Wall clock time and date at job start Tue Mar 31 2020 05:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47488 * 2 1 4 4 N 1.29950 * 126.29039 * 89.97478 * 3 2 1 5 5 O 1.21299 * 110.25662 * 180.02562 * 4 3 2 6 6 C 1.33649 * 109.80583 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.54861 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47318 * 165.02464 * 7 6 5 9 9 C 1.53004 * 109.47321 * 285.02841 * 7 6 5 10 10 N 1.46901 * 109.47021 * 45.02379 * 7 6 5 11 11 C 1.47850 * 111.00031 * 181.69374 * 10 7 6 12 12 C 1.54903 * 104.79691 * 213.64065 * 11 10 7 13 13 C 1.55140 * 101.65409 * 37.06923 * 12 11 10 14 14 O 1.42908 * 110.70645 * 82.72919 * 13 12 11 15 15 C 1.50705 * 110.70765 * 205.96104 * 13 12 11 16 16 H 1.07998 * 119.99216 * 113.59728 * 15 13 12 17 17 C 1.37873 * 119.99996 * 293.60003 * 15 13 12 18 18 N 1.31514 * 120.00250 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99754 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46928 * 60.00364 * 19 17 15 21 21 H 1.48501 * 109.46935 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47157 * 300.00368 * 19 17 15 23 23 C 1.47450 * 110.99931 * 60.85690 * 10 7 6 24 24 N 1.31121 * 106.89666 * 0.23299 * 6 5 4 25 25 H 1.09002 * 109.46682 * 60.00248 * 1 2 3 26 26 H 1.08996 * 109.47358 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46986 * 300.00289 * 1 2 3 28 28 H 1.08997 * 109.47492 * 239.99755 * 2 1 3 29 29 H 1.09006 * 109.46870 * 120.00221 * 2 1 3 30 30 H 1.08996 * 109.47113 * 305.64341 * 9 7 6 31 31 H 1.08998 * 109.47226 * 185.64014 * 9 7 6 32 32 H 1.09006 * 109.47079 * 65.64138 * 9 7 6 33 33 H 1.09001 * 110.37089 * 332.46919 * 11 10 7 34 34 H 1.08996 * 110.37310 * 94.80936 * 11 10 7 35 35 H 1.09003 * 110.99168 * 278.97706 * 12 11 10 36 36 H 1.09003 * 110.99059 * 155.15881 * 12 11 10 37 37 H 0.96701 * 113.99540 * 66.39807 * 14 13 12 38 38 H 0.96994 * 120.00049 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.88563 * 242.66276 * 23 10 7 40 40 H 1.09003 * 109.88558 * 3.84456 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2884 2.1460 1.0474 5 8 2.6767 3.2452 0.7124 6 6 2.7067 3.3279 -0.6212 7 6 3.1286 4.5227 -1.4370 8 1 3.3025 4.2154 -2.4682 9 6 2.0246 5.5814 -1.3996 10 7 4.3653 5.0851 -0.8784 11 6 4.7884 6.2857 -1.6304 12 6 6.3365 6.2524 -1.5905 13 6 6.6204 4.7320 -1.7112 14 8 6.5830 4.3179 -3.0784 15 6 7.9466 4.3861 -1.0843 16 1 7.9804 3.7700 -0.1980 17 6 9.1164 4.8564 -1.6423 18 7 9.0750 5.6071 -2.7213 19 14 10.7601 4.4282 -0.8648 20 1 10.9343 2.9536 -0.8560 21 1 11.8561 5.0519 -1.6491 22 1 10.7965 4.9394 0.5290 23 6 5.4595 4.0974 -0.9170 24 7 2.2938 2.1727 -1.0840 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.0828 5.1358 -1.7199 31 1 2.2847 6.4014 -2.0688 32 1 1.9197 5.9611 -0.3832 33 1 4.4340 6.2330 -2.6598 34 1 4.4156 7.1880 -1.1456 35 1 6.7114 6.6458 -0.6456 36 1 6.7606 6.7969 -2.4342 37 1 7.2920 4.6890 -3.6213 38 1 9.8979 5.9382 -3.1136 39 1 5.7864 3.8664 0.0968 40 1 5.1216 3.1891 -1.4160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:10 Heat of formation + Delta-G solvation = 17.203228 kcal Electronic energy + Delta-G solvation = -22920.827465 eV Core-core repulsion = 19545.791811 eV Total energy + Delta-G solvation = -3375.035654 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.35892 -38.84347 -36.21342 -35.61148 -33.60427 -32.14569 -32.09266 -30.54844 -28.64737 -27.82327 -25.05069 -24.48646 -24.41942 -22.65010 -20.99088 -19.84330 -19.42416 -17.89855 -17.19979 -17.03728 -15.68591 -15.51022 -14.95440 -14.80537 -14.49049 -14.19831 -13.99935 -13.26964 -13.07846 -12.73187 -12.45785 -12.35992 -12.00410 -11.93708 -11.80277 -11.53034 -11.37923 -11.31848 -11.25395 -11.17389 -10.94716 -10.80814 -10.69887 -10.52594 -10.42266 -9.98603 -9.69578 -9.35477 -8.65775 -8.16305 -7.90850 -6.25273 -4.32146 1.34887 2.37251 3.03676 3.23344 3.27830 3.31493 3.62467 4.06604 4.28161 4.48691 4.83183 5.00534 5.01307 5.07784 5.09352 5.25318 5.41940 5.52830 5.59192 5.69033 5.75221 5.81645 5.86384 5.94723 5.99589 6.03664 6.11541 6.16724 6.19749 6.30725 6.42414 6.83839 6.95803 7.28770 7.41377 7.45990 7.51142 7.78056 8.07978 8.38128 8.68746 9.35617 9.47285 10.82174 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.004692 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.591892 B = 5966.454350 C = 6671.398367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.031 4.031 3 C 0.165 3.835 4 N -0.392 5.392 5 O 0.093 5.907 6 C 0.210 3.790 7 C 0.166 3.834 8 H 0.090 0.910 9 C -0.144 4.144 10 N -0.523 5.523 11 C 0.044 3.956 12 C -0.131 4.131 13 C 0.239 3.761 14 O -0.592 6.592 15 C -0.533 4.533 16 H 0.061 0.939 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.053 3.947 24 N -0.487 5.487 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.385 0.615 38 H 0.268 0.732 39 H 0.082 0.918 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.749 -2.772 2.004 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 C -0.108 4.108 4 N -0.100 5.100 5 O 0.035 5.965 6 C -0.011 4.011 7 C 0.055 3.945 8 H 0.107 0.893 9 C -0.202 4.202 10 N -0.249 5.249 11 C -0.082 4.082 12 C -0.170 4.170 13 C 0.199 3.801 14 O -0.402 6.402 15 C -0.572 4.572 16 H 0.080 0.920 17 C -0.130 4.130 18 N -0.540 5.540 19 Si 0.728 3.272 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.074 4.074 24 N -0.221 5.221 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.237 0.763 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.483 -3.470 3.117 15.215 hybrid contribution 1.763 -0.010 -0.656 1.881 sum -12.720 -3.481 2.461 13.415 Atomic orbital electron populations 1.21722 0.93531 1.02534 1.02569 1.19883 0.96564 0.85960 1.04578 1.25804 1.00849 1.00406 0.83781 1.74606 1.17909 0.93271 1.24185 1.85330 1.59981 1.26448 1.24731 1.28702 0.94266 0.96104 0.82000 1.20348 0.93329 0.87018 0.93843 0.89253 1.21898 0.96357 0.97963 1.03969 1.63863 1.02214 1.06983 1.51795 1.23094 0.98315 0.91555 0.95264 1.23197 0.90750 1.00829 1.02226 1.19652 0.91735 0.88526 0.80202 1.86078 1.56355 1.75383 1.22414 1.21550 0.90841 1.32420 1.12359 0.92033 1.24983 0.99499 0.93812 0.94740 1.69566 1.28695 1.34746 1.20944 0.86506 0.82456 0.78825 0.79374 1.20121 1.21115 1.20022 1.22941 0.90664 0.93301 1.00491 1.71881 1.18992 1.01785 1.29471 0.92045 0.91235 0.92427 0.88696 0.89235 0.91932 0.90414 0.90818 0.93791 0.91175 0.91477 0.90488 0.76324 0.92161 0.89964 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 37.16 0.37 -0.97 16 2 C -0.03 -0.35 6.56 -27.89 -0.18 -0.53 16 3 C 0.16 2.58 7.47 -156.37 -1.17 1.41 16 4 N -0.39 -6.70 12.16 30.90 0.38 -6.32 16 5 O 0.09 1.64 11.31 18.09 0.20 1.85 16 6 C 0.21 3.56 6.05 -13.06 -0.08 3.49 16 7 C 0.17 2.65 2.19 -68.86 -0.15 2.50 16 8 H 0.09 1.52 8.12 -51.93 -0.42 1.09 16 9 C -0.14 -1.76 8.92 37.16 0.33 -1.43 16 10 N -0.52 -9.59 5.02 -224.68 -1.13 -10.72 16 11 C 0.04 0.79 5.47 -2.30 -0.01 0.78 16 12 C -0.13 -2.87 5.66 -24.59 -0.14 -3.01 16 13 C 0.24 5.81 0.86 -89.95 -0.08 5.73 16 14 O -0.59 -15.10 13.09 -35.23 -0.46 -15.56 16 15 C -0.53 -14.19 8.21 -34.44 -0.28 -14.47 16 16 H 0.06 1.64 7.53 -52.49 -0.40 1.25 16 17 C 0.07 1.87 5.28 -17.82 -0.09 1.77 16 18 N -0.90 -23.51 10.69 55.43 0.59 -22.92 16 19 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 C 0.05 1.16 5.65 -2.84 -0.02 1.14 16 24 N -0.49 -8.31 11.55 -9.86 -0.11 -8.43 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.86 7.18 -51.93 -0.37 0.49 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.76 7.53 -51.93 -0.39 0.37 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.52 8.04 -51.93 -0.42 1.10 16 36 H 0.08 1.77 7.76 -51.93 -0.40 1.37 16 37 H 0.38 10.01 6.99 45.56 0.32 10.33 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.08 1.85 7.63 -51.93 -0.40 1.46 16 40 H 0.05 1.05 7.01 -51.93 -0.36 0.69 16 LS Contribution 328.14 15.07 4.95 4.95 Total: -1.00 -28.21 328.14 -7.47 -35.68 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.36 Total: 9.51 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.50 Total: -3.58 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.27 Total: -48.38 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.26 Total: -13.72 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.21 -7.47 -35.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.883 kcal (2) G-P(sol) polarization free energy of solvation -28.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds