Wall clock time and date at job start Tue Mar 31 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99908 * 2 1 4 4 C 1.52997 * 109.47180 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47385 * 68.29779 * 4 3 2 6 6 C 1.46910 * 110.99866 * 57.71510 * 5 4 3 7 7 C 1.50698 * 109.47108 * 66.04478 * 6 5 4 8 8 H 1.07996 * 120.00254 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99687 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99855 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99920 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47108 * 59.99638 * 11 9 7 13 13 H 1.48498 * 109.47026 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46853 * 299.99585 * 11 9 7 15 15 C 1.46898 * 111.00186 * 293.75917 * 5 4 3 16 16 C 1.50703 * 109.46845 * 300.44890 * 15 5 4 17 17 N 1.31130 * 126.55136 * 96.02653 * 16 15 5 18 18 C 1.34490 * 105.61527 * 179.97438 * 17 16 15 19 19 C 1.50692 * 126.29091 * 179.73291 * 18 17 16 20 20 C 1.53005 * 117.50259 * 188.62199 * 19 18 17 21 21 C 1.53002 * 60.00004 * 252.51022 * 20 19 18 22 22 N 1.29952 * 107.42377 * 0.02562 * 18 17 16 23 23 O 1.21299 * 110.25224 * 359.97438 * 22 18 17 24 24 H 1.09000 * 109.46902 * 299.99458 * 1 2 3 25 25 H 1.08997 * 109.47040 * 60.00305 * 1 2 3 26 26 H 1.08994 * 109.46689 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47263 * 60.00188 * 3 2 1 28 28 H 1.09004 * 109.47302 * 299.99919 * 3 2 1 29 29 H 1.08996 * 109.47322 * 308.29723 * 4 3 2 30 30 H 1.09008 * 109.47173 * 188.30190 * 4 3 2 31 31 H 1.08996 * 109.46941 * 186.05241 * 6 5 4 32 32 H 1.09005 * 109.46793 * 306.04192 * 6 5 4 33 33 H 0.97004 * 119.99691 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.47002 * 180.44952 * 15 5 4 35 35 H 1.09000 * 109.46854 * 60.44482 * 15 5 4 36 36 H 1.09002 * 115.54680 * 334.33213 * 19 18 17 37 37 H 1.08993 * 117.49772 * 0.02562 * 20 19 18 38 38 H 1.08996 * 117.49418 * 145.02025 * 20 19 18 39 39 H 1.08999 * 117.49947 * 252.50958 * 21 20 19 40 40 H 1.09000 * 117.51651 * 107.47862 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9827 0.6357 -1.2877 6 6 3.5321 1.4776 -2.4042 7 6 4.2152 2.8187 -2.3296 8 1 4.9138 3.0253 -1.5324 9 6 3.9475 3.7824 -3.2786 10 7 3.0963 3.5310 -4.2491 11 14 4.7948 5.4447 -3.1866 12 1 6.2652 5.2561 -3.2717 13 1 4.3392 6.2956 -4.3152 14 1 4.4537 6.1036 -1.9002 15 6 3.5264 -0.7504 -1.4560 16 6 4.0783 -1.5998 -0.3401 17 7 3.4655 -1.9197 0.7742 18 6 4.3353 -2.6830 1.4594 19 6 4.1053 -3.2996 2.8151 20 6 5.3007 -3.9639 3.5011 21 6 4.1774 -4.8243 2.9191 22 7 5.4129 -2.7861 0.7405 23 8 5.2857 -2.1711 -0.2973 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8477 0.5210 0.8056 30 1 3.9780 2.1698 0.1477 31 1 3.7830 0.9939 -3.3482 32 1 2.4526 1.6156 -2.3425 33 1 2.9082 4.2089 -4.9170 34 1 3.8780 -1.1350 -2.4134 35 1 2.4371 -0.7799 -1.4304 36 1 3.3827 -2.7855 3.4488 37 1 6.2536 -3.9546 2.9721 38 1 5.3648 -3.8867 4.5864 39 1 3.5025 -5.3133 3.6216 40 1 4.3909 -5.3815 2.0069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610392007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:11 Heat of formation + Delta-G solvation = 66.811387 kcal Electronic energy + Delta-G solvation = -22693.736894 eV Core-core repulsion = 19320.852412 eV Total energy + Delta-G solvation = -3372.884483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.17346 -38.40512 -37.68948 -36.08992 -34.86288 -32.81346 -31.83609 -29.23530 -27.90543 -26.12642 -25.08758 -24.77269 -23.10684 -22.80108 -22.52609 -20.51288 -19.44589 -17.70007 -17.30963 -16.45064 -16.08843 -16.00207 -15.60672 -15.13016 -14.76611 -14.51277 -14.04256 -13.93470 -13.56952 -12.78516 -12.40040 -12.08384 -11.99031 -11.84103 -11.71693 -11.65610 -11.44050 -11.30742 -11.11155 -10.86791 -10.74544 -10.73005 -10.56477 -10.51250 -10.33524 -9.99359 -9.47421 -9.33863 -9.00827 -8.48889 -7.36332 -6.09954 -4.11656 1.50151 2.47931 3.27175 3.30070 3.34754 3.37967 3.66068 3.75189 4.22674 4.32876 4.38723 4.66248 4.77771 4.82222 5.00706 5.26454 5.40022 5.48260 5.55649 5.57543 5.61102 5.74268 5.83643 5.84629 5.88556 5.88821 5.92106 5.93744 6.12501 6.23566 6.33344 6.41601 6.63652 7.10566 7.23641 7.59898 7.68255 7.91890 8.03939 8.38636 8.56782 8.94890 9.52888 11.00536 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.004379 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.646788 B = 6392.351311 C = 6965.809460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.020 3.980 4 C 0.067 3.933 5 N -0.526 5.526 6 C 0.190 3.810 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.059 3.941 10 N -0.897 5.897 11 Si 0.898 3.102 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.129 3.871 16 C 0.216 3.784 17 N -0.461 5.461 18 C 0.186 3.814 19 C -0.070 4.070 20 C -0.161 4.161 21 C -0.159 4.159 22 N -0.397 5.397 23 O 0.076 5.924 24 H 0.032 0.968 25 H 0.036 0.964 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.035 0.965 32 H 0.006 0.994 33 H 0.263 0.737 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.510 -11.646 11.323 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C -0.058 4.058 4 C -0.062 4.062 5 N -0.252 5.252 6 C 0.066 3.934 7 C -0.549 4.549 8 H 0.082 0.918 9 C -0.143 4.143 10 N -0.536 5.536 11 Si 0.725 3.275 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.001 4.001 16 C -0.004 4.004 17 N -0.195 5.195 18 C -0.086 4.086 19 C -0.090 4.090 20 C -0.199 4.199 21 C -0.198 4.198 22 N -0.106 5.106 23 O 0.019 5.981 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.053 0.947 32 H 0.023 0.977 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.150 0.850 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.594 -12.175 11.664 16.936 hybrid contribution -0.746 1.409 -0.168 1.603 sum -2.340 -10.766 11.496 15.923 Atomic orbital electron populations 1.22638 0.82839 1.01737 0.99373 1.88055 1.18262 1.27777 1.94831 1.23416 0.96533 0.84942 1.00909 1.22188 0.90409 1.01457 0.92155 1.62438 1.59103 0.99291 1.04332 1.19856 0.94672 0.91534 0.87305 1.21062 1.25215 0.96985 1.11598 0.91845 1.24949 0.95282 0.98848 0.95242 1.69937 1.34554 1.34777 1.14334 0.86564 0.80045 0.83384 0.77462 1.20091 1.21360 1.20293 1.20967 1.00061 0.88397 0.90638 1.28980 0.81159 0.94147 0.96146 1.72049 1.29376 1.14380 1.03652 1.24770 0.86915 0.98226 0.98672 1.19968 1.03685 0.95151 0.90202 1.23048 0.93937 1.02483 1.00452 1.23037 1.01942 0.91363 1.03426 1.74517 1.23178 1.16780 0.96175 1.85303 1.34564 1.47462 1.30797 0.94927 0.94510 0.90443 0.94227 0.91130 0.92157 0.88499 0.94694 0.97681 0.92768 0.88443 0.87741 0.85020 0.87883 0.87743 0.87681 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.24 6.72 -35.23 -0.24 -6.47 16 3 C 0.02 0.35 5.75 37.16 0.21 0.57 16 4 C 0.07 1.28 5.46 -3.83 -0.02 1.26 16 5 N -0.53 -10.79 4.74 -237.51 -1.13 -11.91 16 6 C 0.19 4.55 4.45 -4.97 -0.02 4.53 16 7 C -0.51 -13.42 8.55 -34.44 -0.29 -13.72 16 8 H 0.06 1.66 7.10 -52.49 -0.37 1.29 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -25.27 13.29 55.43 0.74 -24.53 16 11 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.13 2.29 5.06 -4.98 -0.03 2.26 16 16 C 0.22 3.81 6.64 -13.06 -0.09 3.72 16 17 N -0.46 -8.02 10.20 -9.87 -0.10 -8.12 16 18 C 0.19 2.99 7.74 -156.38 -1.21 1.78 16 19 C -0.07 -0.85 6.33 -91.77 -0.58 -1.44 16 20 C -0.16 -1.61 10.14 -26.73 -0.27 -1.88 16 21 C -0.16 -1.54 10.23 -26.73 -0.27 -1.82 16 22 N -0.40 -6.82 11.76 30.90 0.36 -6.45 16 23 O 0.08 1.36 11.31 18.10 0.20 1.57 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.41 5.81 -51.93 -0.30 1.11 16 29 H 0.06 1.15 6.41 -51.93 -0.33 0.82 16 30 H 0.10 1.93 6.92 -51.92 -0.36 1.57 16 31 H 0.04 0.89 8.02 -51.93 -0.42 0.48 16 32 H 0.01 0.14 5.77 -51.93 -0.30 -0.16 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.10 1.60 8.06 -51.93 -0.42 1.18 16 35 H 0.11 1.87 5.33 -51.93 -0.28 1.59 16 36 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.10 1.16 7.91 -51.93 -0.41 0.75 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -29.05 330.50 -7.46 -36.51 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.71 Total: 0.33 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.56 Total: -1.72 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.13 Total: -51.02 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.03 Total: -4.91 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.05 -7.46 -36.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610392007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.322 kcal (2) G-P(sol) polarization free energy of solvation -29.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds