Wall clock time and date at job start Tue Mar 31 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 O 1.20826 * 119.99590 * 120.00152 * 4 2 1 6 6 O 1.34220 * 119.99853 * 300.00271 * 4 2 1 7 7 C 1.45204 * 116.99725 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47137 * 60.00263 * 7 6 4 9 9 C 1.53004 * 109.47115 * 179.97438 * 7 6 4 10 10 C 1.52999 * 109.46987 * 299.99692 * 7 6 4 11 11 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 12 12 C 1.35313 * 125.86475 * 325.00453 * 11 2 1 13 13 C 1.35353 * 106.17098 * 179.97438 * 12 11 2 14 14 C 1.50704 * 126.75081 * 180.02562 * 13 12 11 15 15 C 1.50689 * 109.47002 * 125.00059 * 14 13 12 16 16 H 1.08005 * 120.00400 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99874 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00078 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 120.00134 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46655 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47135 * 119.99928 * 19 17 15 22 22 H 1.48497 * 109.46770 * 239.99915 * 19 17 15 23 23 N 1.33768 * 106.49861 * 0.02562 * 13 12 11 24 24 N 1.28633 * 108.88822 * 359.73221 * 23 13 12 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.08992 * 109.47369 * 59.99918 * 8 7 6 29 29 H 1.09005 * 109.47132 * 179.97438 * 8 7 6 30 30 H 1.09004 * 109.46767 * 299.99727 * 8 7 6 31 31 H 1.09002 * 109.47024 * 59.99789 * 9 7 6 32 32 H 1.08996 * 109.47021 * 179.97438 * 9 7 6 33 33 H 1.09002 * 109.47256 * 300.00025 * 9 7 6 34 34 H 1.08999 * 109.47199 * 60.00613 * 10 7 6 35 35 H 1.09005 * 109.46965 * 180.02562 * 10 7 6 36 36 H 1.08997 * 109.47256 * 299.99742 * 10 7 6 37 37 H 1.07995 * 126.91305 * 359.97438 * 12 11 2 38 38 H 1.09002 * 109.46788 * 245.00286 * 14 13 12 39 39 H 1.08999 * 109.46711 * 5.00191 * 14 13 12 40 40 H 0.97001 * 120.00001 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7270 -1.6927 1.1197 6 8 1.7080 -0.2518 2.4496 7 6 2.2268 -0.9863 3.5897 8 6 3.7560 -0.9858 3.5437 9 6 1.7558 -0.3189 4.8834 10 6 1.7155 -2.4275 3.5433 11 7 2.0184 -0.6906 -1.1961 12 6 1.4358 -1.7588 -1.7883 13 6 2.2126 -2.0703 -2.8520 14 6 1.9875 -3.1894 -3.8359 15 6 1.9578 -2.6299 -5.2348 16 1 2.0892 -1.5700 -5.3954 17 6 1.7629 -3.4710 -6.3097 18 7 1.6034 -4.7617 -6.1142 19 14 1.7267 -2.7775 -8.0439 20 1 1.9295 -1.3073 -7.9933 21 1 2.8088 -3.3996 -8.8485 22 1 0.4125 -3.0744 -8.6683 23 7 3.2194 -1.1896 -2.8581 24 7 3.0726 -0.3824 -1.8674 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 4.1202 0.0410 3.5768 29 1 4.1454 -1.5368 4.3999 30 1 4.0919 -1.4610 2.6220 31 1 0.6662 -0.3188 4.9164 32 1 2.1448 -0.8706 5.7392 33 1 2.1203 0.7078 4.9163 34 1 2.0514 -2.9027 2.6216 35 1 2.1045 -2.9788 4.3994 36 1 0.6260 -2.4278 3.5761 37 1 0.5327 -2.2615 -1.4751 38 1 2.7964 -3.9152 -3.7520 39 1 1.0373 -3.6777 -3.6196 40 1 1.4666 -5.3535 -6.8705 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603201758.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:04 Heat of formation + Delta-G solvation = -14.559592 kcal Electronic energy + Delta-G solvation = -22307.523028 eV Core-core repulsion = 18931.110035 eV Total energy + Delta-G solvation = -3376.412993 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.23357 -42.05928 -38.47346 -36.67686 -35.49237 -35.02442 -33.11998 -31.69109 -29.54139 -28.45171 -28.32256 -26.54964 -25.42057 -24.43310 -22.31706 -21.87064 -20.70812 -18.89698 -18.57597 -18.21548 -17.46160 -17.22011 -16.68499 -16.53134 -15.73777 -15.58907 -15.26387 -14.68924 -14.54574 -14.28569 -14.24084 -13.70554 -13.50308 -13.38249 -13.22002 -13.04390 -13.00996 -12.92700 -12.77587 -12.62675 -12.57544 -12.48965 -12.24469 -11.94868 -11.72180 -11.50292 -11.45891 -11.34422 -10.87258 -10.58960 -9.91662 -8.18557 -6.27652 0.45019 0.88471 1.09048 1.40731 1.42453 1.55667 1.70447 1.72766 2.45004 3.14093 3.22733 3.32902 3.63059 3.64015 3.68440 3.73339 3.89533 4.17984 4.35667 4.48290 4.53825 4.54750 4.59324 4.68764 4.70982 4.77819 4.81061 4.86504 5.06238 5.10056 5.20258 5.22441 5.24638 5.38514 5.39953 5.50317 5.64017 5.76670 6.20963 6.53505 6.80780 7.39125 7.60636 8.92856 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037609 B = 0.003447 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.318771 B = 8121.029237 C = 8266.926206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.149 3.851 3 H 0.170 0.830 4 C 0.460 3.540 5 O -0.515 6.515 6 O -0.334 6.334 7 C 0.109 3.891 8 C -0.184 4.184 9 C -0.133 4.133 10 C -0.183 4.183 11 N -0.279 5.279 12 C -0.037 4.037 13 C -0.003 4.003 14 C 0.102 3.898 15 C -0.522 4.522 16 H 0.047 0.953 17 C 0.007 3.993 18 N -0.928 5.928 19 Si 0.965 3.035 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.270 1.270 23 N -0.297 5.297 24 N -0.112 5.112 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.131 0.869 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.217 0.783 38 H 0.005 0.995 39 H 0.034 0.966 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 11.059 25.134 28.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.046 3.954 3 H 0.187 0.813 4 C 0.301 3.699 5 O -0.403 6.403 6 O -0.251 6.251 7 C 0.074 3.926 8 C -0.242 4.242 9 C -0.190 4.190 10 C -0.240 4.240 11 N -0.076 5.076 12 C -0.187 4.187 13 C -0.140 4.140 14 C 0.064 3.936 15 C -0.561 4.561 16 H 0.066 0.934 17 C -0.191 4.191 18 N -0.568 5.568 19 Si 0.790 3.210 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.195 1.195 23 N -0.164 5.164 24 N -0.090 5.090 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.149 0.851 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.234 0.766 38 H 0.023 0.977 39 H 0.053 0.947 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.862 11.576 24.990 27.967 hybrid contribution -0.318 -0.987 -0.960 1.413 sum -5.180 10.590 24.030 26.766 Atomic orbital electron populations 1.22273 0.85766 1.05692 1.07436 1.21473 0.99947 0.97644 0.76339 0.81306 1.23563 0.77581 0.82818 0.85951 1.90723 1.35502 1.26605 1.87449 1.86501 1.69311 1.55534 1.13707 1.22577 0.93803 0.92077 0.84128 1.22494 0.94583 1.03296 1.03787 1.21876 1.03137 1.01694 0.92323 1.22483 1.02437 0.95203 1.03877 1.47087 1.17819 1.22150 1.20503 1.23504 1.04057 0.94191 0.96900 1.22645 0.93153 0.99956 0.98279 1.17400 0.96424 0.89046 0.90755 1.21295 1.49089 0.93915 0.91752 0.93433 1.25829 0.94711 0.95093 1.03468 1.70057 1.50308 1.03946 1.32521 0.85400 0.78096 0.78444 0.79095 1.19645 1.20363 1.19500 1.74961 1.23172 1.04637 1.13677 1.78078 1.05132 1.22303 1.03502 0.90450 0.88745 0.85052 0.91287 0.89012 0.93288 0.90366 0.88401 0.90776 0.93031 0.89180 0.90705 0.76643 0.97658 0.94731 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.76 71.98 0.63 -1.38 16 2 C 0.15 3.18 3.76 44.25 0.17 3.35 16 3 H 0.17 2.77 8.14 -2.39 -0.02 2.75 16 4 C 0.46 10.94 6.63 71.24 0.47 11.41 16 5 O -0.51 -16.70 11.92 21.96 0.26 -16.44 16 6 O -0.33 -6.04 9.79 -51.32 -0.50 -6.55 16 7 C 0.11 1.74 1.13 -10.79 -0.01 1.73 16 8 C -0.18 -3.34 8.37 71.98 0.60 -2.74 16 9 C -0.13 -1.15 8.85 71.98 0.64 -0.51 16 10 C -0.18 -3.09 8.37 71.98 0.60 -2.49 16 11 N -0.28 -9.48 2.75 -330.73 -0.91 -10.39 16 12 C -0.04 -1.40 10.59 83.49 0.88 -0.51 16 13 C 0.00 -0.16 6.44 41.60 0.27 0.11 16 14 C 0.10 5.73 5.55 29.10 0.16 5.89 16 15 C -0.52 -31.37 9.09 25.60 0.23 -31.14 16 16 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 17 C 0.01 0.41 5.46 84.65 0.46 0.88 16 18 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 19 Si 0.96 46.03 29.54 68.60 2.03 48.06 16 20 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 N -0.30 -15.14 12.40 -48.60 -0.60 -15.75 16 24 N -0.11 -4.80 13.17 37.02 0.49 -4.31 16 25 H 0.08 1.05 7.17 -2.39 -0.02 1.03 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.13 0.87 8.11 -2.38 -0.02 0.85 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.05 1.27 5.89 -2.38 -0.01 1.25 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 1.25 5.89 -2.39 -0.01 1.24 16 35 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.22 6.23 7.30 -2.91 -0.02 6.21 16 38 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 39 H 0.03 1.89 8.12 -2.39 -0.02 1.87 16 40 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -79.91 337.13 7.18 -72.73 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 1.03 Total: 4.27 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 5.11 Total: -15.40 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -0.74 Total: -86.66 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.24 Total: -22.98 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -79.91 7.18 -72.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603201758.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.169 kcal (2) G-P(sol) polarization free energy of solvation -79.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds