Wall clock time and date at job start Tue Mar 31 2020 05:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47109 * 2 1 4 4 C 1.52994 * 109.47002 * 239.99619 * 2 1 3 5 5 C 1.50710 * 109.46942 * 119.99798 * 2 1 3 6 6 N 1.30844 * 126.17106 * 60.02602 * 5 2 1 7 7 N 1.28680 * 109.43980 * 179.74382 * 6 5 2 8 8 C 1.31300 * 109.17411 * 0.38357 * 7 6 5 9 9 C 1.47466 * 126.36019 * 179.88613 * 8 7 6 10 10 O 1.21592 * 120.00237 * 179.68687 * 9 8 7 11 11 N 1.34774 * 119.99834 * 359.68902 * 9 8 7 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47131 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47130 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00100 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99896 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99699 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47182 * 90.00248 * 19 17 15 21 21 H 1.48498 * 109.47091 * 210.00192 * 19 17 15 22 22 H 1.48505 * 109.47095 * 329.99725 * 19 17 15 23 23 O 1.33950 * 126.17174 * 240.00059 * 5 2 1 24 24 H 1.09004 * 109.47226 * 299.99696 * 1 2 3 25 25 H 1.08997 * 109.47416 * 60.00521 * 1 2 3 26 26 H 1.09005 * 109.47271 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47311 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46767 * 299.99520 * 3 2 1 29 29 H 1.08998 * 109.47207 * 60.00238 * 3 2 1 30 30 H 1.09000 * 109.47288 * 299.99769 * 4 2 1 31 31 H 1.08991 * 109.47296 * 60.00410 * 4 2 1 32 32 H 1.09006 * 109.47116 * 180.02562 * 4 2 1 33 33 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 35 35 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 36 36 H 1.09001 * 109.46832 * 299.99854 * 13 12 11 37 37 H 1.08996 * 109.46952 * 59.99873 * 13 12 11 38 38 H 1.09001 * 109.46997 * 299.99574 * 14 13 12 39 39 H 1.09004 * 109.47298 * 59.99717 * 14 13 12 40 40 H 0.97007 * 119.99539 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 7 1.7922 -1.9548 1.5560 7 7 2.3818 -2.2285 2.6665 8 6 3.0146 -1.1602 3.0935 9 6 3.8111 -1.0516 4.3298 10 8 4.3557 -0.0017 4.6120 11 7 3.9356 -2.1162 5.1469 12 6 4.7264 -2.0082 6.3754 13 6 4.7065 -3.3478 7.1142 14 6 5.5319 -3.2348 8.3975 15 6 5.5117 -4.5542 9.1255 16 1 4.9653 -5.3898 8.7139 17 6 6.1919 -4.6947 10.3167 18 7 6.8578 -3.6772 10.8176 19 14 6.1675 -6.3302 11.2187 20 1 7.3042 -7.1669 10.7575 21 1 6.2891 -6.0918 12.6794 22 1 4.8896 -7.0321 10.9366 23 8 2.8055 -0.1820 2.1882 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2076 -2.1391 32 1 3.1300 -0.7217 -1.2489 33 1 3.5009 -2.9537 4.9220 34 1 5.7545 -1.7476 6.1239 35 1 4.3014 -1.2341 7.0143 36 1 3.6785 -3.6087 7.3657 37 1 5.1318 -4.1215 6.4751 38 1 6.5599 -2.9737 8.1464 39 1 5.1062 -2.4611 9.0364 40 1 7.3360 -3.7760 11.6558 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601190638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:08 Heat of formation + Delta-G solvation = -22.418522 kcal Electronic energy + Delta-G solvation = -21129.902176 eV Core-core repulsion = 17753.148393 eV Total energy + Delta-G solvation = -3376.753782 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.58502 -39.70613 -37.64059 -36.65770 -35.61487 -33.48700 -31.82719 -30.75133 -27.98538 -27.89467 -27.17545 -25.24079 -24.17390 -23.07160 -21.20752 -20.68334 -20.46540 -18.26708 -17.80891 -16.99130 -16.53662 -16.06175 -15.49866 -15.49253 -14.64131 -14.54234 -14.45099 -14.10712 -13.97264 -12.98267 -12.87968 -12.70908 -12.59436 -12.34187 -12.26894 -12.24976 -11.93662 -11.89782 -11.72713 -11.70131 -11.36524 -10.92971 -10.84556 -10.67732 -10.49785 -10.02118 -9.94162 -9.51904 -9.16930 -9.10907 -8.39479 -6.04243 -4.07320 0.35733 1.49609 1.72963 2.79904 2.91975 3.30425 3.36931 3.39914 3.64246 3.88742 4.18419 4.21528 4.39469 4.43078 4.80502 4.92465 4.99285 5.05074 5.07439 5.20017 5.27023 5.28203 5.31892 5.37756 5.53408 5.58145 5.63124 5.67875 5.72502 6.02011 6.10673 6.49160 6.66637 6.90567 7.23416 7.59532 7.70580 7.75992 7.88881 7.94081 8.34690 8.99125 9.57168 11.07006 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.047454 B = 0.002460 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.897296 B =11379.220482 C =11762.158422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.030 3.970 3 C -0.151 4.151 4 C -0.142 4.142 5 C 0.187 3.813 6 N -0.281 5.281 7 N -0.236 5.236 8 C 0.125 3.875 9 C 0.608 3.392 10 O -0.510 6.510 11 N -0.687 5.687 12 C 0.116 3.884 13 C -0.123 4.123 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 O -0.188 6.188 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.413 0.587 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.829 8.570 -24.233 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 C -0.209 4.209 4 C -0.200 4.200 5 C -0.022 4.022 6 N -0.130 5.130 7 N -0.090 5.090 8 C -0.087 4.087 9 C 0.387 3.613 10 O -0.383 6.383 11 N -0.340 5.340 12 C -0.005 4.005 13 C -0.161 4.161 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 O -0.064 6.064 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.722 8.223 -23.857 27.824 hybrid contribution 0.302 -0.146 0.559 0.652 sum -11.420 8.077 -23.298 27.174 Atomic orbital electron populations 1.21954 0.90794 1.03932 1.03294 1.19367 0.96987 0.94990 0.85849 1.21985 1.02302 0.93018 1.03601 1.21952 1.01851 1.01384 0.94786 1.28443 0.90758 0.90592 0.92450 1.74605 1.19279 1.11842 1.07259 1.74782 1.06970 1.22475 1.04813 1.27471 1.02607 0.83134 0.95500 1.15940 0.80254 0.85359 0.79761 1.90911 1.46610 1.28094 1.72697 1.45946 1.51761 1.13178 1.23076 1.21946 0.95014 1.01124 0.82413 1.21946 1.01928 0.93110 0.99080 1.19037 0.94785 0.97614 0.89894 1.21189 1.31528 0.97269 1.06139 0.92530 1.25029 0.95346 0.96660 0.97431 1.69963 1.32765 1.30356 1.20185 0.86567 0.78439 0.83938 0.78899 1.20640 1.21214 1.19849 1.84832 1.53290 1.40448 1.27791 0.91866 0.90204 0.90781 0.91451 0.90337 0.91449 0.90782 0.90203 0.91868 0.75124 0.90732 0.90728 0.92256 0.92254 0.96137 0.96126 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 8.46 37.16 0.31 -0.47 16 2 C 0.03 0.21 0.99 -155.66 -0.15 0.06 16 3 C -0.15 -0.89 8.05 37.16 0.30 -0.60 16 4 C -0.14 -0.79 8.46 37.15 0.31 -0.47 16 5 C 0.19 2.09 6.57 -12.69 -0.08 2.01 16 6 N -0.28 -3.67 12.25 32.57 0.40 -3.27 16 7 N -0.24 -3.37 11.95 32.01 0.38 -2.99 16 8 C 0.13 1.81 8.21 -14.02 -0.12 1.70 16 9 C 0.61 9.54 7.82 -12.50 -0.10 9.44 16 10 O -0.51 -9.46 17.11 1.33 0.02 -9.44 16 11 N -0.69 -10.04 5.55 -61.37 -0.34 -10.38 16 12 C 0.12 1.93 5.67 -4.04 -0.02 1.91 16 13 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 O -0.19 -2.52 10.31 1.00 0.01 -2.51 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.41 5.31 8.18 -40.82 -0.33 4.97 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -32.13 346.70 -5.04 -37.17 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -6.22 Total: -2.77 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.24 Total: -1.61 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 1.18 Total: -42.41 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.03 Total: -11.95 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.13 -5.04 -37.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601190638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.755 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds