Wall clock time and date at job start Tue Mar 31 2020 05:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47109 * 2 1 4 4 C 1.52994 * 109.47002 * 239.99619 * 2 1 3 5 5 C 1.50710 * 109.46942 * 119.99798 * 2 1 3 6 6 N 1.30844 * 126.17106 * 60.02602 * 5 2 1 7 7 N 1.28680 * 109.43980 * 179.74382 * 6 5 2 8 8 C 1.31300 * 109.17411 * 0.38357 * 7 6 5 9 9 C 1.47466 * 126.36019 * 179.88613 * 8 7 6 10 10 O 1.21592 * 120.00237 * 179.68687 * 9 8 7 11 11 N 1.34774 * 119.99834 * 359.68902 * 9 8 7 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47131 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47130 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00100 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99896 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99699 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47182 * 90.00248 * 19 17 15 21 21 H 1.48498 * 109.47091 * 210.00192 * 19 17 15 22 22 H 1.48505 * 109.47095 * 329.99725 * 19 17 15 23 23 O 1.33950 * 126.17174 * 240.00059 * 5 2 1 24 24 H 1.09004 * 109.47226 * 299.99696 * 1 2 3 25 25 H 1.08997 * 109.47416 * 60.00521 * 1 2 3 26 26 H 1.09005 * 109.47271 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47311 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46767 * 299.99520 * 3 2 1 29 29 H 1.08998 * 109.47207 * 60.00238 * 3 2 1 30 30 H 1.09000 * 109.47288 * 299.99769 * 4 2 1 31 31 H 1.08991 * 109.47296 * 60.00410 * 4 2 1 32 32 H 1.09006 * 109.47116 * 180.02562 * 4 2 1 33 33 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 35 35 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 36 36 H 1.09001 * 109.46832 * 299.99854 * 13 12 11 37 37 H 1.08996 * 109.46952 * 59.99873 * 13 12 11 38 38 H 1.09001 * 109.46997 * 299.99574 * 14 13 12 39 39 H 1.09004 * 109.47298 * 59.99717 * 14 13 12 40 40 H 0.97007 * 119.99539 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 7 1.7922 -1.9548 1.5560 7 7 2.3818 -2.2285 2.6665 8 6 3.0146 -1.1602 3.0935 9 6 3.8111 -1.0516 4.3298 10 8 4.3557 -0.0017 4.6120 11 7 3.9356 -2.1162 5.1469 12 6 4.7264 -2.0082 6.3754 13 6 4.7065 -3.3478 7.1142 14 6 5.5319 -3.2348 8.3975 15 6 5.5117 -4.5542 9.1255 16 1 4.9653 -5.3898 8.7139 17 6 6.1919 -4.6947 10.3167 18 7 6.8578 -3.6772 10.8176 19 14 6.1675 -6.3302 11.2187 20 1 7.3042 -7.1669 10.7575 21 1 6.2891 -6.0918 12.6794 22 1 4.8896 -7.0321 10.9366 23 8 2.8055 -0.1820 2.1882 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2076 -2.1391 32 1 3.1300 -0.7217 -1.2489 33 1 3.5009 -2.9537 4.9220 34 1 5.7545 -1.7476 6.1239 35 1 4.3014 -1.2341 7.0143 36 1 3.6785 -3.6087 7.3657 37 1 5.1318 -4.1215 6.4751 38 1 6.5599 -2.9737 8.1464 39 1 5.1062 -2.4611 9.0364 40 1 7.3360 -3.7760 11.6558 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601190638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:07 Heat of formation + Delta-G solvation = -47.469613 kcal Electronic energy + Delta-G solvation = -21130.988472 eV Core-core repulsion = 17753.148393 eV Total energy + Delta-G solvation = -3377.840079 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.61200 -41.00777 -38.21720 -37.73738 -37.08093 -35.32818 -33.41561 -32.05082 -28.90142 -28.40994 -28.31763 -26.56693 -25.12335 -24.73666 -22.49637 -22.21672 -21.28795 -19.49724 -18.85250 -18.49894 -18.02775 -17.20080 -16.84431 -16.53564 -16.38308 -15.56056 -15.53954 -15.07433 -14.94070 -14.29519 -13.88286 -13.79924 -13.61468 -13.51384 -13.26585 -13.25170 -13.04681 -12.76647 -12.70754 -12.59969 -12.52674 -12.40510 -12.21500 -12.02498 -11.88083 -11.70595 -11.42681 -11.19609 -11.02227 -10.54054 -10.42044 -8.18895 -6.29447 -0.71745 0.44548 0.71236 1.42908 1.43562 1.54585 1.58261 1.90839 2.42397 2.61300 2.88575 3.15362 3.52670 3.72677 3.77665 3.81270 3.95872 4.07203 4.17071 4.22665 4.51071 4.64782 4.65732 4.74423 4.76039 4.85666 4.86561 4.90994 4.92227 5.14708 5.16119 5.16509 5.26140 5.28153 5.52866 5.71705 5.85468 5.99169 6.23882 6.59417 6.79501 6.87789 7.39891 8.92994 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.047454 B = 0.002460 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.897296 B =11379.220482 C =11762.158422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.026 3.974 3 C -0.150 4.150 4 C -0.140 4.140 5 C 0.203 3.797 6 N -0.301 5.301 7 N -0.236 5.236 8 C 0.110 3.890 9 C 0.615 3.385 10 O -0.543 6.543 11 N -0.675 5.675 12 C 0.129 3.871 13 C -0.105 4.105 14 C 0.024 3.976 15 C -0.541 4.541 16 H 0.065 0.935 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.965 3.035 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.262 1.262 23 O -0.197 6.197 24 H 0.056 0.944 25 H 0.111 0.889 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.055 0.945 33 H 0.423 0.577 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.070 0.930 38 H -0.003 1.003 39 H -0.003 1.003 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.223 7.974 -26.169 30.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.024 3.976 3 C -0.208 4.208 4 C -0.197 4.197 5 C -0.005 4.005 6 N -0.150 5.150 7 N -0.091 5.091 8 C -0.102 4.102 9 C 0.395 3.605 10 O -0.419 6.419 11 N -0.328 5.328 12 C 0.007 3.993 13 C -0.143 4.143 14 C -0.014 4.014 15 C -0.579 4.579 16 H 0.083 0.917 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.789 3.211 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.186 1.186 23 O -0.073 6.073 24 H 0.075 0.925 25 H 0.130 0.870 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.128 0.872 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.075 0.925 33 H 0.261 0.739 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.142 7.596 -25.821 29.952 hybrid contribution 0.687 0.085 1.056 1.262 sum -12.455 7.681 -24.765 28.765 Atomic orbital electron populations 1.21993 0.89318 1.03850 1.04560 1.19827 0.97993 0.95393 0.84367 1.22019 1.01747 0.92301 1.04714 1.21991 1.01473 1.01212 0.95045 1.29531 0.88500 0.90148 0.92357 1.74587 1.20209 1.12959 1.07204 1.74739 1.06620 1.22460 1.05240 1.27019 1.03731 0.83725 0.95744 1.15941 0.79755 0.84801 0.79982 1.90892 1.48093 1.29278 1.73633 1.45683 1.51283 1.13560 1.22254 1.21611 0.95102 0.99688 0.82938 1.21651 1.01413 0.94555 0.96708 1.18940 0.94332 0.95966 0.92122 1.21679 1.31216 0.98440 1.06526 0.91660 1.25979 0.95007 1.00454 0.98562 1.70099 1.33825 1.32698 1.20754 0.85451 0.78974 0.79314 0.77327 1.19896 1.21067 1.18594 1.84848 1.53835 1.40486 1.28128 0.92531 0.87034 0.91535 0.92382 0.87216 0.92375 0.91536 0.87033 0.92539 0.73865 0.91214 0.91208 0.91130 0.91110 0.98451 0.98437 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.46 71.98 0.61 -0.60 16 2 C 0.03 0.31 0.99 -52.93 -0.05 0.26 16 3 C -0.15 -1.45 8.05 71.98 0.58 -0.87 16 4 C -0.14 -1.21 8.46 71.98 0.61 -0.60 16 5 C 0.20 4.37 6.57 88.26 0.58 4.95 16 6 N -0.30 -7.65 12.25 -165.38 -2.03 -9.68 16 7 N -0.24 -6.61 11.95 -166.41 -1.99 -8.60 16 8 C 0.11 3.18 8.21 87.21 0.72 3.89 16 9 C 0.61 19.33 7.82 86.68 0.68 20.01 16 10 O -0.54 -20.47 17.11 -0.22 0.00 -20.47 16 11 N -0.68 -19.41 5.55 -466.33 -2.59 -22.00 16 12 C 0.13 4.27 5.67 86.38 0.49 4.76 16 13 C -0.11 -3.91 5.27 30.59 0.16 -3.75 16 14 C 0.02 1.21 4.97 29.85 0.15 1.36 16 15 C -0.54 -29.74 9.11 25.60 0.23 -29.51 16 16 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 17 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 18 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 19 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 23 O -0.20 -5.23 10.31 -1.41 -0.01 -5.24 16 24 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 25 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.42 10.44 8.18 -92.71 -0.76 9.68 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 40 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 Total: -1.00 -69.89 346.70 1.18 -68.71 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 0.28 Total: 7.41 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 5.21 Total: 0.23 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -6.32 Total: -96.32 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.02 Total: -25.71 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -69.89 1.18 -68.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601190638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.244 kcal (2) G-P(sol) polarization free energy of solvation -69.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds