Wall clock time and date at job start Tue Mar 31 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99908 * 2 1 4 4 C 1.52997 * 109.47180 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47385 * 68.29779 * 4 3 2 6 6 C 1.46910 * 110.99866 * 57.71510 * 5 4 3 7 7 C 1.50698 * 109.47108 * 66.04478 * 6 5 4 8 8 H 1.07996 * 120.00254 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99687 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99855 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99920 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47108 * 59.99638 * 11 9 7 13 13 H 1.48498 * 109.47026 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46853 * 299.99585 * 11 9 7 15 15 C 1.46898 * 111.00186 * 293.75917 * 5 4 3 16 16 C 1.50703 * 109.46845 * 300.44890 * 15 5 4 17 17 N 1.31130 * 126.55136 * 96.02653 * 16 15 5 18 18 C 1.34490 * 105.61527 * 179.97438 * 17 16 15 19 19 C 1.50692 * 126.29091 * 179.73291 * 18 17 16 20 20 C 1.53005 * 117.50259 * 188.62199 * 19 18 17 21 21 C 1.53002 * 60.00004 * 252.51022 * 20 19 18 22 22 N 1.29952 * 107.42377 * 0.02562 * 18 17 16 23 23 O 1.21299 * 110.25224 * 359.97438 * 22 18 17 24 24 H 1.09000 * 109.46902 * 299.99458 * 1 2 3 25 25 H 1.08997 * 109.47040 * 60.00305 * 1 2 3 26 26 H 1.08994 * 109.46689 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47263 * 60.00188 * 3 2 1 28 28 H 1.09004 * 109.47302 * 299.99919 * 3 2 1 29 29 H 1.08996 * 109.47322 * 308.29723 * 4 3 2 30 30 H 1.09008 * 109.47173 * 188.30190 * 4 3 2 31 31 H 1.08996 * 109.46941 * 186.05241 * 6 5 4 32 32 H 1.09005 * 109.46793 * 306.04192 * 6 5 4 33 33 H 0.97004 * 119.99691 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.47002 * 180.44952 * 15 5 4 35 35 H 1.09000 * 109.46854 * 60.44482 * 15 5 4 36 36 H 1.09002 * 115.54680 * 334.33213 * 19 18 17 37 37 H 1.08993 * 117.49772 * 0.02562 * 20 19 18 38 38 H 1.08996 * 117.49418 * 145.02025 * 20 19 18 39 39 H 1.08999 * 117.49947 * 252.50958 * 21 20 19 40 40 H 1.09000 * 117.51651 * 107.47862 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9827 0.6357 -1.2877 6 6 3.5321 1.4776 -2.4042 7 6 4.2152 2.8187 -2.3296 8 1 4.9138 3.0253 -1.5324 9 6 3.9475 3.7824 -3.2786 10 7 3.0963 3.5310 -4.2491 11 14 4.7948 5.4447 -3.1866 12 1 6.2652 5.2561 -3.2717 13 1 4.3392 6.2956 -4.3152 14 1 4.4537 6.1036 -1.9002 15 6 3.5264 -0.7504 -1.4560 16 6 4.0783 -1.5998 -0.3401 17 7 3.4655 -1.9197 0.7742 18 6 4.3353 -2.6830 1.4594 19 6 4.1053 -3.2996 2.8151 20 6 5.3007 -3.9639 3.5011 21 6 4.1774 -4.8243 2.9191 22 7 5.4129 -2.7861 0.7405 23 8 5.2857 -2.1711 -0.2973 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8477 0.5210 0.8056 30 1 3.9780 2.1698 0.1477 31 1 3.7830 0.9939 -3.3482 32 1 2.4526 1.6156 -2.3425 33 1 2.9082 4.2089 -4.9170 34 1 3.8780 -1.1350 -2.4134 35 1 2.4371 -0.7799 -1.4304 36 1 3.3827 -2.7855 3.4488 37 1 6.2536 -3.9546 2.9721 38 1 5.3648 -3.8867 4.5864 39 1 3.5025 -5.3133 3.6216 40 1 4.3909 -5.3815 2.0069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610392007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:10 Heat of formation + Delta-G solvation = 47.186547 kcal Electronic energy + Delta-G solvation = -22694.587891 eV Core-core repulsion = 19320.852412 eV Total energy + Delta-G solvation = -3373.735480 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.49532 -39.90067 -38.60823 -37.53228 -36.17125 -34.73127 -33.28319 -30.71524 -29.68361 -27.43843 -26.42114 -26.15214 -24.79713 -24.10443 -23.32597 -21.97044 -20.81298 -19.05841 -18.59218 -18.34187 -17.55187 -17.41432 -16.77146 -16.60072 -16.21922 -15.71249 -15.67586 -15.29227 -14.89996 -14.27689 -13.95682 -13.34867 -13.26543 -13.22147 -13.06143 -13.00778 -12.85083 -12.77608 -12.51272 -12.48002 -12.44381 -12.00116 -11.91843 -11.86810 -11.61876 -11.48455 -11.30788 -10.65566 -10.58421 -10.35079 -9.02813 -8.16150 -6.24308 0.14597 1.21946 1.45511 1.47379 1.54775 1.89190 2.43692 2.58045 2.81360 2.90473 3.15805 3.18178 3.40817 3.77696 3.84893 3.99924 4.14816 4.25611 4.29601 4.40699 4.53005 4.55276 4.59895 4.67783 4.68978 4.73744 4.82938 4.90304 4.92992 5.03396 5.07457 5.09774 5.16851 5.26977 5.34651 5.67394 6.03499 6.20700 6.32085 6.50103 6.89065 7.22920 7.44373 8.94085 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.004379 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.646788 B = 6392.351311 C = 6965.809460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.381 6.381 3 C 0.032 3.968 4 C 0.071 3.929 5 N -0.534 5.534 6 C 0.207 3.793 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.011 3.989 10 N -0.929 5.929 11 Si 0.960 3.040 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.268 1.268 15 C 0.134 3.866 16 C 0.214 3.786 17 N -0.468 5.468 18 C 0.190 3.810 19 C -0.098 4.098 20 C -0.151 4.151 21 C -0.143 4.143 22 N -0.410 5.410 23 O 0.060 5.940 24 H 0.047 0.953 25 H 0.033 0.967 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.013 0.987 32 H -0.007 1.007 33 H 0.264 0.736 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.145 0.855 37 H 0.087 0.913 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.722 -12.193 13.244 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.301 6.301 3 C -0.046 4.046 4 C -0.057 4.057 5 N -0.260 5.260 6 C 0.082 3.918 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.188 4.188 10 N -0.569 5.569 11 Si 0.785 3.215 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.193 1.193 15 C 0.005 3.995 16 C -0.007 4.007 17 N -0.202 5.202 18 C -0.082 4.082 19 C -0.117 4.117 20 C -0.188 4.188 21 C -0.181 4.181 22 N -0.122 5.122 23 O 0.007 5.993 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.114 0.886 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.032 0.968 32 H 0.010 0.990 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.162 0.838 37 H 0.105 0.895 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.801 -12.728 13.583 18.701 hybrid contribution -0.713 1.474 -0.700 1.781 sum -2.514 -11.254 12.883 17.289 Atomic orbital electron populations 1.22815 0.80997 1.03167 0.99930 1.88021 1.20209 1.26935 1.94886 1.23138 0.95522 0.85458 1.00442 1.22096 0.91526 1.00743 0.91354 1.62285 1.59568 1.00220 1.03898 1.19489 0.93604 0.91138 0.87563 1.21356 1.25065 0.98133 1.11403 0.92116 1.25720 0.95862 1.02306 0.94903 1.70047 1.35881 1.35922 1.15067 0.85577 0.78919 0.79248 0.77719 1.19802 1.21091 1.19350 1.20892 1.00202 0.86952 0.91447 1.28812 0.81326 0.94336 0.96223 1.72058 1.29788 1.14781 1.03611 1.25502 0.85988 0.97072 0.99642 1.20278 1.05842 0.96903 0.88709 1.23136 0.92651 1.01275 1.01768 1.23147 1.01956 0.89494 1.03478 1.74518 1.23863 1.17531 0.96314 1.85284 1.34692 1.47939 1.31434 0.93449 0.94833 0.88606 0.92466 0.93668 0.91871 0.89640 0.96850 0.98974 0.92729 0.87521 0.87580 0.83762 0.89491 0.84877 0.84663 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.38 -12.51 6.72 -148.98 -1.00 -13.51 16 3 C 0.03 1.15 5.75 71.98 0.41 1.56 16 4 C 0.07 2.74 5.46 86.30 0.47 3.21 16 5 N -0.53 -22.24 4.74 -905.35 -4.30 -26.53 16 6 C 0.21 10.16 4.45 85.55 0.38 10.54 16 7 C -0.52 -27.79 8.55 25.60 0.22 -27.57 16 8 H 0.06 3.21 7.10 -2.91 -0.02 3.19 16 9 C 0.01 0.58 5.46 84.65 0.46 1.05 16 10 N -0.93 -53.03 13.29 21.45 0.28 -52.75 16 11 Si 0.96 42.73 29.54 68.60 2.03 44.76 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 14 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 15 C 0.13 4.81 5.06 85.56 0.43 5.24 16 16 C 0.21 7.50 6.64 88.38 0.59 8.09 16 17 N -0.47 -15.91 10.20 -303.18 -3.09 -19.00 16 18 C 0.19 5.92 7.74 138.46 1.07 6.99 16 19 C -0.10 -2.16 6.33 -11.54 -0.07 -2.23 16 20 C -0.15 -2.61 10.14 30.60 0.31 -2.30 16 21 C -0.14 -2.36 10.23 30.60 0.31 -2.05 16 22 N -0.41 -13.94 11.76 -60.31 -0.71 -14.65 16 23 O 0.06 2.16 11.31 74.83 0.85 3.01 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.84 5.81 -2.38 -0.01 1.82 16 29 H 0.06 2.39 6.41 -2.39 -0.02 2.37 16 30 H 0.09 3.44 6.92 -2.38 -0.02 3.42 16 31 H 0.01 0.71 8.02 -2.39 -0.02 0.69 16 32 H -0.01 -0.37 5.77 -2.38 -0.01 -0.39 16 33 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.11 3.56 8.06 -2.39 -0.02 3.54 16 35 H 0.11 3.81 5.33 -2.39 -0.01 3.80 16 36 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.09 1.82 7.91 -2.39 -0.02 1.80 16 38 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -62.04 330.50 0.94 -61.10 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 1.04 Total: 13.11 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.84 Total: 4.46 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -7.81 Total: -112.93 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.15 Total: -10.50 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -62.04 0.94 -61.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610392007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.284 kcal (2) G-P(sol) polarization free energy of solvation -62.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds