Wall clock time and date at job start Tue Mar 31 2020 05:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50692 * 109.47465 * 2 1 4 4 N 1.29950 * 126.28575 * 269.69115 * 3 2 1 5 5 O 1.21302 * 110.25121 * 179.84330 * 4 3 2 6 6 C 1.33645 * 109.81023 * 0.42029 * 5 4 3 7 7 C 1.50705 * 126.55211 * 179.72041 * 6 5 4 8 8 H 1.08995 * 109.46892 * 195.02376 * 7 6 5 9 9 C 1.53004 * 109.46763 * 75.02546 * 7 6 5 10 10 N 1.46896 * 109.47075 * 315.02752 * 7 6 5 11 11 C 1.47850 * 110.99709 * 300.84407 * 10 7 6 12 12 C 1.54907 * 104.79453 * 213.63659 * 11 10 7 13 13 C 1.55140 * 101.65263 * 37.06914 * 12 11 10 14 14 O 1.42901 * 110.70934 * 82.73064 * 13 12 11 15 15 C 1.50709 * 110.70753 * 205.96548 * 13 12 11 16 16 H 1.08000 * 119.99719 * 20.80046 * 15 13 12 17 17 C 1.37875 * 119.99739 * 200.80289 * 15 13 12 18 18 N 1.31522 * 119.99720 * 173.62229 * 17 15 13 19 19 Si 1.86794 * 120.00417 * 353.62036 * 17 15 13 20 20 H 1.48502 * 109.47129 * 86.32028 * 19 17 15 21 21 H 1.48505 * 109.47388 * 206.32189 * 19 17 15 22 22 H 1.48497 * 109.47116 * 326.32277 * 19 17 15 23 23 C 1.47443 * 111.00211 * 180.02562 * 10 7 6 24 24 N 1.31129 * 106.89634 * 359.74144 * 6 5 4 25 25 H 1.09000 * 109.47279 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47492 * 300.00156 * 1 2 3 27 27 H 1.09005 * 109.47122 * 60.00140 * 1 2 3 28 28 H 1.09006 * 109.47136 * 239.99648 * 2 1 3 29 29 H 1.09005 * 109.47122 * 119.99860 * 2 1 3 30 30 H 1.09003 * 109.47004 * 299.99598 * 9 7 6 31 31 H 1.08995 * 109.47147 * 60.00439 * 9 7 6 32 32 H 1.09003 * 109.46297 * 180.02562 * 9 7 6 33 33 H 1.09003 * 110.37532 * 332.46179 * 11 10 7 34 34 H 1.08997 * 110.37636 * 94.80774 * 11 10 7 35 35 H 1.09000 * 110.99538 * 278.98074 * 12 11 10 36 36 H 1.08999 * 111.02714 * 155.17222 * 12 11 10 37 37 H 0.96697 * 114.00093 * 61.07665 * 14 13 12 38 38 H 0.96993 * 119.99964 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.88653 * 242.66403 * 23 10 7 40 40 H 1.08998 * 109.88600 * 3.84762 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2941 2.1439 -1.0475 5 8 2.6781 3.2446 -0.7124 6 6 2.7071 3.3278 0.6211 7 6 3.1301 4.5222 1.4369 8 1 3.3035 4.2148 2.4682 9 6 2.0272 5.5819 1.3992 10 7 4.3676 5.0832 0.8785 11 6 5.4525 4.0788 0.8801 12 6 6.7459 4.8941 1.1298 13 6 6.2503 5.9681 2.1336 14 8 6.2436 5.4501 3.4655 15 6 7.0998 7.2100 2.0477 16 1 7.6856 7.4033 1.1613 17 6 7.1290 8.0994 3.1009 18 7 7.9631 9.1161 3.0801 19 14 5.9839 7.8605 4.5572 20 1 6.6155 6.9416 5.5380 21 1 5.7247 9.1722 5.2036 22 1 4.7011 7.2779 4.0880 23 6 4.8129 6.2559 1.6533 24 7 2.2977 2.1712 1.0840 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8538 5.8893 0.3679 31 1 1.1090 5.1657 1.8136 32 1 2.3334 6.4460 1.9889 33 1 5.2992 3.3558 1.6812 34 1 5.5030 3.5731 -0.0842 35 1 7.1008 5.3553 0.2082 36 1 7.5210 4.2709 1.5758 37 1 7.1140 5.1763 3.7854 38 1 7.9834 9.7419 3.8207 39 1 4.8043 7.1434 1.0206 40 1 4.1577 6.4037 2.5118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:03 Heat of formation + Delta-G solvation = -0.137723 kcal Electronic energy + Delta-G solvation = -22967.541657 eV Core-core repulsion = 19591.754043 eV Total energy + Delta-G solvation = -3375.787614 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.64738 -40.67441 -37.61478 -37.32368 -35.01024 -34.41947 -33.54999 -31.94968 -30.36041 -29.49991 -26.94608 -26.05840 -25.19998 -23.79750 -22.74031 -21.53768 -20.95196 -19.32867 -19.19721 -18.41281 -17.35314 -17.27056 -16.89753 -16.22805 -15.79621 -15.38822 -15.26494 -14.98839 -14.67301 -14.41251 -14.01105 -13.81652 -13.71560 -13.55030 -13.19799 -13.08083 -12.77469 -12.67971 -12.61918 -12.48699 -12.29539 -12.28155 -12.20220 -12.00494 -11.98258 -11.93246 -11.19209 -10.98781 -10.60016 -10.34319 -9.45233 -8.31384 -6.44013 0.03269 1.12385 1.50376 1.52355 1.70969 1.71505 2.35870 2.44934 2.86980 3.01756 3.13115 3.48502 3.68436 3.84804 3.99808 4.09261 4.19155 4.21099 4.23124 4.31309 4.36028 4.45236 4.56943 4.68483 4.78025 4.79456 4.86262 4.91297 4.95631 5.01439 5.04364 5.14004 5.22981 5.24117 5.38673 5.58830 5.79552 5.91879 6.10710 6.64098 6.99934 7.09158 7.34074 8.82098 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035070 B = 0.004389 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.216086 B = 6377.725535 C = 6565.884266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.033 4.033 3 C 0.168 3.832 4 N -0.408 5.408 5 O 0.077 5.923 6 C 0.209 3.791 7 C 0.167 3.833 8 H 0.088 0.912 9 C -0.144 4.144 10 N -0.523 5.523 11 C 0.049 3.951 12 C -0.134 4.134 13 C 0.203 3.797 14 O -0.569 6.569 15 C -0.544 4.544 16 H 0.041 0.959 17 C 0.025 3.975 18 N -0.939 5.939 19 Si 0.998 3.002 20 H -0.283 1.283 21 H -0.334 1.334 22 H -0.252 1.252 23 C 0.061 3.939 24 N -0.499 5.499 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.382 0.618 38 H 0.266 0.734 39 H 0.086 0.914 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.914 -16.180 -3.030 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.105 4.105 4 N -0.119 5.119 5 O 0.023 5.977 6 C -0.012 4.012 7 C 0.056 3.944 8 H 0.106 0.894 9 C -0.202 4.202 10 N -0.249 5.249 11 C -0.078 4.078 12 C -0.173 4.173 13 C 0.163 3.837 14 O -0.378 6.378 15 C -0.582 4.582 16 H 0.060 0.940 17 C -0.175 4.175 18 N -0.577 5.577 19 Si 0.830 3.170 20 H -0.210 1.210 21 H -0.266 1.266 22 H -0.177 1.177 23 C -0.066 4.066 24 N -0.233 5.233 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.231 0.769 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.791 -16.358 -4.062 22.425 hybrid contribution 1.012 0.381 1.403 1.771 sum -13.779 -15.978 -2.659 21.266 Atomic orbital electron populations 1.21707 0.92185 1.04172 1.01846 1.20179 0.97644 0.83531 1.05856 1.26603 0.99268 1.01650 0.82928 1.74636 1.19067 0.93328 1.24832 1.85327 1.60671 1.26819 1.24897 1.28740 0.94427 0.96069 0.81975 1.20418 0.93017 0.87673 0.93300 0.89439 1.21967 0.96301 0.97485 1.04487 1.63835 1.02683 1.06896 1.51477 1.22976 0.90652 0.93771 1.00418 1.23144 0.96569 0.97270 1.00282 1.20258 0.93020 0.90677 0.79771 1.86079 1.36630 1.83094 1.32031 1.21480 1.27567 1.06203 1.02951 0.94035 1.25876 0.95983 0.93968 1.01667 1.70096 1.37758 1.16176 1.33685 0.84949 0.80690 0.73268 0.78070 1.20954 1.26596 1.17706 1.23148 0.95084 0.92520 0.95812 1.71922 1.19370 1.01972 1.30083 0.88463 0.92822 0.93143 0.87794 0.87441 0.90515 0.89886 0.90042 0.93403 0.90722 0.91348 0.90136 0.76873 0.92533 0.89627 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.89 71.98 0.71 -1.20 16 2 C -0.03 -0.55 6.56 29.84 0.20 -0.36 16 3 C 0.17 4.35 7.47 138.46 1.03 5.38 16 4 N -0.41 -11.96 12.16 -60.30 -0.73 -12.69 16 5 O 0.08 2.37 11.31 74.81 0.85 3.21 16 6 C 0.21 6.03 6.36 88.38 0.56 6.59 16 7 C 0.17 4.74 2.20 44.17 0.10 4.84 16 8 H 0.09 2.57 8.10 -2.39 -0.02 2.55 16 9 C -0.14 -3.45 9.04 71.98 0.65 -2.80 16 10 N -0.52 -17.14 5.02 -864.85 -4.34 -21.49 16 11 C 0.05 1.58 5.83 86.77 0.51 2.09 16 12 C -0.13 -4.84 6.23 31.98 0.20 -4.64 16 13 C 0.20 8.46 0.68 -10.37 -0.01 8.46 16 14 O -0.57 -22.48 8.90 -148.98 -1.33 -23.80 16 15 C -0.54 -28.55 8.70 25.60 0.22 -28.33 16 16 H 0.04 2.45 7.98 -2.91 -0.02 2.43 16 17 C 0.02 1.35 5.46 84.65 0.46 1.81 16 18 N -0.94 -56.29 13.96 21.45 0.30 -55.99 16 19 Si 1.00 46.03 24.91 68.60 1.71 47.74 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.33 -16.00 7.11 99.48 0.71 -15.30 16 22 H -0.25 -10.80 5.19 99.48 0.52 -10.29 16 23 C 0.06 2.33 4.92 86.63 0.43 2.76 16 24 N -0.50 -14.20 11.55 -303.18 -3.50 -17.70 16 25 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 1.99 6.50 -2.39 -0.02 1.98 16 33 H 0.05 1.51 7.77 -2.39 -0.02 1.49 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.07 2.61 7.98 -2.39 -0.02 2.59 16 36 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.38 13.36 9.07 -74.06 -0.67 12.69 16 38 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.09 3.49 7.81 -2.39 -0.02 3.47 16 40 H 0.06 2.44 4.51 -2.39 -0.01 2.43 16 Total: -1.00 -64.27 321.86 -1.80 -66.07 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.19 Total: 20.06 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 5.06 Total: -5.41 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -8.28 Total: -107.87 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.48 Total: -20.59 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.71 Total: 47.74 kcal Total: -64.27 -1.80 -66.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.933 kcal (2) G-P(sol) polarization free energy of solvation -64.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds