Wall clock time and date at job start Tue Mar 31 2020 05:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21592 * 120.00054 * 0.02562 * 14 13 3 16 16 C 1.47469 * 120.00071 * 180.02562 * 14 13 3 17 17 N 1.31296 * 126.35620 * 0.02761 * 16 14 13 18 18 N 1.28685 * 109.17187 * 180.02562 * 17 16 14 19 19 C 1.30844 * 109.44311 * 359.97438 * 18 17 16 20 20 C 1.50696 * 126.17223 * 179.97438 * 19 18 17 21 21 C 1.52996 * 109.47071 * 60.02729 * 20 19 18 22 22 C 1.52998 * 109.47003 * 180.02562 * 20 19 18 23 23 C 1.53003 * 109.47207 * 300.02523 * 20 19 18 24 24 O 1.33955 * 107.65476 * 359.74051 * 19 18 17 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 32 32 H 1.09003 * 109.47364 * 60.00163 * 21 20 19 33 33 H 1.09009 * 109.46819 * 180.02562 * 21 20 19 34 34 H 1.09000 * 109.47060 * 299.99359 * 21 20 19 35 35 H 1.09005 * 109.47398 * 60.00323 * 22 20 19 36 36 H 1.09000 * 109.47379 * 179.97438 * 22 20 19 37 37 H 1.09003 * 109.47200 * 299.99695 * 22 20 19 38 38 H 1.09006 * 109.46892 * 59.99935 * 23 20 19 39 39 H 1.08996 * 109.47120 * 179.97438 * 23 20 19 40 40 H 1.08998 * 109.47328 * 300.00186 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6325 -0.4316 16 6 0.0449 3.3233 -2.6271 17 7 0.7799 3.4298 -3.7098 18 7 0.1163 4.0664 -4.6101 19 6 -1.0609 4.3875 -4.1379 20 6 -2.1398 5.1390 -4.8742 21 6 -2.5432 4.3566 -6.1255 22 6 -3.3573 5.3066 -3.9630 23 6 -1.6143 6.5170 -5.2817 24 8 -1.1360 3.9233 -2.8836 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 2.2720 2.1232 -1.9977 32 1 -2.9176 3.3749 -5.8353 33 1 -3.3233 4.9004 -6.6584 34 1 -1.6758 4.2373 -6.7748 35 1 -3.0700 5.8641 -3.0714 36 1 -4.1376 5.8505 -4.4953 37 1 -3.7318 4.3249 -3.6727 38 1 -0.7468 6.3976 -5.9309 39 1 -2.3945 7.0604 -5.8147 40 1 -1.3269 7.0745 -4.3902 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601205193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:27 Heat of formation + Delta-G solvation = -14.053079 kcal Electronic energy + Delta-G solvation = -22338.726658 eV Core-core repulsion = 18962.335628 eV Total energy + Delta-G solvation = -3376.391029 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.21759 -39.21444 -37.41600 -36.28343 -35.23366 -32.66912 -31.46528 -30.34973 -27.78098 -27.71151 -27.22245 -25.01262 -23.81994 -23.05350 -21.09226 -20.34652 -19.59597 -18.26342 -17.44108 -16.76618 -16.02129 -15.81913 -15.30632 -14.75699 -14.56315 -14.33949 -14.22371 -13.51678 -12.78335 -12.77015 -12.68347 -12.42618 -12.33684 -12.24699 -12.06818 -11.95466 -11.68055 -11.49759 -11.46827 -11.34093 -11.10856 -10.99783 -10.90553 -10.43452 -10.31058 -9.84122 -9.65075 -9.60409 -9.17979 -8.59693 -8.11282 -6.19868 -4.29827 0.77515 1.93854 2.10360 3.23212 3.29836 3.31840 3.39338 3.41015 4.02541 4.27707 4.41879 4.42920 4.55706 4.64019 5.10881 5.12523 5.22083 5.23623 5.27864 5.38290 5.45019 5.45245 5.51435 5.59139 5.76795 5.85997 5.91899 6.29031 6.34138 6.52269 6.92027 7.03607 7.06266 7.23236 7.45842 7.60668 7.74739 8.03932 8.11586 8.37925 8.54713 8.80181 9.37003 10.85659 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031297 B = 0.003796 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.427106 B = 7374.776983 C = 7853.334216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.271 3.729 4 H 0.057 0.943 5 C -0.538 4.538 6 H 0.066 0.934 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.905 3.095 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.666 5.666 14 C 0.594 3.406 15 O -0.515 6.515 16 C 0.136 3.864 17 N -0.246 5.246 18 N -0.283 5.283 19 C 0.175 3.825 20 C 0.032 3.968 21 C -0.141 4.141 22 C -0.151 4.151 23 C -0.141 4.141 24 O -0.191 6.191 25 H 0.034 0.966 26 H 0.052 0.948 27 H 0.028 0.972 28 H 0.105 0.895 29 H 0.037 0.963 30 H 0.266 0.734 31 H 0.403 0.597 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.076 8.255 -13.529 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C 0.171 3.829 4 H 0.074 0.926 5 C -0.576 4.576 6 H 0.084 0.916 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.732 3.268 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.315 5.315 14 C 0.373 3.627 15 O -0.390 6.390 16 C -0.077 4.077 17 N -0.099 5.099 18 N -0.132 5.132 19 C -0.035 4.035 20 C 0.030 3.970 21 C -0.199 4.199 22 C -0.208 4.208 23 C -0.199 4.199 24 O -0.066 6.066 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.124 0.876 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.238 0.762 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.614 7.972 -13.378 18.846 hybrid contribution 0.324 0.062 0.525 0.620 sum -10.290 8.034 -12.853 18.320 Atomic orbital electron populations 1.21873 0.98318 0.98564 1.01060 1.21984 0.92621 0.99287 1.02964 1.19086 0.94949 0.89378 0.79532 0.92567 1.21186 0.90072 1.39611 1.06716 0.91597 1.24869 0.98918 0.94514 0.95190 1.69882 1.35345 1.37336 1.09295 0.86382 0.84358 0.77687 0.78353 1.20484 1.21007 1.19661 1.46403 1.12412 1.53005 1.19676 1.16085 0.84462 0.80096 0.82082 1.90872 1.51293 1.59419 1.37422 1.28083 0.80934 0.99139 0.99495 1.74781 1.25142 1.12770 0.97175 1.74552 1.02462 1.12763 1.23463 1.28296 0.97278 0.97377 0.80590 1.19282 0.89359 0.94268 0.94102 1.21940 1.02679 1.00048 0.95217 1.21971 0.96049 1.03417 0.99381 1.21939 1.02375 0.93130 1.02445 1.84834 1.36465 1.54652 1.30684 0.94729 0.92875 0.95295 0.87649 0.94460 0.92375 0.76236 0.91930 0.90432 0.90875 0.91472 0.90563 0.91483 0.90870 0.90433 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.07 5.45 -26.74 -0.15 -3.21 16 3 C 0.27 6.65 2.24 -69.09 -0.15 6.49 16 4 H 0.06 1.56 7.58 -51.93 -0.39 1.17 16 5 C -0.54 -13.89 8.73 -34.44 -0.30 -14.19 16 6 H 0.07 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.31 16 9 Si 0.91 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.67 -14.15 5.02 -56.00 -0.28 -14.44 16 14 C 0.59 12.45 6.38 -12.50 -0.08 12.37 16 15 O -0.52 -12.03 14.24 1.33 0.02 -12.01 16 16 C 0.14 2.54 8.21 -14.02 -0.12 2.43 16 17 N -0.25 -4.43 11.95 32.01 0.38 -4.05 16 18 N -0.28 -4.57 12.25 32.57 0.40 -4.17 16 19 C 0.17 2.46 6.57 -12.70 -0.08 2.38 16 20 C 0.03 0.30 0.99 -155.66 -0.15 0.14 16 21 C -0.14 -1.08 8.46 37.16 0.31 -0.76 16 22 C -0.15 -1.23 8.05 37.16 0.30 -0.93 16 23 C -0.14 -1.09 8.46 37.16 0.31 -0.77 16 24 O -0.19 -3.21 10.31 0.97 0.01 -3.20 16 25 H 0.03 0.74 5.65 -51.93 -0.29 0.44 16 26 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.11 2.73 5.95 -51.93 -0.31 2.42 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 31 H 0.40 7.90 8.25 -40.82 -0.34 7.56 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -29.18 334.13 -4.65 -33.83 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.93 Total: 4.16 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 0.12 Total: 2.91 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 1.13 Total: -45.97 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.03 Total: -15.22 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.18 -4.65 -33.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.775 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds