Wall clock time and date at job start Tue Mar 31 2020 05:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21592 * 120.00054 * 0.02562 * 14 13 3 16 16 C 1.47469 * 120.00071 * 180.02562 * 14 13 3 17 17 N 1.31296 * 126.35620 * 0.02761 * 16 14 13 18 18 N 1.28685 * 109.17187 * 180.02562 * 17 16 14 19 19 C 1.30844 * 109.44311 * 359.97438 * 18 17 16 20 20 C 1.50696 * 126.17223 * 179.97438 * 19 18 17 21 21 C 1.52996 * 109.47071 * 60.02729 * 20 19 18 22 22 C 1.52998 * 109.47003 * 180.02562 * 20 19 18 23 23 C 1.53003 * 109.47207 * 300.02523 * 20 19 18 24 24 O 1.33955 * 107.65476 * 359.74051 * 19 18 17 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 32 32 H 1.09003 * 109.47364 * 60.00163 * 21 20 19 33 33 H 1.09009 * 109.46819 * 180.02562 * 21 20 19 34 34 H 1.09000 * 109.47060 * 299.99359 * 21 20 19 35 35 H 1.09005 * 109.47398 * 60.00323 * 22 20 19 36 36 H 1.09000 * 109.47379 * 179.97438 * 22 20 19 37 37 H 1.09003 * 109.47200 * 299.99695 * 22 20 19 38 38 H 1.09006 * 109.46892 * 59.99935 * 23 20 19 39 39 H 1.08996 * 109.47120 * 179.97438 * 23 20 19 40 40 H 1.08998 * 109.47328 * 300.00186 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6325 -0.4316 16 6 0.0449 3.3233 -2.6271 17 7 0.7799 3.4298 -3.7098 18 7 0.1163 4.0664 -4.6101 19 6 -1.0609 4.3875 -4.1379 20 6 -2.1398 5.1390 -4.8742 21 6 -2.5432 4.3566 -6.1255 22 6 -3.3573 5.3066 -3.9630 23 6 -1.6143 6.5170 -5.2817 24 8 -1.1360 3.9233 -2.8836 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 2.2720 2.1232 -1.9977 32 1 -2.9176 3.3749 -5.8353 33 1 -3.3233 4.9004 -6.6584 34 1 -1.6758 4.2373 -6.7748 35 1 -3.0700 5.8641 -3.0714 36 1 -4.1376 5.8505 -4.4953 37 1 -3.7318 4.3249 -3.6727 38 1 -0.7468 6.3976 -5.9309 39 1 -2.3945 7.0604 -5.8147 40 1 -1.3269 7.0745 -4.3902 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601205193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:26 Heat of formation + Delta-G solvation = -36.547976 kcal Electronic energy + Delta-G solvation = -22339.702110 eV Core-core repulsion = 18962.335628 eV Total energy + Delta-G solvation = -3377.366481 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.54517 -40.95627 -38.19936 -37.67524 -37.06041 -34.53826 -33.23142 -31.82817 -29.13030 -28.41922 -28.30505 -26.49936 -25.05127 -24.90855 -22.74592 -21.53450 -21.23489 -19.91708 -18.78501 -18.18228 -17.79577 -17.33230 -16.61545 -16.41184 -16.25710 -15.34974 -15.10108 -14.92246 -14.64853 -14.10077 -13.82621 -13.60921 -13.45722 -13.25035 -13.23094 -13.20709 -13.04604 -12.93404 -12.70788 -12.70171 -12.45860 -12.25058 -12.19686 -12.12817 -11.95729 -11.67563 -11.43562 -11.14441 -10.92385 -10.58094 -9.95455 -8.19524 -6.36855 -0.61603 0.58696 0.79169 1.46626 1.47523 1.58052 1.77547 2.08496 2.41366 2.86336 2.98009 3.10949 3.56573 3.74436 3.81924 3.90117 4.04285 4.27228 4.44879 4.50205 4.65772 4.66551 4.66659 4.76875 4.86575 4.87311 4.93501 4.98016 5.16117 5.18409 5.24433 5.27076 5.29144 5.33738 5.54657 5.67634 5.76811 6.07408 6.47107 6.64549 6.85856 6.98162 7.34472 8.86085 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031297 B = 0.003796 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.427106 B = 7374.776983 C = 7853.334216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.123 4.123 3 C 0.278 3.722 4 H 0.016 0.984 5 C -0.554 4.554 6 H 0.072 0.928 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.971 3.029 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.263 1.263 13 N -0.663 5.663 14 C 0.601 3.399 15 O -0.545 6.545 16 C 0.116 3.884 17 N -0.242 5.242 18 N -0.302 5.302 19 C 0.196 3.804 20 C 0.027 3.973 21 C -0.139 4.139 22 C -0.150 4.150 23 C -0.139 4.139 24 O -0.198 6.198 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.268 0.732 31 H 0.412 0.588 32 H 0.054 0.946 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.111 0.889 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.654 9.185 -15.651 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.162 4.162 3 C 0.177 3.823 4 H 0.034 0.966 5 C -0.592 4.592 6 H 0.090 0.910 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.795 3.205 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.187 1.187 13 N -0.313 5.313 14 C 0.381 3.619 15 O -0.422 6.422 16 C -0.097 4.097 17 N -0.096 5.096 18 N -0.150 5.150 19 C -0.013 4.013 20 C 0.025 3.975 21 C -0.196 4.196 22 C -0.207 4.207 23 C -0.196 4.196 24 O -0.074 6.074 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.248 0.752 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.132 0.868 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.192 8.913 -15.538 21.122 hybrid contribution 0.397 -0.134 1.088 1.165 sum -10.794 8.780 -14.451 20.061 Atomic orbital electron populations 1.21730 0.96913 0.99812 1.00154 1.21840 0.93803 0.98442 1.02136 1.18742 0.94434 0.89569 0.79572 0.96601 1.21491 0.90773 1.39758 1.07145 0.90996 1.25687 1.03296 0.94050 0.94795 1.70011 1.37123 1.37881 1.09747 0.85358 0.78980 0.77546 0.78566 1.20366 1.20694 1.18722 1.46128 1.12986 1.53157 1.18985 1.16121 0.83799 0.79426 0.82540 1.90849 1.52033 1.60460 1.38832 1.27292 0.82151 1.01308 0.98942 1.74745 1.25463 1.12332 0.97109 1.74543 1.03436 1.13849 1.23173 1.29568 0.97505 0.94875 0.79319 1.19827 0.88363 0.94810 0.94502 1.21987 1.03440 1.00001 0.94178 1.22014 0.96275 1.03241 0.99186 1.21987 1.03347 0.91992 1.02309 1.84846 1.35783 1.54771 1.32012 0.94676 0.94679 0.92864 0.89872 0.93665 0.92286 0.75205 0.92638 0.86841 0.91571 0.92571 0.86998 0.92495 0.91573 0.86828 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.51 71.98 0.61 -5.05 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.77 16 3 C 0.28 14.07 2.24 44.24 0.10 14.17 16 4 H 0.02 0.94 7.58 -2.39 -0.02 0.92 16 5 C -0.55 -28.95 8.73 25.60 0.22 -28.73 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 7 C 0.02 1.19 5.29 84.65 0.45 1.64 16 8 N -0.91 -50.37 11.29 21.45 0.24 -50.13 16 9 Si 0.97 41.52 29.54 68.60 2.03 43.55 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 13 N -0.66 -28.82 5.02 -449.36 -2.25 -31.07 16 14 C 0.60 25.82 6.38 86.68 0.55 26.37 16 15 O -0.54 -26.33 14.24 -0.22 0.00 -26.33 16 16 C 0.12 4.36 8.21 87.21 0.72 5.07 16 17 N -0.24 -8.70 11.95 -166.40 -1.99 -10.69 16 18 N -0.30 -9.49 12.25 -165.38 -2.03 -11.52 16 19 C 0.20 5.34 6.57 88.25 0.58 5.92 16 20 C 0.03 0.44 0.99 -52.93 -0.05 0.38 16 21 C -0.14 -1.70 8.46 71.98 0.61 -1.09 16 22 C -0.15 -2.05 8.05 71.98 0.58 -1.47 16 23 C -0.14 -1.73 8.46 71.98 0.61 -1.12 16 24 O -0.20 -6.64 10.31 -1.52 -0.02 -6.66 16 25 H 0.03 1.51 5.65 -2.39 -0.01 1.50 16 26 H 0.03 1.63 7.84 -2.39 -0.02 1.62 16 27 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.08 4.42 5.95 -2.39 -0.01 4.40 16 29 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 31 H 0.41 16.32 8.25 -92.71 -0.76 15.56 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -64.28 334.13 1.41 -62.87 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.28 Total: 19.66 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 5.14 Total: 10.32 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -6.03 Total: -103.41 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.02 Total: -32.99 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -64.28 1.41 -62.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.318 kcal (2) G-P(sol) polarization free energy of solvation -64.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds