Wall clock time and date at job start Tue Mar 31 2020 05:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47446 * 2 1 4 4 C 1.52998 * 109.47515 * 239.99758 * 2 1 3 5 5 C 1.50704 * 109.46885 * 64.99893 * 4 2 1 6 6 H 1.07997 * 119.99852 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00141 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99852 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00048 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46853 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.46962 * 119.99959 * 9 7 5 12 12 H 1.48496 * 109.46961 * 239.99953 * 9 7 5 13 13 C 1.53006 * 109.47122 * 119.99975 * 2 1 3 14 14 N 1.46902 * 109.47233 * 185.15821 * 13 2 1 15 15 C 1.47018 * 110.99866 * 75.61500 * 14 13 2 16 16 C 1.53096 * 109.25899 * 182.39340 * 15 14 13 17 17 O 1.43023 * 109.25766 * 303.15707 * 16 15 14 18 18 C 1.43013 * 113.74262 * 58.66661 * 17 16 15 19 19 C 1.47010 * 111.00160 * 199.25190 * 14 13 2 20 20 H 1.09005 * 109.50525 * 297.54381 * 19 14 13 21 21 C 1.50699 * 109.50400 * 57.67241 * 19 14 13 22 22 N 1.34495 * 126.28357 * 224.70841 * 21 19 14 23 23 C 1.31139 * 105.61157 * 179.90737 * 22 21 19 24 24 O 1.33641 * 106.89852 * 0.35648 * 23 22 21 25 25 N 1.21299 * 109.80978 * 359.76788 * 24 23 22 26 26 H 1.08997 * 109.47351 * 294.56990 * 1 2 3 27 27 H 1.08997 * 109.47364 * 54.57712 * 1 2 3 28 28 H 1.09002 * 109.46738 * 174.57119 * 1 2 3 29 29 H 1.09000 * 109.47433 * 184.99757 * 4 2 1 30 30 H 1.08999 * 109.47190 * 305.00429 * 4 2 1 31 31 H 0.96994 * 120.00231 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.46800 * 305.15799 * 13 2 1 33 33 H 1.08999 * 109.47021 * 65.15613 * 13 2 1 34 34 H 1.08997 * 109.51131 * 302.33028 * 15 14 13 35 35 H 1.08999 * 109.50559 * 62.46246 * 15 14 13 36 36 H 1.08998 * 109.50898 * 63.08356 * 16 15 14 37 37 H 1.08998 * 109.51270 * 183.21836 * 16 15 14 38 38 H 1.09002 * 109.50494 * 61.26585 * 18 17 16 39 39 H 1.08990 * 109.50836 * 181.39857 * 18 17 16 40 40 H 1.07996 * 126.54790 * 180.12552 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3756 7 6 1.9924 -0.4023 -3.7283 8 7 2.6757 -1.5192 -3.8511 9 14 1.4989 0.5628 -5.2496 10 1 0.7423 1.7743 -4.8433 11 1 2.7173 0.9667 -5.9965 12 1 0.6442 -0.2857 -6.1184 13 6 2.0400 -0.7213 1.2493 14 7 3.5037 -0.6144 1.3132 15 6 3.9155 0.7300 1.7426 16 6 5.4441 0.8155 1.7379 17 8 5.9765 -0.2093 2.5817 18 6 5.5958 -1.5316 2.1919 19 6 4.0687 -1.6408 2.2012 20 1 3.6990 -1.4882 3.2153 21 6 3.6589 -3.0072 1.7155 22 7 3.2056 -4.0195 2.4763 23 6 2.9712 -5.0073 1.6462 24 8 3.2929 -4.5724 0.4241 25 7 3.6841 -3.4258 0.4856 26 1 -0.3634 0.4273 0.9346 27 1 -0.3634 0.5956 -0.8374 28 1 -0.3633 -1.0231 -0.0972 29 1 3.1264 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 2.9230 -1.8422 -4.7317 32 1 1.6032 -0.2635 2.1368 33 1 1.7540 -1.7721 1.2043 34 1 3.5074 1.4722 1.0566 35 1 3.5435 0.9204 2.7493 36 1 5.8132 0.6782 0.7216 37 1 5.7553 1.7916 2.1101 38 1 5.9693 -1.7370 1.1887 39 1 6.0165 -2.2528 2.8924 40 1 2.5942 -5.9864 1.9018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602599777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:12 Heat of formation + Delta-G solvation = 31.164177 kcal Electronic energy + Delta-G solvation = -23372.997644 eV Core-core repulsion = 19998.567382 eV Total energy + Delta-G solvation = -3374.430262 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.43126 -39.71410 -36.66041 -35.71580 -34.02982 -32.57450 -31.89062 -30.68046 -28.04825 -26.84071 -25.06877 -24.33565 -23.94199 -22.57707 -22.37874 -20.21427 -18.93220 -17.91959 -17.76539 -16.49094 -16.14813 -16.08411 -15.61681 -15.03235 -14.75580 -14.51729 -14.35968 -13.97628 -13.37540 -12.74884 -12.50790 -12.43365 -12.15580 -11.95172 -11.63153 -11.46583 -11.36012 -11.25357 -10.92643 -10.88418 -10.83051 -10.63321 -10.35210 -10.19814 -10.01418 -9.64551 -9.50289 -9.05780 -8.81412 -8.23256 -8.03438 -5.84418 -3.85857 1.44300 2.34409 3.21217 3.36443 3.44045 3.47305 3.54144 3.76444 4.09753 4.44059 4.55517 4.84451 5.00813 5.08305 5.20252 5.33938 5.37193 5.49915 5.59253 5.67207 5.76718 5.79436 5.80367 5.91464 6.01520 6.04189 6.08944 6.21643 6.31152 6.45527 6.91823 6.94321 7.07170 7.20098 7.24175 7.38487 7.88567 8.09995 8.26124 8.42865 8.59760 9.22464 9.75986 11.25854 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.006154 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.939408 B = 4549.028023 C = 5257.851404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 H 0.056 0.944 4 C 0.043 3.957 5 C -0.516 4.516 6 H 0.051 0.949 7 C 0.057 3.943 8 N -0.889 5.889 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.067 3.933 14 N -0.513 5.513 15 C 0.023 3.977 16 C 0.060 3.940 17 O -0.382 6.382 18 C 0.077 3.923 19 C 0.144 3.856 20 H 0.073 0.927 21 C 0.159 3.841 22 N -0.488 5.488 23 C 0.141 3.859 24 O 0.092 5.908 25 N -0.320 5.320 26 H 0.028 0.972 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.005 0.995 31 H 0.256 0.744 32 H 0.024 0.976 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.729 -3.463 14.184 14.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.101 4.101 3 H 0.075 0.925 4 C 0.006 3.994 5 C -0.554 4.554 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.528 5.528 9 Si 0.711 3.289 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.213 1.213 13 C -0.060 4.060 14 N -0.239 5.239 15 C -0.105 4.105 16 C -0.017 4.017 17 O -0.300 6.300 18 C -0.002 4.002 19 C 0.033 3.967 20 H 0.090 0.910 21 C -0.114 4.114 22 N -0.222 5.222 23 C -0.100 4.100 24 O 0.027 5.973 25 N -0.020 5.020 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.024 0.976 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 3.420 -2.864 13.473 14.193 hybrid contribution -1.103 0.137 -0.333 1.161 sum 2.316 -2.727 13.140 13.619 Atomic orbital electron populations 1.21690 0.96380 1.01152 0.99674 1.21230 0.94175 0.99184 0.95498 0.92528 1.18970 0.97451 0.94103 0.88856 1.21342 1.34462 1.08157 0.91448 0.93087 1.24987 0.95518 0.95065 0.98770 1.70007 1.38926 1.21044 1.22829 0.86694 0.78182 0.80180 0.83845 1.19969 1.21199 1.21255 1.22311 0.84931 1.00720 0.98084 1.62120 1.11475 1.01926 1.48374 1.22834 0.96608 0.91395 0.99620 1.22771 0.92167 0.91132 0.95648 1.87963 1.72862 1.14658 1.54528 1.22596 0.90926 0.84906 1.01729 1.20406 0.96889 0.84087 0.95269 0.90970 1.25321 1.02258 0.98259 0.85553 1.71795 1.17470 1.00124 1.32786 1.30388 0.98047 1.01627 0.79932 1.85466 1.57543 1.21180 1.33109 1.75000 1.14351 0.92487 1.20149 0.95340 0.91811 0.93731 0.94772 0.97621 0.93399 0.95813 0.92182 0.88355 0.94254 0.91448 0.88282 0.91371 0.88433 0.72581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.91 37.16 0.33 -2.21 16 2 C -0.08 -1.72 2.39 -90.62 -0.22 -1.93 16 3 H 0.06 1.18 6.74 -51.93 -0.35 0.83 16 4 C 0.04 1.14 4.39 -27.88 -0.12 1.01 16 5 C -0.52 -14.73 8.48 -34.44 -0.29 -15.02 16 6 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 9 Si 0.88 22.10 29.54 -169.99 -5.02 17.08 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 C 0.07 1.23 4.23 -3.82 -0.02 1.21 16 14 N -0.51 -8.93 3.84 -227.72 -0.87 -9.81 16 15 C 0.02 0.34 5.47 -3.71 -0.02 0.32 16 16 C 0.06 0.80 7.01 37.21 0.26 1.06 16 17 O -0.38 -5.55 10.83 -35.23 -0.38 -5.93 16 18 C 0.08 1.11 6.27 37.21 0.23 1.34 16 19 C 0.14 2.27 2.53 -68.75 -0.17 2.10 16 20 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 21 C 0.16 2.62 5.20 -156.37 -0.81 1.81 16 22 N -0.49 -6.95 11.55 -13.72 -0.16 -7.11 16 23 C 0.14 1.57 13.40 51.99 0.70 2.27 16 24 O 0.09 1.43 11.31 18.11 0.20 1.63 16 25 N -0.32 -5.95 12.12 30.88 0.37 -5.58 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 1.30 7.12 -51.93 -0.37 0.93 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.98 7.63 -51.93 -0.40 0.59 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.02 0.40 7.99 -51.93 -0.42 -0.02 16 33 H 0.06 1.19 6.44 -51.93 -0.33 0.85 16 34 H 0.10 1.48 6.73 -51.93 -0.35 1.13 16 35 H 0.04 0.53 8.13 -51.93 -0.42 0.11 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.26 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 326.87 15.07 4.93 4.93 Total: -1.00 -34.30 326.87 -6.37 -40.67 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -5.95 Total: -2.83 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.23 Total: -6.45 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.08 Total: -49.10 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.18 Total: -4.30 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.30 -6.37 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602599777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.832 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds