Wall clock time and date at job start Tue Mar 31 2020 05:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47235 * 2 1 4 4 C 1.52999 * 109.46994 * 239.99741 * 2 1 3 5 5 C 1.50702 * 109.46907 * 119.99892 * 2 1 3 6 6 N 1.31044 * 126.45911 * 59.99743 * 5 2 1 7 7 C 1.35027 * 105.58919 * 180.02562 * 6 5 2 8 8 N 1.38838 * 126.38662 * 180.02562 * 7 6 5 9 9 C 1.48538 * 110.99993 * 297.39623 * 8 7 6 10 10 C 1.54933 * 103.22579 * 200.28409 * 9 8 7 11 11 C 1.54593 * 102.92591 * 37.41127 * 10 9 8 12 12 O 1.42907 * 110.31132 * 219.12904 * 11 10 9 13 13 C 1.50704 * 110.30910 * 96.96175 * 11 10 9 14 14 H 1.07998 * 119.99513 * 2.82953 * 13 11 10 15 15 C 1.37879 * 119.99722 * 182.83380 * 13 11 10 16 16 N 1.31516 * 120.00297 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99655 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47286 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47007 * 119.99684 * 17 15 13 20 20 H 1.48495 * 109.47163 * 239.99916 * 17 15 13 21 21 C 1.47899 * 110.99897 * 179.97438 * 8 7 6 22 22 N 1.30631 * 107.22516 * 0.26252 * 7 6 5 23 23 O 1.21292 * 110.12618 * 359.54382 * 22 7 6 24 24 H 1.09001 * 109.47203 * 300.00333 * 1 2 3 25 25 H 1.09001 * 109.47153 * 60.00209 * 1 2 3 26 26 H 1.08996 * 109.47556 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47004 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46879 * 299.99959 * 3 2 1 29 29 H 1.09001 * 109.47297 * 59.99725 * 3 2 1 30 30 H 1.09001 * 109.47288 * 300.00051 * 4 2 1 31 31 H 1.09001 * 109.47130 * 60.00035 * 4 2 1 32 32 H 1.08997 * 109.47270 * 180.02562 * 4 2 1 33 33 H 1.09007 * 110.66246 * 318.71470 * 9 8 7 34 34 H 1.08993 * 110.66671 * 81.67621 * 9 8 7 35 35 H 1.09007 * 110.72333 * 279.05054 * 10 9 8 36 36 H 1.09004 * 110.72411 * 155.77248 * 10 9 8 37 37 H 0.96696 * 113.99922 * 177.16938 * 12 11 10 38 38 H 0.96999 * 119.99917 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.91646 * 26.49143 * 21 8 7 40 40 H 1.08998 * 109.92144 * 265.19534 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.7950 -1.9558 1.5621 7 6 2.4418 -2.1495 2.7314 8 7 2.4772 -3.3258 3.4680 9 6 1.1173 -3.7066 3.9286 10 6 1.3996 -4.6657 5.1122 11 6 2.6357 -4.0280 5.7869 12 8 3.5438 -5.0432 6.2193 13 6 2.2121 -3.1724 6.9529 14 1 1.1701 -3.1171 7.2316 15 6 3.1547 -2.4604 7.6639 16 7 4.4236 -2.5282 7.3248 17 14 2.6295 -1.3994 9.1088 18 1 1.1578 -1.4944 9.2837 19 1 3.3057 -1.8737 10.3429 20 1 3.0074 0.0130 8.8490 21 6 3.2869 -3.1591 4.6944 22 7 3.0238 -1.0223 3.0430 23 8 2.8033 -0.1890 2.1896 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6766 -0.2075 -2.1392 32 1 3.1299 -0.7217 -1.2490 33 1 0.5663 -2.8292 4.2675 34 1 0.5723 -4.2193 3.1362 35 1 1.6316 -5.6674 4.7501 36 1 0.5541 -4.6892 5.7998 37 1 4.3587 -4.7008 6.6115 38 1 5.0868 -2.0276 7.8252 39 1 3.2845 -2.1132 5.0015 40 1 4.3084 -3.4934 4.5133 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591974047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:30 Heat of formation + Delta-G solvation = 0.445570 kcal Electronic energy + Delta-G solvation = -23062.379530 eV Core-core repulsion = 19686.617209 eV Total energy + Delta-G solvation = -3375.762321 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.59198 -40.58086 -38.37318 -37.41903 -35.63357 -34.28588 -32.98449 -31.07075 -29.51379 -28.24650 -28.22616 -27.01735 -25.26356 -24.54222 -22.76356 -21.49110 -20.65002 -19.30958 -19.18046 -18.50434 -17.34349 -17.10152 -16.61779 -16.43785 -15.81741 -15.14516 -15.01579 -14.98490 -14.61050 -14.08181 -13.86193 -13.51043 -13.43230 -13.32440 -13.01162 -12.97290 -12.86584 -12.66522 -12.61301 -12.48497 -12.43379 -12.31656 -12.24533 -12.09952 -11.97660 -11.87902 -11.25130 -11.12174 -10.74420 -10.39044 -9.74789 -8.32608 -6.49205 0.17846 1.10586 1.33414 1.35990 1.46765 1.85607 2.05539 2.31429 2.92964 2.95033 3.39496 3.78077 3.84022 3.86305 3.87345 3.98882 4.12613 4.22730 4.43635 4.54996 4.69955 4.72500 4.76272 4.82994 4.84793 4.90923 4.95756 4.96094 5.03578 5.04334 5.18054 5.23909 5.28576 5.34697 5.38567 5.42721 5.64218 5.85002 6.03576 6.58504 7.21729 7.25727 7.31644 8.73759 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022756 B = 0.005012 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.149684 B = 5585.200550 C = 6150.014392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.030 3.970 3 C -0.148 4.148 4 C -0.137 4.137 5 C 0.195 3.805 6 N -0.489 5.489 7 C 0.333 3.667 8 N -0.437 5.437 9 C 0.068 3.932 10 C -0.103 4.103 11 C 0.232 3.768 12 O -0.590 6.590 13 C -0.561 4.561 14 H 0.063 0.937 15 C 0.028 3.972 16 N -0.912 5.912 17 Si 0.960 3.040 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.283 1.283 21 C 0.059 3.941 22 N -0.441 5.441 23 O 0.073 5.927 24 H 0.054 0.946 25 H 0.111 0.889 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.376 0.624 38 H 0.271 0.729 39 H 0.052 0.948 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.460 7.734 -16.432 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.028 3.972 3 C -0.205 4.205 4 C -0.194 4.194 5 C -0.027 4.027 6 N -0.225 5.225 7 C -0.029 4.029 8 N -0.164 5.164 9 C -0.058 4.058 10 C -0.141 4.141 11 C 0.192 3.808 12 O -0.398 6.398 13 C -0.599 4.599 14 H 0.081 0.919 15 C -0.173 4.173 16 N -0.551 5.551 17 Si 0.785 3.215 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.209 1.209 21 C -0.068 4.068 22 N -0.158 5.158 23 O 0.019 5.981 24 H 0.073 0.927 25 H 0.129 0.871 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.232 6.693 -16.260 19.013 hybrid contribution 0.649 1.310 1.781 2.305 sum -6.583 8.004 -14.479 17.805 Atomic orbital electron populations 1.21941 0.89979 1.03267 1.04281 1.19671 0.97655 0.95431 0.84435 1.21996 1.01955 0.91822 1.04729 1.21936 1.01320 1.00790 0.95378 1.29856 0.89754 0.88317 0.94726 1.71746 1.24491 1.15518 1.10735 1.24316 0.95334 0.90445 0.92761 1.61636 1.13612 1.20641 1.20474 1.23151 0.86654 0.98310 0.97637 1.22479 0.97614 0.98433 0.95541 1.19643 0.86294 0.84719 0.90168 1.86142 1.34085 1.37163 1.82397 1.21964 0.94573 1.28216 1.15115 0.91923 1.25774 0.94943 0.96911 0.99695 1.69770 1.01393 1.42742 1.41203 0.85468 0.78812 0.78061 0.79121 1.19048 1.19822 1.20889 1.23426 0.95273 1.01497 0.86654 1.75132 1.27992 1.00443 1.12219 1.85225 1.52293 1.35297 1.25254 0.92710 0.87089 0.92376 0.92015 0.87238 0.92090 0.92474 0.87082 0.92693 0.93901 0.86996 0.90385 0.89525 0.77484 0.91971 0.92976 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.46 71.98 0.61 -1.41 16 2 C 0.03 0.55 0.99 -52.93 -0.05 0.50 16 3 C -0.15 -1.99 8.06 71.98 0.58 -1.41 16 4 C -0.14 -2.02 8.46 71.98 0.61 -1.41 16 5 C 0.19 5.89 6.59 88.36 0.58 6.47 16 6 N -0.49 -17.90 11.57 -311.43 -3.60 -21.50 16 7 C 0.33 14.56 7.25 260.92 1.89 16.46 16 8 N -0.44 -20.06 5.36 -702.90 -3.77 -23.83 16 9 C 0.07 2.76 6.50 86.65 0.56 3.33 16 10 C -0.10 -4.43 6.34 31.80 0.20 -4.23 16 11 C 0.23 12.04 0.99 -10.65 -0.01 12.03 16 12 O -0.59 -31.98 12.93 -148.98 -1.93 -33.90 16 13 C -0.56 -30.77 8.09 25.60 0.21 -30.57 16 14 H 0.06 3.37 7.51 -2.91 -0.02 3.35 16 15 C 0.03 1.51 5.02 84.65 0.42 1.94 16 16 N -0.91 -50.83 10.82 21.45 0.23 -50.60 16 17 Si 0.96 43.35 29.54 68.60 2.03 45.37 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 C 0.06 3.08 5.05 86.46 0.44 3.51 16 22 N -0.44 -19.80 10.66 -66.68 -0.71 -20.51 16 23 O 0.07 2.67 10.75 74.76 0.80 3.47 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.04 1.78 8.00 -2.38 -0.02 1.76 16 34 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 35 H 0.08 3.20 8.08 -2.38 -0.02 3.18 16 36 H 0.09 3.50 7.65 -2.38 -0.02 3.49 16 37 H 0.38 20.78 7.33 -74.06 -0.54 20.23 16 38 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 39 H 0.05 2.99 5.92 -2.39 -0.01 2.98 16 40 H 0.05 2.61 7.96 -2.39 -0.02 2.59 16 Total: -1.00 -67.24 326.94 -0.40 -67.64 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.50 Total: 28.67 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 6.04 Total: 5.19 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -7.85 Total: -116.44 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -1.12 Total: -30.43 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -67.24 -0.40 -67.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.086 kcal (2) G-P(sol) polarization free energy of solvation -67.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds