Wall clock time and date at job start Tue Mar 31 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99964 * 2 1 4 4 C 1.52998 * 109.47240 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.47240 * 180.02562 * 4 3 2 6 6 C 1.34259 * 125.75004 * 125.26693 * 5 4 3 7 7 C 1.38047 * 107.41587 * 180.14702 * 6 5 4 8 8 C 1.47425 * 126.41668 * 179.87270 * 7 6 5 9 9 O 1.21603 * 120.00000 * 359.71376 * 8 7 6 10 10 N 1.34777 * 119.99743 * 179.71066 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72398 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46940 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00213 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00298 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99907 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47136 * 89.99860 * 18 16 14 20 20 H 1.48503 * 109.47098 * 209.99926 * 18 16 14 21 21 H 1.48504 * 109.46915 * 329.99781 * 18 16 14 22 22 C 1.41295 * 107.16763 * 359.61042 * 7 6 5 23 23 N 1.30447 * 108.02210 * 0.24100 * 22 7 6 24 24 H 1.08999 * 109.47301 * 299.99452 * 1 2 3 25 25 H 1.08995 * 109.47115 * 60.00090 * 1 2 3 26 26 H 1.09001 * 109.47007 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47101 * 60.00758 * 3 2 1 28 28 H 1.08998 * 109.47593 * 300.00183 * 3 2 1 29 29 H 1.09003 * 109.47295 * 60.00498 * 4 3 2 30 30 H 1.08995 * 109.47744 * 300.00429 * 4 3 2 31 31 H 1.08003 * 126.29424 * 0.02562 * 6 5 4 32 32 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 33 33 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 34 34 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 35 35 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 36 36 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 37 37 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 38 38 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 39 39 H 0.96997 * 120.00401 * 179.97438 * 17 16 14 40 40 H 1.08003 * 125.98888 * 180.20881 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5231 0.0013 6 6 5.0247 2.9836 0.8914 7 6 5.3262 4.2839 0.5393 8 6 6.2615 5.1850 1.2369 9 8 6.8503 4.8006 2.2290 10 7 6.4640 6.4348 0.7749 11 6 7.3888 7.3323 1.4716 12 6 7.4301 8.6816 0.7512 13 6 8.3954 9.6190 1.4792 14 6 8.4365 10.9478 0.7693 15 1 7.8340 11.1077 -0.1126 16 6 9.2433 11.9593 1.2457 17 7 9.2788 13.1190 0.6265 18 14 10.2860 11.6825 2.7707 19 1 11.6133 11.1486 2.3726 20 1 10.4653 12.9703 3.4882 21 1 9.6082 10.7085 3.6637 22 6 4.5753 4.5873 -0.6184 23 7 3.8695 3.5351 -0.9290 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 3.8574 0.6437 -0.8892 30 1 3.8568 0.6439 0.8907 31 1 5.4311 2.4378 1.7301 32 1 5.9941 6.7416 -0.0163 33 1 7.0500 7.4784 2.4974 34 1 8.3863 6.8930 1.4775 35 1 7.7688 8.5355 -0.2744 36 1 6.4325 9.1210 0.7454 37 1 8.0563 9.7650 2.5047 38 1 9.3931 9.1799 1.4855 39 1 9.8461 13.8307 0.9618 40 1 4.5836 5.5261 -1.1524 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601038722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:54 Heat of formation + Delta-G solvation = -43.163298 kcal Electronic energy + Delta-G solvation = -20522.208773 eV Core-core repulsion = 17144.555429 eV Total energy + Delta-G solvation = -3377.653343 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.43425 -40.21440 -38.98624 -36.91372 -35.19854 -34.87660 -33.23965 -31.51388 -30.46812 -28.78838 -27.24209 -25.17181 -24.40084 -23.32011 -22.19685 -21.67223 -20.85896 -19.10979 -18.77054 -17.62435 -17.35207 -16.89728 -16.72513 -16.46464 -16.37255 -16.12377 -15.74765 -15.32878 -14.99050 -14.77570 -14.61819 -14.28740 -13.88779 -13.70687 -13.58100 -13.06453 -12.73998 -12.69948 -12.64977 -12.36649 -12.10631 -11.83657 -11.72448 -11.55382 -11.29617 -10.89442 -10.79062 -10.73743 -10.65376 -10.13442 -9.67179 -8.27042 -6.30684 0.48466 1.12676 1.18307 1.38905 1.40458 1.52406 2.35736 2.38602 2.47563 2.72114 3.08796 3.49723 3.78121 3.84780 3.86019 4.08952 4.17238 4.19297 4.26522 4.29314 4.44503 4.48094 4.55282 4.62183 4.64856 4.72861 4.82365 4.94305 4.99806 5.08195 5.36446 5.45480 5.56790 5.60299 5.68128 5.75136 6.01137 6.30266 6.45002 6.68446 6.77767 7.32715 7.34154 8.89285 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.048918 B = 0.002234 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.244804 B =12530.068119 C =12854.736405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.140 3.860 7 C -0.312 4.312 8 C 0.591 3.409 9 O -0.595 6.595 10 N -0.714 5.714 11 C 0.129 3.871 12 C -0.101 4.101 13 C -0.013 4.013 14 C -0.530 4.530 15 H 0.038 0.962 16 C 0.003 3.997 17 N -0.951 5.951 18 Si 0.947 3.053 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.247 1.247 22 C 0.090 3.910 23 N -0.318 5.318 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.104 0.896 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.210 0.790 32 H 0.413 0.587 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.021 0.979 38 H 0.020 0.980 39 H 0.265 0.735 40 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.374 -28.365 -1.013 32.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.010 3.990 5 N -0.137 5.137 6 C -0.012 4.012 7 C -0.326 4.326 8 C 0.380 3.620 9 O -0.478 6.478 10 N -0.364 5.364 11 C 0.005 3.995 12 C -0.139 4.139 13 C -0.051 4.051 14 C -0.568 4.568 15 H 0.056 0.944 16 C -0.193 4.193 17 N -0.592 5.592 18 Si 0.771 3.229 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.170 1.170 22 C -0.098 4.098 23 N -0.138 5.138 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.123 0.877 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.152 0.848 31 H 0.226 0.774 32 H 0.249 0.751 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -16.723 -29.288 -1.157 33.746 hybrid contribution 0.749 1.383 0.578 1.676 sum -15.974 -27.905 -0.579 32.159 Atomic orbital electron populations 1.22967 0.78719 1.04291 1.00917 1.87749 1.21967 1.26964 1.95676 1.22549 0.92682 0.85286 1.01621 1.21746 0.92460 0.77456 1.07348 1.48511 1.32415 1.12554 1.20261 1.23335 0.89837 0.93877 0.94134 1.20196 1.11202 0.96853 1.04391 1.17556 0.80366 0.81321 0.82740 1.90739 1.52102 1.76595 1.28341 1.45732 1.46013 1.12744 1.31935 1.21293 0.92930 0.89263 0.95982 1.21487 1.00348 0.92604 0.99439 1.19478 0.95841 0.93559 0.96232 1.21485 1.25252 0.97684 1.12364 0.94387 1.25991 0.98195 0.94666 1.00476 1.70060 1.41388 1.05063 1.42646 0.85697 0.79422 0.77992 0.79794 1.19288 1.21121 1.17039 1.24513 0.92416 0.98561 0.94275 1.77144 1.25052 0.97409 1.14181 0.93180 0.93317 0.87745 0.92636 0.92450 0.87642 0.84792 0.77354 0.75068 0.92392 0.92316 0.91630 0.91650 0.96047 0.96170 0.92572 0.76867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.40 -5.13 10.70 -148.98 -1.59 -6.73 16 3 C 0.06 0.66 6.11 71.98 0.44 1.10 16 4 C 0.13 1.33 6.86 86.38 0.59 1.92 16 5 N -0.36 -5.73 3.65 -346.28 -1.26 -7.00 16 6 C 0.14 2.46 11.25 84.28 0.95 3.41 16 7 C -0.31 -6.77 6.13 -20.15 -0.12 -6.89 16 8 C 0.59 16.60 7.81 86.66 0.68 17.27 16 9 O -0.60 -21.16 16.90 -4.04 -0.07 -21.23 16 10 N -0.71 -18.60 5.55 -466.36 -2.59 -21.18 16 11 C 0.13 4.08 5.67 86.38 0.49 4.57 16 12 C -0.10 -3.61 5.27 30.59 0.16 -3.45 16 13 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 14 C -0.53 -30.05 9.66 25.60 0.25 -29.80 16 15 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 16 C 0.00 0.20 5.47 84.65 0.46 0.66 16 17 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 18 Si 0.95 44.41 27.47 68.60 1.88 46.29 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.25 -10.80 6.54 99.48 0.65 -10.14 16 22 C 0.09 1.66 11.50 85.65 0.99 2.65 16 23 N -0.32 -6.24 12.33 -56.27 -0.69 -6.93 16 24 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.13 0.71 8.06 -2.39 -0.02 0.69 16 31 H 0.21 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.41 8.27 7.43 -92.71 -0.69 7.58 16 33 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.06 2.27 8.14 -2.38 -0.02 2.26 16 37 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 38 H 0.02 0.89 7.57 -2.38 -0.02 0.88 16 39 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.21 2.62 7.50 -2.91 -0.02 2.60 16 Total: -1.00 -75.77 345.63 2.51 -73.26 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.29 Total: 10.27 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 6.25 Total: -7.57 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -4.25 Total: -94.29 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -1.66 Total: -27.96 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.29 kcal Total: -75.77 2.51 -73.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.096 kcal (2) G-P(sol) polarization free energy of solvation -75.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds