Wall clock time and date at job start Tue Mar 31 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45193 * 109.47395 * 2 1 4 4 C 1.34759 * 116.99936 * 180.02562 * 3 2 1 5 5 O 1.21525 * 120.00061 * 0.02562 * 4 3 2 6 6 C 1.47284 * 119.99677 * 180.02562 * 4 3 2 7 7 C 1.41346 * 126.43140 * 359.97140 * 6 4 3 8 8 N 1.30431 * 108.01439 * 179.77774 * 7 6 4 9 9 N 1.39925 * 108.91598 * 0.38625 * 8 7 6 10 10 C 1.46505 * 125.74210 * 179.87145 * 9 8 7 11 11 N 1.46901 * 109.46921 * 274.69005 * 10 9 8 12 12 C 1.46901 * 110.99975 * 66.04827 * 11 10 9 13 13 C 1.46903 * 110.99790 * 189.99774 * 11 10 9 14 14 H 1.08996 * 109.47031 * 55.00311 * 13 11 10 15 15 C 1.52999 * 109.47184 * 295.00231 * 13 11 10 16 16 C 1.50697 * 109.47058 * 175.00065 * 13 11 10 17 17 H 1.07999 * 120.00400 * 0.02562 * 16 13 11 18 18 C 1.37881 * 120.00334 * 179.97438 * 16 13 11 19 19 N 1.31515 * 119.99425 * 0.02562 * 18 16 13 20 20 Si 1.86791 * 120.00403 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.47082 * 60.00040 * 20 18 16 22 22 H 1.48500 * 109.47458 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47196 * 300.00538 * 20 18 16 24 24 C 1.34224 * 108.51852 * 359.60626 * 9 8 7 25 25 H 1.09001 * 109.46709 * 299.99833 * 1 2 3 26 26 H 1.08994 * 109.46999 * 59.99512 * 1 2 3 27 27 H 1.08994 * 109.47048 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46709 * 240.00166 * 2 1 3 29 29 H 1.08999 * 109.46543 * 120.00555 * 2 1 3 30 30 H 1.08001 * 125.99312 * 359.97438 * 7 6 4 31 31 H 1.09002 * 109.47068 * 34.69191 * 10 9 8 32 32 H 1.09001 * 109.47372 * 154.69278 * 10 9 8 33 33 H 1.09001 * 109.47121 * 59.99638 * 12 11 10 34 34 H 1.09005 * 109.47342 * 179.97438 * 12 11 10 35 35 H 1.08999 * 109.46894 * 299.99652 * 12 11 10 36 36 H 1.09004 * 109.47302 * 180.02562 * 15 13 11 37 37 H 1.09005 * 109.46983 * 300.00008 * 15 13 11 38 38 H 1.08995 * 109.47368 * 60.00024 * 15 13 11 39 39 H 0.97001 * 119.99754 * 179.97438 * 19 18 16 40 40 H 1.08003 * 126.30175 * 180.22839 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3501 1.5454 -0.0005 5 8 4.0903 0.5816 -0.0015 6 6 3.9131 2.9064 0.0000 7 6 3.1830 4.1167 0.0005 8 7 4.0368 5.1027 0.0057 9 7 5.3344 4.5792 -0.0002 10 6 6.5730 5.3618 0.0002 11 7 6.9228 5.7256 -1.3794 12 6 5.9288 6.6448 -1.9495 13 6 8.2722 6.3024 -1.4456 14 1 8.9858 5.6093 -1.0002 15 6 8.2994 7.6258 -0.6783 16 6 8.6430 6.5488 -2.8853 17 1 7.9459 6.3020 -3.6724 18 6 9.8719 7.0903 -3.1978 19 7 10.7207 7.3912 -2.2394 20 14 10.3313 7.3964 -4.9823 21 1 9.3586 8.3404 -5.5889 22 1 11.6954 7.9793 -5.0494 23 1 10.3051 6.1121 -5.7275 24 6 5.2536 3.2394 -0.0004 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1070 4.2089 0.0002 31 1 6.4303 6.2674 0.5898 32 1 7.3776 4.7684 0.4346 33 1 5.8870 7.5531 -1.3484 34 1 6.2122 6.8983 -2.9711 35 1 4.9499 6.1653 -1.9520 36 1 9.3006 8.0540 -0.7278 37 1 7.5857 8.3188 -1.1238 38 1 8.0312 7.4476 0.3630 39 1 11.5854 7.7718 -2.4592 40 1 6.0839 2.5487 -0.0009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755276365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:33 Heat of formation + Delta-G solvation = 2.143269 kcal Electronic energy + Delta-G solvation = -21761.689716 eV Core-core repulsion = 18386.001013 eV Total energy + Delta-G solvation = -3375.688703 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30433 -39.89091 -37.37224 -36.43414 -33.35579 -32.10948 -31.67452 -30.27496 -28.69483 -26.89025 -25.31365 -24.63659 -23.39714 -22.42042 -20.94948 -20.24881 -19.56399 -17.89719 -16.83647 -16.55308 -16.29404 -15.82963 -15.49708 -14.75453 -14.46700 -14.23947 -13.88123 -13.66242 -13.45027 -13.07700 -12.93598 -12.74828 -12.65980 -12.06366 -11.82770 -11.76822 -11.36664 -11.23522 -11.08404 -10.91114 -10.81017 -10.69673 -10.60497 -10.22476 -10.18538 -10.10064 -9.52638 -9.08036 -8.73740 -8.51487 -7.51982 -6.14197 -4.18828 1.48171 2.18268 2.38424 2.87399 3.26568 3.31038 3.31119 3.34301 4.31355 4.59217 4.74807 4.75088 4.79033 4.87100 5.00764 5.08487 5.18374 5.23863 5.42436 5.51723 5.56601 5.63338 5.71596 5.81755 6.10996 6.26349 6.41640 6.48265 6.54445 6.61945 6.77150 6.83594 6.92204 7.19110 7.53236 7.62993 7.67423 7.85105 7.92392 8.15369 8.33071 8.85440 9.46780 10.92846 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030962 B = 0.003204 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.103962 B = 8736.068055 C = 9027.215779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.356 6.356 4 C 0.549 3.451 5 O -0.527 6.527 6 C -0.301 4.301 7 C 0.095 3.905 8 N -0.295 5.295 9 N -0.335 5.335 10 C 0.287 3.713 11 N -0.547 5.547 12 C 0.035 3.965 13 C 0.217 3.783 14 H 0.044 0.956 15 C -0.176 4.176 16 C -0.504 4.504 17 H 0.064 0.936 18 C 0.061 3.939 19 N -0.893 5.893 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.160 3.840 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.192 0.808 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.022 0.978 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.035 0.965 38 H 0.007 0.993 39 H 0.263 0.737 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.489 -9.093 6.380 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.274 6.274 4 C 0.396 3.604 5 O -0.417 6.417 6 C -0.314 4.314 7 C -0.094 4.094 8 N -0.114 5.114 9 N -0.112 5.112 10 C 0.077 3.923 11 N -0.272 5.272 12 C -0.113 4.113 13 C 0.111 3.889 14 H 0.062 0.938 15 C -0.235 4.235 16 C -0.543 4.543 17 H 0.082 0.918 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.728 3.272 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.201 1.201 24 C 0.005 3.995 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.208 0.792 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.054 0.946 38 H 0.026 0.974 39 H 0.073 0.927 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -14.797 -8.343 6.125 18.058 hybrid contribution 0.290 -0.122 -0.505 0.595 sum -14.507 -8.465 5.620 17.711 Atomic orbital electron populations 1.21801 0.92786 1.02796 1.03529 1.22964 0.95107 0.80400 1.02532 1.86531 1.24127 1.31896 1.84801 1.19992 0.80086 0.88460 0.71896 1.90825 1.60376 1.42442 1.48025 1.19191 0.92602 0.91380 1.28265 1.24088 1.00031 0.88772 0.96488 1.77230 0.87254 1.22933 1.24005 1.48959 1.06554 1.04311 1.51414 1.22408 0.80525 0.95059 0.94324 1.62362 1.05860 1.44914 1.14086 1.22272 0.94216 0.93892 1.00967 1.19330 0.81676 0.90683 0.97167 0.93830 1.22469 1.04397 1.01335 0.95294 1.20992 1.00885 1.41302 0.91108 0.91813 1.24911 0.96170 0.95358 0.97649 1.69856 1.08158 1.43480 1.31697 0.86519 0.77441 0.78604 0.84637 1.20278 1.21281 1.20131 1.22974 0.97616 0.86208 0.92674 0.91513 0.91443 0.90402 0.91309 0.91380 0.79169 0.91189 0.87541 0.95919 0.90422 0.93067 0.88838 0.94632 0.97359 0.92724 0.79435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 37.16 0.38 -0.60 16 2 C 0.06 0.60 6.20 37.16 0.23 0.83 16 3 O -0.36 -4.34 10.07 -40.65 -0.41 -4.75 16 4 C 0.55 7.89 7.95 34.41 0.27 8.16 16 5 O -0.53 -8.71 16.69 -19.29 -0.32 -9.03 16 6 C -0.30 -4.31 6.13 -105.08 -0.64 -4.95 16 7 C 0.09 1.28 11.87 -16.97 -0.20 1.08 16 8 N -0.29 -4.67 11.18 30.87 0.35 -4.32 16 9 N -0.34 -5.31 3.40 -63.80 -0.22 -5.53 16 10 C 0.29 4.78 5.56 -63.31 -0.35 4.43 16 11 N -0.55 -11.04 4.88 -240.19 -1.17 -12.22 16 12 C 0.03 0.68 8.62 60.07 0.52 1.20 16 13 C 0.22 5.04 2.34 -68.86 -0.16 4.88 16 14 H 0.04 1.09 8.03 -51.93 -0.42 0.67 16 15 C -0.18 -3.93 8.27 37.16 0.31 -3.62 16 16 C -0.50 -13.13 7.89 -34.44 -0.27 -13.40 16 17 H 0.06 1.69 6.77 -52.49 -0.36 1.33 16 18 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 19 N -0.89 -24.24 11.32 55.43 0.63 -23.61 16 20 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C 0.16 2.34 11.29 -16.55 -0.19 2.15 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.19 1.95 8.06 -52.49 -0.42 1.52 16 31 H 0.07 1.17 6.94 -51.93 -0.36 0.81 16 32 H 0.11 1.59 7.98 -51.93 -0.41 1.17 16 33 H 0.02 0.44 6.51 -51.93 -0.34 0.10 16 34 H 0.08 1.64 6.41 -51.93 -0.33 1.30 16 35 H 0.05 0.97 6.61 -51.93 -0.34 0.62 16 36 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 37 H 0.03 0.79 6.47 -51.93 -0.34 0.45 16 38 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16 39 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.19 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -29.45 333.76 -7.00 -36.45 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.66 Total: 0.58 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -0.20 Total: 1.68 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.42 Total: -45.68 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.73 Total: -13.78 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.45 -7.00 -36.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755276365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.591 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds