Wall clock time and date at job start Tue Mar 31 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47395 * 2 1 4 4 H 1.08998 * 109.46987 * 180.45997 * 3 2 1 5 5 C 1.50696 * 109.47156 * 60.45998 * 3 2 1 6 6 H 1.08003 * 119.99517 * 240.00126 * 5 3 2 7 7 C 1.37877 * 120.00535 * 59.99965 * 5 3 2 8 8 N 1.31502 * 120.00388 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99626 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.46917 * 270.00121 * 9 7 5 11 11 H 1.48500 * 109.47130 * 30.00121 * 9 7 5 12 12 H 1.48500 * 109.46684 * 150.00118 * 9 7 5 13 13 N 1.46897 * 109.47059 * 300.45766 * 3 2 1 14 14 C 1.46900 * 111.00081 * 274.18919 * 13 3 2 15 15 C 1.53001 * 109.47451 * 174.60927 * 14 13 3 16 16 C 1.50697 * 109.47297 * 180.02562 * 15 14 13 17 17 O 1.21681 * 120.00057 * 359.97438 * 16 15 14 18 18 N 1.32487 * 120.00257 * 180.02562 * 16 15 14 19 19 C 1.34125 * 120.00565 * 179.97438 * 18 16 15 20 20 C 1.41323 * 127.15635 * 180.02562 * 19 18 16 21 21 C 1.35740 * 104.20758 * 179.97438 * 20 19 18 22 22 C 1.50695 * 126.27610 * 180.02562 * 21 20 19 23 23 O 1.33499 * 107.44044 * 0.02562 * 21 20 19 24 24 N 1.20972 * 112.08862 * 359.73607 * 23 21 20 25 25 H 0.96994 * 124.71689 * 180.26908 * 24 23 21 26 26 H 1.08993 * 109.47162 * 181.76127 * 1 2 3 27 27 H 1.08997 * 109.46886 * 301.76760 * 1 2 3 28 28 H 1.09003 * 109.46861 * 61.76618 * 1 2 3 29 29 H 1.09003 * 109.47143 * 239.99599 * 2 1 3 30 30 H 1.09001 * 109.47091 * 119.99929 * 2 1 3 31 31 H 0.97004 * 120.00665 * 180.02562 * 8 7 5 32 32 H 1.00893 * 111.00098 * 150.23492 * 13 3 2 33 33 H 1.09004 * 109.47529 * 294.61294 * 14 13 3 34 34 H 1.09005 * 109.47354 * 54.60998 * 14 13 3 35 35 H 1.09002 * 109.46724 * 300.00236 * 15 14 13 36 36 H 1.08991 * 109.46811 * 59.99497 * 15 14 13 37 37 H 1.08001 * 127.89962 * 359.93808 * 20 19 18 38 38 H 1.09003 * 109.46798 * 90.00433 * 22 21 20 39 39 H 1.09001 * 109.46858 * 209.99603 * 22 21 20 40 40 H 1.08999 * 109.47648 * 330.00262 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4424 -0.0082 5 6 1.5471 2.1496 1.2361 6 1 0.9255 3.0280 1.1440 7 6 1.8896 1.6753 2.4846 8 7 1.4590 2.2921 3.5632 9 14 2.9653 0.1564 2.6438 10 1 2.1075 -1.0548 2.6922 11 1 3.8771 0.0708 1.4749 12 1 3.7664 0.2458 3.8910 13 7 1.5414 2.1382 -1.1938 14 6 2.4268 1.9110 -2.3438 15 6 1.8078 2.5362 -3.5955 16 6 2.7158 2.3026 -4.7753 17 8 3.7594 1.6943 -4.6288 18 7 2.3784 2.7605 -5.9719 19 6 3.1868 2.5531 -7.0219 20 6 2.9782 2.9717 -8.3555 21 6 4.0716 2.5202 -9.0212 22 6 4.3573 2.6975 -10.4902 23 8 4.8472 1.8903 -8.1359 24 7 4.3722 1.9047 -7.0235 25 1 4.7840 1.5046 -6.2417 26 1 -0.3633 -1.0271 0.0316 27 1 -0.3633 0.5410 0.8737 28 1 -0.3633 0.4862 -0.9054 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7002 1.9586 4.4416 32 1 1.4259 3.1245 -1.0157 33 1 3.3973 2.3685 -2.1512 34 1 2.5545 0.8395 -2.4981 35 1 0.8374 2.0787 -3.7881 36 1 1.6801 3.6076 -3.4413 37 1 2.1401 3.5240 -8.7541 38 1 4.9132 3.6226 -10.6430 39 1 4.9482 1.8551 -10.8496 40 1 3.4174 2.7433 -11.0403 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580841624.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:40 Heat of formation + Delta-G solvation = 34.067539 kcal Electronic energy + Delta-G solvation = -21523.912676 eV Core-core repulsion = 18149.608313 eV Total energy + Delta-G solvation = -3374.304363 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.58950 -40.76978 -38.43904 -36.35595 -35.36437 -34.90761 -33.60681 -32.57732 -30.79289 -29.60760 -28.34144 -25.11751 -24.90974 -24.28656 -22.58816 -21.44506 -21.17783 -19.49049 -19.29796 -18.60326 -17.61591 -17.49028 -16.73104 -16.48493 -15.82509 -15.64835 -15.26094 -15.11833 -14.84642 -14.76493 -14.48701 -14.20997 -14.02965 -14.00745 -13.05060 -13.02542 -12.92661 -12.76128 -12.59105 -12.46516 -12.12446 -12.02122 -11.78065 -11.67357 -11.27021 -10.96624 -10.93177 -10.71259 -10.43021 -9.31174 -9.17891 -8.31654 -6.33309 -0.36287 0.79220 0.89151 1.26672 1.31033 1.40741 2.26024 2.28852 2.40961 2.74776 3.03686 3.40689 3.70587 3.84194 4.06293 4.15864 4.27647 4.34016 4.43949 4.60350 4.69798 4.71723 4.73668 4.78014 4.87105 4.93461 4.98380 5.08396 5.16066 5.23891 5.33207 5.35356 5.43914 5.60949 5.74786 5.97525 6.22901 6.48846 6.61487 6.70514 6.81778 7.31746 7.40181 8.84485 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.041617 B = 0.002872 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.645461 B = 9747.511809 C = 9923.482342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.115 4.115 3 C 0.189 3.811 4 H -0.016 1.016 5 C -0.508 4.508 6 H 0.047 0.953 7 C 0.022 3.978 8 N -0.942 5.942 9 Si 0.940 3.060 10 H -0.263 1.263 11 H -0.262 1.262 12 H -0.295 1.295 13 N -0.670 5.670 14 C 0.082 3.918 15 C -0.100 4.100 16 C 0.481 3.519 17 O -0.630 6.630 18 N -0.658 5.658 19 C 0.393 3.607 20 C -0.251 4.251 21 C 0.105 3.895 22 C -0.080 4.080 23 O 0.006 5.994 24 N -0.508 5.508 25 H 0.471 0.529 26 H 0.047 0.953 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.032 0.968 31 H 0.266 0.734 32 H 0.339 0.661 33 H 0.009 0.991 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.217 0.783 38 H 0.122 0.878 39 H 0.105 0.895 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.483 -0.172 -34.336 34.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.153 4.153 3 C 0.079 3.921 4 H 0.001 0.999 5 C -0.546 4.546 6 H 0.065 0.935 7 C -0.176 4.176 8 N -0.582 5.582 9 Si 0.768 3.232 10 H -0.189 1.189 11 H -0.187 1.187 12 H -0.223 1.223 13 N -0.301 5.301 14 C -0.048 4.048 15 C -0.140 4.140 16 C 0.270 3.730 17 O -0.517 6.517 18 N -0.425 5.425 19 C 0.147 3.853 20 C -0.274 4.274 21 C 0.046 3.954 22 C -0.137 4.137 23 O -0.007 6.007 24 N -0.179 5.179 25 H 0.335 0.665 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.234 0.766 38 H 0.140 0.860 39 H 0.123 0.877 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.315 -0.891 -34.037 34.629 hybrid contribution 1.830 -0.452 1.884 2.665 sum 8.145 -1.343 -32.153 33.196 Atomic orbital electron populations 1.21364 0.94425 0.99528 1.02012 1.21728 0.98406 0.96968 0.98198 1.19407 0.91852 0.92420 0.88431 0.99857 1.21213 1.31096 1.12253 0.90051 0.93470 1.25608 0.96895 0.99654 0.95470 1.70004 1.47367 1.42410 0.98431 0.85976 0.79543 0.80827 0.76846 1.18932 1.18686 1.22309 1.60421 1.49094 1.16124 1.04461 1.21563 0.92953 0.99893 0.90431 1.21056 0.99283 1.03327 0.90301 1.21625 0.84943 0.76681 0.89762 1.90339 1.28375 1.44807 1.88130 1.70050 1.32580 1.40886 0.98958 1.22402 0.80760 0.84793 0.97362 1.22099 1.04674 1.12455 0.88191 1.25066 0.87409 0.88167 0.94791 1.21024 1.07283 1.06239 0.79120 1.83989 1.42517 1.65612 1.08547 1.44546 1.20195 1.51520 1.01645 0.66535 0.93427 0.94384 0.91739 0.93185 0.94996 0.92465 0.84360 0.97290 0.92485 0.87579 0.88222 0.76619 0.85982 0.87656 0.84984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.52 71.98 0.69 -4.37 16 2 C -0.12 -5.37 5.28 30.59 0.16 -5.20 16 3 C 0.19 9.52 1.89 44.17 0.08 9.61 16 4 H -0.02 -0.86 6.90 -2.39 -0.02 -0.88 16 5 C -0.51 -29.65 7.90 25.60 0.20 -29.45 16 6 H 0.05 2.99 7.85 -2.91 -0.02 2.97 16 7 C 0.02 1.30 5.45 84.66 0.46 1.77 16 8 N -0.94 -59.76 13.96 21.45 0.30 -59.46 16 9 Si 0.94 47.51 24.38 68.60 1.67 49.18 16 10 H -0.26 -12.68 6.86 99.48 0.68 -11.99 16 11 H -0.26 -12.88 6.53 99.48 0.65 -12.23 16 12 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 13 N -0.67 -29.40 5.52 -495.45 -2.74 -32.14 16 14 C 0.08 3.27 4.74 86.30 0.41 3.68 16 15 C -0.10 -3.39 6.08 29.85 0.18 -3.21 16 16 C 0.48 16.78 7.70 88.01 0.68 17.46 16 17 O -0.63 -23.82 13.39 -4.29 -0.06 -23.88 16 18 N -0.66 -20.05 10.52 -311.12 -3.27 -23.32 16 19 C 0.39 9.11 7.77 134.36 1.04 10.16 16 20 C -0.25 -3.03 11.07 22.45 0.25 -2.79 16 21 C 0.11 0.71 7.43 25.10 0.19 0.89 16 22 C -0.08 0.36 10.44 71.23 0.74 1.10 16 23 O 0.01 0.08 11.14 76.55 0.85 0.93 16 24 N -0.51 -10.52 6.47 -55.46 -0.36 -10.88 16 25 H 0.47 11.39 6.28 -92.71 -0.58 10.81 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.04 1.85 7.17 -2.39 -0.02 1.83 16 28 H 0.06 2.67 7.65 -2.39 -0.02 2.65 16 29 H 0.05 2.14 7.45 -2.39 -0.02 2.12 16 30 H 0.03 1.54 3.26 -2.39 -0.01 1.53 16 31 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 32 H 0.34 14.81 8.26 -89.70 -0.74 14.07 16 33 H 0.01 0.38 8.10 -2.38 -0.02 0.36 16 34 H 0.06 2.38 7.35 -2.38 -0.02 2.36 16 35 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.22 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.12 -0.86 8.14 -2.39 -0.02 -0.88 16 39 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.13 -1.08 8.14 -2.39 -0.02 -1.10 16 Total: -1.00 -79.30 326.65 1.15 -78.15 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.33 Total: 21.79 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 5.08 Total: -0.36 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -6.07 Total: -125.80 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.80 Total: -22.95 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.67 Total: 49.18 kcal Total: -79.30 1.15 -78.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580841624.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.214 kcal (2) G-P(sol) polarization free energy of solvation -79.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds