84 -68.86 -0.20 1.00 16 15 H 0.07 1.04 7.26 -51.93 -0.38 0.66 16 16 C -0.14 -1.86 9.28 37.16 0.34 -1.52 16 17 C 0.51 7.93 7.14 -10.99 -0.08 7.85 16 18 O -0.48 -9.50 14.51 -15.84 -0.23 -9.73 16 19 N -0.63 -7.32 5.29 -11.79 -0.06 -7.39 16 20 C 0.23 2.94 7.92 -15.05 -0.12 2.82 16 21 C -0.29 -2.92 11.15 -39.18 -0.44 -3.36 16 22 C 0.04 0.41 7.31 -82.20 -0.60 -0.19 16 23 C -0.07 -0.53 10.47 36.00 0.38 -0.15 16 24 N -0.37 -5.63 12.06 33.48 0.40 -5.23 16 25 O 0.11 1.82 9.63 -4.77 -0.05 1.77 16 26 H 0.07 1.66 6.90 -51.93 -0.36 1.30 16 27 H 0.03 0.62 6.59 -51.93 -0.34 0.27 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 2.44 6.19 -51.93 -0.32 2.12 16 30 H 0.01 0.17 7.53 -51.93 -0.39 -0.22 16 31 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 32 H 0.34 7.44 5.34 -39.29 -0.21 7.23 16 33 H 0.05 0.46 7.57 -51.93 -0.39 0.07 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.23 7.35 -51.93 -0.38 0.85 16 36 H 0.43 3.19 8.24 -40.82 -0.34 2.86 16 37 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 330.22 15.07 4.98 4.98 Total: -1.00 -31.32 330.22 -6.51 -37.82 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.56 Total: 6.32 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.00 Total: -6.30 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.37 Total: -50.91 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.28 Total: -7.95 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.32 -6.51 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579489592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.805 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds