Wall clock time and date at job start Tue Mar 31 2020 05:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 O 1.20826 * 119.99590 * 120.00152 * 4 2 1 6 6 O 1.34220 * 119.99853 * 300.00271 * 4 2 1 7 7 C 1.45204 * 116.99725 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47137 * 60.00263 * 7 6 4 9 9 C 1.53004 * 109.47115 * 179.97438 * 7 6 4 10 10 C 1.52999 * 109.46987 * 299.99692 * 7 6 4 11 11 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 12 12 C 1.35313 * 125.86475 * 325.00453 * 11 2 1 13 13 C 1.35353 * 106.17098 * 179.97438 * 12 11 2 14 14 C 1.50704 * 126.75081 * 180.02562 * 13 12 11 15 15 C 1.50689 * 109.47002 * 125.00059 * 14 13 12 16 16 H 1.08005 * 120.00400 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99874 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00078 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 120.00134 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46655 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47135 * 119.99928 * 19 17 15 22 22 H 1.48497 * 109.46770 * 239.99915 * 19 17 15 23 23 N 1.33768 * 106.49861 * 0.02562 * 13 12 11 24 24 N 1.28633 * 108.88822 * 359.73221 * 23 13 12 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.08992 * 109.47369 * 59.99918 * 8 7 6 29 29 H 1.09005 * 109.47132 * 179.97438 * 8 7 6 30 30 H 1.09004 * 109.46767 * 299.99727 * 8 7 6 31 31 H 1.09002 * 109.47024 * 59.99789 * 9 7 6 32 32 H 1.08996 * 109.47021 * 179.97438 * 9 7 6 33 33 H 1.09002 * 109.47256 * 300.00025 * 9 7 6 34 34 H 1.08999 * 109.47199 * 60.00613 * 10 7 6 35 35 H 1.09005 * 109.46965 * 180.02562 * 10 7 6 36 36 H 1.08997 * 109.47256 * 299.99742 * 10 7 6 37 37 H 1.07995 * 126.91305 * 359.97438 * 12 11 2 38 38 H 1.09002 * 109.46788 * 245.00286 * 14 13 12 39 39 H 1.08999 * 109.46711 * 5.00191 * 14 13 12 40 40 H 0.97001 * 120.00001 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7270 -1.6927 1.1197 6 8 1.7080 -0.2518 2.4496 7 6 2.2268 -0.9863 3.5897 8 6 3.7560 -0.9858 3.5437 9 6 1.7558 -0.3189 4.8834 10 6 1.7155 -2.4275 3.5433 11 7 2.0184 -0.6906 -1.1961 12 6 1.4358 -1.7588 -1.7883 13 6 2.2126 -2.0703 -2.8520 14 6 1.9875 -3.1894 -3.8359 15 6 1.9578 -2.6299 -5.2348 16 1 2.0892 -1.5700 -5.3954 17 6 1.7629 -3.4710 -6.3097 18 7 1.6034 -4.7617 -6.1142 19 14 1.7267 -2.7775 -8.0439 20 1 1.9295 -1.3073 -7.9933 21 1 2.8088 -3.3996 -8.8485 22 1 0.4125 -3.0744 -8.6683 23 7 3.2194 -1.1896 -2.8581 24 7 3.0726 -0.3824 -1.8674 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 4.1202 0.0410 3.5768 29 1 4.1454 -1.5368 4.3999 30 1 4.0919 -1.4610 2.6220 31 1 0.6662 -0.3188 4.9164 32 1 2.1448 -0.8706 5.7392 33 1 2.1203 0.7078 4.9163 34 1 2.0514 -2.9027 2.6216 35 1 2.1045 -2.9788 4.3994 36 1 0.6260 -2.4278 3.5761 37 1 0.5327 -2.2615 -1.4751 38 1 2.7964 -3.9152 -3.7520 39 1 1.0373 -3.6777 -3.6196 40 1 1.4666 -5.3535 -6.8705 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603201758.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:05 Heat of formation + Delta-G solvation = 8.287244 kcal Electronic energy + Delta-G solvation = -22306.532315 eV Core-core repulsion = 18931.110035 eV Total energy + Delta-G solvation = -3375.422280 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.66758 -41.09305 -37.52272 -35.45283 -34.31489 -33.32982 -31.28204 -30.35719 -27.76552 -27.71904 -27.59645 -25.56584 -23.36731 -23.23237 -20.92011 -20.36934 -19.73991 -17.82503 -17.24124 -16.51857 -16.29460 -16.11204 -15.34746 -14.79925 -14.49904 -14.37011 -14.12842 -13.88673 -13.36113 -12.91215 -12.85853 -12.69371 -12.52009 -12.30000 -12.25706 -12.21933 -12.03610 -11.70576 -11.66228 -11.46217 -11.01261 -10.72281 -10.70644 -10.66831 -10.35187 -10.07145 -9.69485 -9.46342 -9.28599 -8.41692 -8.11473 -5.96669 -3.97211 1.74005 1.85713 2.38144 2.82508 3.37024 3.43298 3.47555 3.54696 4.10092 4.25596 4.35396 4.40533 4.48749 4.53545 4.55086 5.04342 5.13219 5.19666 5.20342 5.26626 5.35008 5.35783 5.40290 5.46602 5.50803 5.64478 5.65730 5.81301 5.94832 5.97790 6.08569 6.16251 6.26577 7.05055 7.13780 7.48885 7.55831 7.65226 8.01252 8.39436 9.06466 9.27683 9.65528 11.14509 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037609 B = 0.003447 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.318771 B = 8121.029237 C = 8266.926206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.161 3.839 3 H 0.144 0.856 4 C 0.454 3.546 5 O -0.474 6.474 6 O -0.346 6.346 7 C 0.118 3.882 8 C -0.185 4.185 9 C -0.139 4.139 10 C -0.185 4.185 11 N -0.297 5.297 12 C -0.067 4.067 13 C 0.038 3.962 14 C 0.092 3.908 15 C -0.502 4.502 16 H 0.060 0.940 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.285 1.285 23 N -0.251 5.251 24 N -0.103 5.103 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.180 0.820 38 H 0.040 0.960 39 H 0.037 0.963 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 9.422 23.368 25.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.161 0.839 4 C 0.293 3.707 5 O -0.359 6.359 6 O -0.264 6.264 7 C 0.082 3.918 8 C -0.242 4.242 9 C -0.197 4.197 10 C -0.242 4.242 11 N -0.094 5.094 12 C -0.215 4.215 13 C -0.098 4.098 14 C 0.053 3.947 15 C -0.541 4.541 16 H 0.078 0.922 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 N -0.119 5.119 24 N -0.081 5.081 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.197 0.803 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.035 9.898 23.183 25.390 hybrid contribution -0.873 -0.506 -0.614 1.181 sum -3.908 9.392 22.569 24.755 Atomic orbital electron populations 1.22158 0.89119 1.04995 1.05435 1.20788 0.97470 0.97346 0.78808 0.83869 1.23508 0.78504 0.83602 0.85090 1.90697 1.33637 1.24724 1.86856 1.86499 1.69818 1.55802 1.14235 1.22255 0.94222 0.91788 0.83521 1.22507 0.93786 1.03106 1.04835 1.21853 1.02445 1.01453 0.93899 1.22505 1.01742 0.95066 1.04870 1.46728 1.19533 1.23106 1.19987 1.23202 1.04299 0.94896 0.99061 1.22991 0.91073 0.99313 0.96408 1.17745 0.97993 0.88579 0.90382 1.21087 1.48542 0.94367 0.90102 0.92174 1.24979 0.95408 0.94805 0.99266 1.69959 1.49985 1.02815 1.31022 0.86459 0.77422 0.79344 0.84371 1.19679 1.20960 1.21126 1.75058 1.21747 1.03412 1.11647 1.78230 1.03717 1.22540 1.03564 0.90493 0.89319 0.88535 0.91839 0.90854 0.89737 0.91351 0.90215 0.91368 0.89711 0.90854 0.91803 0.80321 0.94209 0.94507 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 8.76 37.16 0.33 -1.00 16 2 C 0.16 1.91 3.76 -69.08 -0.26 1.65 16 3 H 0.14 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.45 5.73 6.63 36.01 0.24 5.97 16 5 O -0.47 -7.65 11.92 -18.75 -0.22 -7.88 16 6 O -0.35 -3.56 9.79 -39.23 -0.38 -3.94 16 7 C 0.12 1.07 1.13 -90.62 -0.10 0.96 16 8 C -0.19 -1.78 8.37 37.15 0.31 -1.47 16 9 C -0.14 -0.85 8.85 37.16 0.33 -0.52 16 10 C -0.18 -1.71 8.37 37.16 0.31 -1.39 16 11 N -0.30 -5.17 2.75 -55.89 -0.15 -5.32 16 12 C -0.07 -1.27 10.59 -17.05 -0.18 -1.45 16 13 C 0.04 0.91 6.44 -82.78 -0.53 0.37 16 14 C 0.09 2.45 5.55 -29.04 -0.16 2.29 16 15 C -0.50 -14.64 9.09 -34.45 -0.31 -14.95 16 16 H 0.06 1.79 7.74 -52.48 -0.41 1.38 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 19 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 20 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 N -0.25 -6.17 12.40 33.29 0.41 -5.76 16 24 N -0.10 -2.17 13.17 60.35 0.79 -1.38 16 25 H 0.08 0.66 7.17 -51.93 -0.37 0.28 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 0.55 8.11 -51.93 -0.42 0.13 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.07 5.89 -51.93 -0.31 0.77 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 1.03 5.89 -51.93 -0.31 0.73 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.18 2.76 7.30 -52.49 -0.38 2.38 16 38 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.04 0.97 8.12 -51.93 -0.42 0.55 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -35.09 337.13 -4.87 -39.96 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -5.98 Total: -3.81 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.13 Total: -8.01 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 1.79 Total: -38.62 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.61 Total: -11.82 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.09 -4.87 -39.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603201758.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.250 kcal (2) G-P(sol) polarization free energy of solvation -35.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds