Wall clock time and date at job start Tue Mar 31 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99964 * 2 1 4 4 C 1.52998 * 109.47240 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.47240 * 180.02562 * 4 3 2 6 6 C 1.34259 * 125.75004 * 125.26693 * 5 4 3 7 7 C 1.38047 * 107.41587 * 180.14702 * 6 5 4 8 8 C 1.47425 * 126.41668 * 179.87270 * 7 6 5 9 9 O 1.21603 * 120.00000 * 359.71376 * 8 7 6 10 10 N 1.34777 * 119.99743 * 179.71066 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72398 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46940 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00213 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00298 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99907 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47136 * 89.99860 * 18 16 14 20 20 H 1.48503 * 109.47098 * 209.99926 * 18 16 14 21 21 H 1.48504 * 109.46915 * 329.99781 * 18 16 14 22 22 C 1.41295 * 107.16763 * 359.61042 * 7 6 5 23 23 N 1.30447 * 108.02210 * 0.24100 * 22 7 6 24 24 H 1.08999 * 109.47301 * 299.99452 * 1 2 3 25 25 H 1.08995 * 109.47115 * 60.00090 * 1 2 3 26 26 H 1.09001 * 109.47007 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47101 * 60.00758 * 3 2 1 28 28 H 1.08998 * 109.47593 * 300.00183 * 3 2 1 29 29 H 1.09003 * 109.47295 * 60.00498 * 4 3 2 30 30 H 1.08995 * 109.47744 * 300.00429 * 4 3 2 31 31 H 1.08003 * 126.29424 * 0.02562 * 6 5 4 32 32 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 33 33 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 34 34 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 35 35 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 36 36 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 37 37 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 38 38 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 39 39 H 0.96997 * 120.00401 * 179.97438 * 17 16 14 40 40 H 1.08003 * 125.98888 * 180.20881 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5231 0.0013 6 6 5.0247 2.9836 0.8914 7 6 5.3262 4.2839 0.5393 8 6 6.2615 5.1850 1.2369 9 8 6.8503 4.8006 2.2290 10 7 6.4640 6.4348 0.7749 11 6 7.3888 7.3323 1.4716 12 6 7.4301 8.6816 0.7512 13 6 8.3954 9.6190 1.4792 14 6 8.4365 10.9478 0.7693 15 1 7.8340 11.1077 -0.1126 16 6 9.2433 11.9593 1.2457 17 7 9.2788 13.1190 0.6265 18 14 10.2860 11.6825 2.7707 19 1 11.6133 11.1486 2.3726 20 1 10.4653 12.9703 3.4882 21 1 9.6082 10.7085 3.6637 22 6 4.5753 4.5873 -0.6184 23 7 3.8695 3.5351 -0.9290 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 3.8574 0.6437 -0.8892 30 1 3.8568 0.6439 0.8907 31 1 5.4311 2.4378 1.7301 32 1 5.9941 6.7416 -0.0163 33 1 7.0500 7.4784 2.4974 34 1 8.3863 6.8930 1.4775 35 1 7.7688 8.5355 -0.2744 36 1 6.4325 9.1210 0.7454 37 1 8.0563 9.7650 2.5047 38 1 9.3931 9.1799 1.4855 39 1 9.8461 13.8307 0.9618 40 1 4.5836 5.5261 -1.1524 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601038722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:54 Heat of formation + Delta-G solvation = -17.350911 kcal Electronic energy + Delta-G solvation = -20521.089463 eV Core-core repulsion = 17144.555429 eV Total energy + Delta-G solvation = -3376.534034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66270 -39.08450 -38.47960 -35.45050 -34.36052 -33.23805 -31.48854 -30.71871 -29.66130 -27.31175 -26.65517 -24.10397 -23.45335 -22.10067 -21.01495 -20.58220 -19.72635 -18.14373 -17.08047 -16.85104 -16.65563 -15.99879 -15.73991 -15.48724 -15.38091 -14.97405 -14.51910 -14.19914 -13.98257 -13.66622 -13.40638 -13.09924 -12.67858 -12.58949 -12.23829 -11.98036 -11.91684 -11.88047 -11.29488 -11.04523 -10.87468 -10.32394 -10.16263 -9.94188 -9.93366 -9.76131 -9.56313 -9.20761 -9.06088 -8.69712 -8.53868 -6.04721 -4.03295 1.28146 1.81053 1.97146 3.19431 3.32741 3.40126 3.44668 3.45523 3.50893 4.06940 4.30600 4.46002 4.47666 4.50355 4.64934 4.77496 4.79236 4.93877 5.02037 5.07996 5.12875 5.24296 5.29477 5.45593 5.66119 5.70405 6.05350 6.12135 6.38005 6.40757 6.48525 6.50471 6.75120 6.83196 7.21253 7.25467 7.38916 7.72097 7.79710 8.42339 8.52293 8.99307 9.57639 11.08491 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.048918 B = 0.002234 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.244804 B =12530.068119 C =12854.736405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.130 3.870 7 C -0.287 4.287 8 C 0.589 3.411 9 O -0.555 6.555 10 N -0.721 5.721 11 C 0.116 3.884 12 C -0.114 4.114 13 C -0.012 4.012 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 C 0.086 3.914 23 N -0.298 5.298 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.189 0.811 32 H 0.398 0.602 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.014 0.986 39 H 0.263 0.737 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.996 -26.321 -1.776 30.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.144 5.144 6 C -0.021 4.021 7 C -0.302 4.302 8 C 0.376 3.624 9 O -0.435 6.435 10 N -0.371 5.371 11 C -0.007 4.007 12 C -0.152 4.152 13 C -0.050 4.050 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.103 4.103 23 N -0.117 5.117 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.206 0.794 32 H 0.232 0.768 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -16.300 -27.219 -1.878 31.782 hybrid contribution 0.738 0.796 0.905 1.413 sum -15.562 -26.424 -0.972 30.681 Atomic orbital electron populations 1.22790 0.79824 1.03174 1.00469 1.87775 1.20682 1.26855 1.95624 1.22649 0.92423 0.85419 1.02205 1.21486 0.92776 0.78656 1.05745 1.48312 1.32989 1.12069 1.21068 1.22998 0.90642 0.94342 0.94107 1.20373 1.10257 0.96312 1.03210 1.17222 0.80618 0.81252 0.83283 1.90765 1.50351 1.75850 1.26485 1.45921 1.46447 1.13112 1.31633 1.21644 0.92550 0.90030 0.96428 1.21710 1.01397 0.92436 0.99631 1.19507 0.94222 0.94994 0.96235 1.21107 1.26292 0.95379 1.13180 0.90994 1.25031 0.96563 0.95007 0.96913 1.69911 1.39941 1.03872 1.40504 0.86776 0.81059 0.77653 0.83815 1.20262 1.21406 1.18871 1.24160 0.93389 0.97833 0.94872 1.77157 1.24450 0.96860 1.13278 0.93736 0.93638 0.89115 0.92513 0.91392 0.88299 0.87274 0.79359 0.76778 0.91753 0.91736 0.92070 0.92067 0.96292 0.96724 0.92724 0.79043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.78 10.70 -35.23 -0.38 -3.15 16 3 C 0.05 0.33 6.11 37.16 0.23 0.56 16 4 C 0.13 0.83 6.86 -4.04 -0.03 0.80 16 5 N -0.36 -3.28 3.65 -60.80 -0.22 -3.50 16 6 C 0.13 1.27 11.25 -16.56 -0.19 1.08 16 7 C -0.29 -3.35 6.13 -105.07 -0.64 -3.99 16 8 C 0.59 8.65 7.81 -12.52 -0.10 8.55 16 9 O -0.56 -10.11 16.90 5.27 0.09 -10.02 16 10 N -0.72 -9.95 5.55 -61.38 -0.34 -10.29 16 11 C 0.12 1.92 5.67 -4.04 -0.02 1.90 16 12 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 13 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 14 C -0.52 -14.67 9.66 -34.44 -0.33 -15.01 16 15 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 18 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 22 C 0.09 0.86 11.50 -16.98 -0.20 0.67 16 23 N -0.30 -3.17 12.33 30.86 0.38 -2.79 16 24 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.11 0.45 8.06 -51.93 -0.42 0.03 16 31 H 0.19 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.40 4.36 7.43 -40.82 -0.30 4.06 16 33 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 38 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.19 1.38 7.50 -52.48 -0.39 0.99 16 LS Contribution 345.63 15.07 5.21 5.21 Total: -1.00 -35.18 345.63 -5.79 -40.97 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -6.12 Total: -1.56 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -0.52 Total: -4.97 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.59 Total: -43.56 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.29 Total: -13.17 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.18 -5.79 -40.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.621 kcal (2) G-P(sol) polarization free energy of solvation -35.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds