Wall clock time and date at job start Tue Mar 31 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45193 * 109.47395 * 2 1 4 4 C 1.34759 * 116.99936 * 180.02562 * 3 2 1 5 5 O 1.21525 * 120.00061 * 0.02562 * 4 3 2 6 6 C 1.47284 * 119.99677 * 180.02562 * 4 3 2 7 7 C 1.41346 * 126.43140 * 359.97140 * 6 4 3 8 8 N 1.30431 * 108.01439 * 179.77774 * 7 6 4 9 9 N 1.39925 * 108.91598 * 0.38625 * 8 7 6 10 10 C 1.46505 * 125.74210 * 179.87145 * 9 8 7 11 11 N 1.46901 * 109.46921 * 274.69005 * 10 9 8 12 12 C 1.46901 * 110.99975 * 66.04827 * 11 10 9 13 13 C 1.46903 * 110.99790 * 189.99774 * 11 10 9 14 14 H 1.08996 * 109.47031 * 55.00311 * 13 11 10 15 15 C 1.52999 * 109.47184 * 295.00231 * 13 11 10 16 16 C 1.50697 * 109.47058 * 175.00065 * 13 11 10 17 17 H 1.07999 * 120.00400 * 0.02562 * 16 13 11 18 18 C 1.37881 * 120.00334 * 179.97438 * 16 13 11 19 19 N 1.31515 * 119.99425 * 0.02562 * 18 16 13 20 20 Si 1.86791 * 120.00403 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.47082 * 60.00040 * 20 18 16 22 22 H 1.48500 * 109.47458 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47196 * 300.00538 * 20 18 16 24 24 C 1.34224 * 108.51852 * 359.60626 * 9 8 7 25 25 H 1.09001 * 109.46709 * 299.99833 * 1 2 3 26 26 H 1.08994 * 109.46999 * 59.99512 * 1 2 3 27 27 H 1.08994 * 109.47048 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46709 * 240.00166 * 2 1 3 29 29 H 1.08999 * 109.46543 * 120.00555 * 2 1 3 30 30 H 1.08001 * 125.99312 * 359.97438 * 7 6 4 31 31 H 1.09002 * 109.47068 * 34.69191 * 10 9 8 32 32 H 1.09001 * 109.47372 * 154.69278 * 10 9 8 33 33 H 1.09001 * 109.47121 * 59.99638 * 12 11 10 34 34 H 1.09005 * 109.47342 * 179.97438 * 12 11 10 35 35 H 1.08999 * 109.46894 * 299.99652 * 12 11 10 36 36 H 1.09004 * 109.47302 * 180.02562 * 15 13 11 37 37 H 1.09005 * 109.46983 * 300.00008 * 15 13 11 38 38 H 1.08995 * 109.47368 * 60.00024 * 15 13 11 39 39 H 0.97001 * 119.99754 * 179.97438 * 19 18 16 40 40 H 1.08003 * 126.30175 * 180.22839 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3501 1.5454 -0.0005 5 8 4.0903 0.5816 -0.0015 6 6 3.9131 2.9064 0.0000 7 6 3.1830 4.1167 0.0005 8 7 4.0368 5.1027 0.0057 9 7 5.3344 4.5792 -0.0002 10 6 6.5730 5.3618 0.0002 11 7 6.9228 5.7256 -1.3794 12 6 5.9288 6.6448 -1.9495 13 6 8.2722 6.3024 -1.4456 14 1 8.9858 5.6093 -1.0002 15 6 8.2994 7.6258 -0.6783 16 6 8.6430 6.5488 -2.8853 17 1 7.9459 6.3020 -3.6724 18 6 9.8719 7.0903 -3.1978 19 7 10.7207 7.3912 -2.2394 20 14 10.3313 7.3964 -4.9823 21 1 9.3586 8.3404 -5.5889 22 1 11.6954 7.9793 -5.0494 23 1 10.3051 6.1121 -5.7275 24 6 5.2536 3.2394 -0.0004 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1070 4.2089 0.0002 31 1 6.4303 6.2674 0.5898 32 1 7.3776 4.7684 0.4346 33 1 5.8870 7.5531 -1.3484 34 1 6.2122 6.8983 -2.9711 35 1 4.9499 6.1653 -1.9520 36 1 9.3006 8.0540 -0.7278 37 1 7.5857 8.3188 -1.1238 38 1 8.0312 7.4476 0.3630 39 1 11.5854 7.7718 -2.4592 40 1 6.0839 2.5487 -0.0009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755276365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:33 Heat of formation + Delta-G solvation = -15.405817 kcal Electronic energy + Delta-G solvation = -21762.450702 eV Core-core repulsion = 18386.001013 eV Total energy + Delta-G solvation = -3376.449688 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.45389 -40.95869 -38.98586 -37.48731 -35.07559 -33.45814 -32.55418 -31.40819 -30.41145 -28.32935 -27.21690 -25.92719 -24.59883 -23.31885 -22.23184 -21.35037 -21.18283 -19.06927 -18.22808 -17.85471 -17.54386 -17.29812 -16.78241 -16.40266 -15.78679 -15.41029 -15.29899 -14.88517 -14.57001 -14.45775 -14.31420 -13.91250 -13.54076 -13.49409 -13.03588 -12.95562 -12.83618 -12.69382 -12.68305 -12.48798 -12.42423 -12.17295 -12.02869 -11.93222 -11.44798 -11.35886 -11.05013 -10.68859 -10.51811 -9.91851 -9.11985 -8.14408 -6.24592 0.33552 1.05818 1.24596 1.43240 1.44087 1.51425 1.87156 2.20814 2.41475 3.15577 3.24957 3.47869 3.76251 3.98013 4.06787 4.08889 4.16565 4.19308 4.42373 4.44019 4.49460 4.58370 4.66257 4.74931 4.85103 4.96861 5.00052 5.03309 5.12047 5.20960 5.43247 5.44282 5.52112 5.58212 5.65449 5.80870 6.04439 6.34103 6.51326 6.54877 6.84474 6.85189 7.44182 8.91113 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030962 B = 0.003204 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.103962 B = 8736.068055 C = 9027.215779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 O -0.354 6.354 4 C 0.553 3.447 5 O -0.554 6.554 6 C -0.308 4.308 7 C 0.108 3.892 8 N -0.321 5.321 9 N -0.345 5.345 10 C 0.292 3.708 11 N -0.557 5.557 12 C 0.047 3.953 13 C 0.223 3.777 14 H 0.025 0.975 15 C -0.163 4.163 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.018 3.982 19 N -0.915 5.915 20 Si 0.955 3.045 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.275 1.275 24 C 0.157 3.843 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.223 0.777 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.023 0.977 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.066 -9.685 6.536 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.271 6.271 4 C 0.400 3.600 5 O -0.446 6.446 6 C -0.321 4.321 7 C -0.080 4.080 8 N -0.140 5.140 9 N -0.122 5.122 10 C 0.082 3.918 11 N -0.282 5.282 12 C -0.101 4.101 13 C 0.117 3.883 14 H 0.043 0.957 15 C -0.222 4.222 16 C -0.557 4.557 17 H 0.072 0.928 18 C -0.181 4.181 19 N -0.555 5.555 20 Si 0.781 3.219 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.200 1.200 24 C 0.003 3.997 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.239 0.761 31 H 0.091 0.909 32 H 0.141 0.859 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -16.412 -8.941 6.288 19.719 hybrid contribution 0.660 -0.036 -0.514 0.838 sum -15.752 -8.976 5.773 19.027 Atomic orbital electron populations 1.21820 0.90252 1.04342 1.03786 1.23293 0.97053 0.79016 1.02523 1.86527 1.22711 1.33674 1.84180 1.19992 0.80676 0.88062 0.71248 1.90812 1.61161 1.43204 1.49416 1.19326 0.92707 0.91800 1.28258 1.24597 1.01192 0.87802 0.94394 1.77215 0.87410 1.23957 1.25409 1.48796 1.06365 1.04554 1.52512 1.22359 0.81563 0.95684 0.92175 1.62198 1.04634 1.44654 1.16730 1.22115 0.94281 0.93928 0.99775 1.19057 0.82952 0.90661 0.95657 0.95730 1.22267 1.02614 1.00534 0.96772 1.21262 1.00867 1.41145 0.92442 0.92811 1.25575 0.96262 0.95346 1.00958 1.69962 1.08332 1.44056 1.33111 0.85655 0.77182 0.78368 0.80673 1.19936 1.20922 1.20047 1.23306 0.98480 0.85965 0.91954 0.91085 0.91308 0.88214 0.91578 0.91249 0.76074 0.90912 0.85913 0.95865 0.92382 0.92250 0.91476 0.95014 0.94785 0.92792 0.78108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.29 71.99 0.74 -0.77 16 2 C 0.05 0.94 6.20 71.99 0.45 1.38 16 3 O -0.35 -8.01 10.07 -56.70 -0.57 -8.58 16 4 C 0.55 15.15 7.95 70.20 0.56 15.71 16 5 O -0.55 -17.87 16.69 19.76 0.33 -17.54 16 6 C -0.31 -8.32 6.13 -20.16 -0.12 -8.44 16 7 C 0.11 2.70 11.87 85.67 1.02 3.72 16 8 N -0.32 -9.60 11.18 -56.24 -0.63 -10.23 16 9 N -0.35 -10.47 3.40 -355.75 -1.21 -11.68 16 10 C 0.29 9.40 5.56 170.80 0.95 10.35 16 11 N -0.56 -22.20 4.88 -913.82 -4.46 -26.66 16 12 C 0.05 1.84 8.62 127.69 1.10 2.94 16 13 C 0.22 10.40 2.34 44.17 0.10 10.50 16 14 H 0.02 1.24 8.03 -2.39 -0.02 1.22 16 15 C -0.16 -7.22 8.27 71.98 0.60 -6.62 16 16 C -0.52 -27.20 7.89 25.60 0.20 -27.00 16 17 H 0.05 2.87 6.77 -2.91 -0.02 2.85 16 18 C 0.02 0.95 5.30 84.66 0.45 1.40 16 19 N -0.92 -50.01 11.32 21.45 0.24 -49.77 16 20 Si 0.96 42.56 29.54 68.60 2.03 44.59 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 C 0.16 4.38 11.29 84.30 0.95 5.33 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 30 H 0.22 3.85 8.06 -2.91 -0.02 3.82 16 31 H 0.07 2.31 6.94 -2.39 -0.02 2.30 16 32 H 0.12 3.50 7.98 -2.39 -0.02 3.48 16 33 H 0.02 0.88 6.51 -2.39 -0.02 0.87 16 34 H 0.06 2.46 6.41 -2.38 -0.02 2.44 16 35 H 0.06 2.19 6.61 -2.39 -0.02 2.18 16 36 H 0.07 3.37 6.07 -2.39 -0.01 3.35 16 37 H 0.03 1.39 6.47 -2.38 -0.02 1.37 16 38 H 0.03 1.29 6.75 -2.39 -0.02 1.27 16 39 H 0.26 13.80 8.31 -92.71 -0.77 13.02 16 40 H 0.20 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -62.18 333.76 3.76 -58.42 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.04 Total: 12.94 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 6.99 Total: 8.50 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -6.06 Total: -98.33 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.24 Total: -26.12 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -62.18 3.76 -58.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755276365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.016 kcal (2) G-P(sol) polarization free energy of solvation -62.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds