Wall clock time and date at job start Tue Mar 31 2020 05:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47066 * 2 1 4 4 C 1.53005 * 110.65643 * 62.08702 * 3 2 1 5 5 N 1.47313 * 110.59911 * 299.17551 * 3 2 1 6 6 C 1.34534 * 106.61709 * 241.25281 * 5 3 2 7 7 O 1.21534 * 123.76935 * 180.21090 * 6 5 3 8 8 N 1.33790 * 112.45976 * 0.38046 * 6 5 3 9 9 N 1.40097 * 124.18069 * 179.86682 * 8 6 5 10 10 C 1.28002 * 120.00306 * 174.25603 * 9 8 6 11 11 C 1.50698 * 120.00331 * 185.06270 * 10 9 8 12 12 H 1.09000 * 109.46699 * 0.02562 * 11 10 9 13 13 C 1.53005 * 109.47158 * 119.99781 * 11 10 9 14 14 C 1.53001 * 109.47200 * 240.00068 * 11 10 9 15 15 C 1.50699 * 109.47137 * 174.99683 * 14 11 10 16 16 H 1.08002 * 119.99909 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00080 * 179.97438 * 15 14 11 18 18 N 1.31509 * 120.00024 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00208 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46673 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47006 * 120.00334 * 19 17 15 22 22 H 1.48498 * 109.47007 * 240.00781 * 19 17 15 23 23 C 1.34773 * 111.64437 * 359.59626 * 8 6 5 24 24 O 1.21237 * 127.15875 * 180.26050 * 23 8 6 25 25 H 1.08998 * 109.47423 * 59.99937 * 1 2 3 26 26 H 1.09004 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47396 * 299.99693 * 1 2 3 28 28 H 1.09000 * 109.46981 * 240.00120 * 2 1 3 29 29 H 1.08998 * 109.47423 * 120.00063 * 2 1 3 30 30 H 1.09000 * 109.47048 * 182.21459 * 4 3 2 31 31 H 1.08996 * 109.47008 * 302.21226 * 4 3 2 32 32 H 1.09005 * 109.46916 * 62.21549 * 4 3 2 33 33 H 0.96996 * 126.69179 * 61.43723 * 5 3 2 34 34 H 1.07999 * 119.99968 * 5.05837 * 10 9 8 35 35 H 1.09005 * 109.46648 * 180.02562 * 13 11 10 36 36 H 1.08998 * 109.47048 * 300.00217 * 13 11 10 37 37 H 1.08991 * 109.46817 * 60.00462 * 13 11 10 38 38 H 1.09002 * 109.47237 * 294.99557 * 14 11 10 39 39 H 1.09002 * 109.47187 * 54.99663 * 14 11 10 40 40 H 0.96999 * 120.00396 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5879 2.1748 1.2651 5 7 1.5789 2.1552 -1.2040 6 6 2.6826 2.5242 -1.8790 7 8 2.6596 3.1400 -2.9265 8 7 3.8083 2.1342 -1.2701 9 7 5.0963 2.3860 -1.7605 10 6 6.1206 2.0734 -1.0595 11 6 7.5012 2.4467 -1.5343 12 1 7.4280 2.9739 -2.4855 13 6 8.1687 3.3541 -0.4989 14 6 8.3381 1.1789 -1.7164 15 6 9.6763 1.5409 -2.3073 16 1 9.9067 2.5720 -2.5310 17 6 10.6066 0.5557 -2.5622 18 7 10.3259 -0.7000 -2.2903 19 14 12.2652 1.0043 -3.2953 20 1 12.3318 2.4726 -3.5073 21 1 13.3460 0.5892 -2.3654 22 1 12.4363 0.3078 -4.5957 23 6 3.5504 1.4742 -0.1237 24 8 4.3584 1.0041 0.6484 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.9277 3.2098 1.2268 31 1 0.5001 2.1517 1.3293 32 1 2.0141 1.6846 2.1405 33 1 0.6590 2.3275 -1.4589 34 1 5.9954 1.5421 -0.1275 35 1 9.1672 3.6245 -0.8427 36 1 7.5725 4.2573 -0.3693 37 1 8.2418 2.8273 0.4524 38 1 8.4860 0.6990 -0.7489 39 1 7.8186 0.4936 -2.3862 40 1 10.9804 -1.3931 -2.4693 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765995467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:23 Heat of formation + Delta-G solvation = -12.233684 kcal Electronic energy + Delta-G solvation = -22248.152155 eV Core-core repulsion = 18871.840021 eV Total energy + Delta-G solvation = -3376.312134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.66058 -38.87120 -37.68350 -36.56981 -35.29194 -33.43715 -32.30148 -30.93633 -29.88027 -27.02934 -26.10384 -24.58610 -23.64028 -22.72520 -21.05572 -20.50909 -19.22668 -17.83686 -17.01244 -16.95177 -16.42230 -15.94403 -15.82377 -15.27932 -14.56555 -14.47045 -14.30718 -13.61337 -13.49005 -13.22348 -13.01718 -12.80470 -12.65575 -12.48716 -12.06891 -11.85393 -11.74204 -11.59660 -11.35822 -11.22960 -10.92718 -10.82671 -10.54448 -10.43742 -10.03551 -9.76202 -9.70430 -9.24670 -9.04094 -8.92556 -8.37743 -6.01784 -4.04193 1.36365 1.75451 2.10229 2.85404 3.18222 3.32094 3.39872 3.43684 3.57290 4.07925 4.27675 4.44003 4.63426 4.75779 4.83771 4.99868 5.03655 5.23421 5.27951 5.34716 5.41551 5.45563 5.54053 5.63290 5.78950 5.92319 5.92842 6.06230 6.39119 6.55878 6.66352 6.84814 6.90272 6.93977 7.07356 7.60036 7.61059 7.74443 7.95743 8.30814 8.35795 9.00938 9.59713 11.09687 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028926 B = 0.003577 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.749102 B = 7825.158545 C = 8034.062180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.119 3.881 4 C -0.148 4.148 5 N -0.720 5.720 6 C 0.722 3.278 7 O -0.519 6.519 8 N -0.439 5.439 9 N -0.260 5.260 10 C 0.129 3.871 11 C -0.045 4.045 12 H 0.082 0.918 13 C -0.127 4.127 14 C 0.033 3.967 15 C -0.516 4.516 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.501 3.499 24 O -0.460 6.460 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.440 0.560 34 H 0.143 0.857 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.053 0.947 38 H 0.024 0.976 39 H 0.019 0.981 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.683 3.348 8.802 22.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C 0.027 3.973 4 C -0.206 4.206 5 N -0.387 5.387 6 C 0.423 3.577 7 O -0.389 6.389 8 N -0.266 5.266 9 N -0.060 5.060 10 C -0.083 4.083 11 C -0.067 4.067 12 H 0.100 0.900 13 C -0.185 4.185 14 C -0.005 4.005 15 C -0.554 4.554 16 H 0.079 0.921 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.211 1.211 23 C 0.286 3.714 24 O -0.331 6.331 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.285 0.715 34 H 0.160 0.840 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.037 0.963 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.533 3.660 7.768 22.256 hybrid contribution 0.586 -0.369 0.190 0.718 sum -19.947 3.291 7.958 21.726 Atomic orbital electron populations 1.21787 0.93988 1.02830 1.02225 1.21736 0.97507 0.91965 1.04500 1.21576 0.91482 0.95833 0.88411 1.22037 1.03089 1.00708 0.94743 1.45583 1.07911 1.60850 1.24368 1.15258 0.79667 0.79595 0.83209 1.91004 1.84982 1.42005 1.20895 1.47304 1.06778 1.50930 1.21621 1.75136 0.86428 1.21528 1.22911 1.27766 0.94551 0.89159 0.96835 1.20561 0.85920 1.00820 0.99352 0.89952 1.21668 1.01229 0.97215 0.98385 1.19148 0.93667 0.89936 0.97782 1.21174 0.98881 0.93766 1.41591 0.92072 1.25007 0.98702 0.94969 0.95706 1.69972 1.35214 0.99812 1.48317 0.86517 0.83908 0.78648 0.78829 1.19620 1.21051 1.21058 1.21654 0.91456 0.77115 0.81126 1.90735 1.53277 1.44188 1.44865 0.92411 0.91561 0.91789 0.90647 0.89066 0.91357 0.89907 0.89650 0.71453 0.84048 0.90275 0.94510 0.92785 0.95730 0.96262 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.48 37.15 0.35 -0.39 16 2 C -0.12 -0.90 5.28 -26.73 -0.14 -1.05 16 3 C 0.12 1.12 1.00 -132.09 -0.13 0.99 16 4 C -0.15 -0.99 8.73 37.16 0.32 -0.67 16 5 N -0.72 -7.10 5.51 -52.93 -0.29 -7.39 16 6 C 0.72 11.21 8.77 -88.01 -0.77 10.44 16 7 O -0.52 -9.93 17.91 5.34 0.10 -9.83 16 8 N -0.44 -7.42 3.66 -15.79 -0.06 -7.48 16 9 N -0.26 -5.16 11.36 32.67 0.37 -4.79 16 10 C 0.13 2.50 9.20 -13.88 -0.13 2.38 16 11 C -0.05 -0.93 2.75 -91.77 -0.25 -1.18 16 12 H 0.08 1.75 8.11 -51.93 -0.42 1.33 16 13 C -0.13 -2.27 8.99 37.16 0.33 -1.94 16 14 C 0.03 0.83 4.43 -27.88 -0.12 0.70 16 15 C -0.52 -14.05 8.41 -34.44 -0.29 -14.34 16 16 H 0.06 1.60 7.06 -52.49 -0.37 1.23 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.50 7.23 6.86 -10.55 -0.07 7.16 16 24 O -0.46 -7.56 15.07 5.59 0.08 -7.48 16 25 H 0.06 0.26 7.18 -51.93 -0.37 -0.11 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.23 6.53 -51.93 -0.34 -0.11 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.34 6.49 -51.93 -0.34 0.01 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.44 2.95 8.23 -40.82 -0.34 2.61 16 34 H 0.14 2.70 5.07 -52.49 -0.27 2.43 16 35 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -33.56 334.21 -5.79 -39.35 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.74 Total: -1.63 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.00 Total: 3.64 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.76 Total: -45.42 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.18 Total: -17.31 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.56 -5.79 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765995467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.117 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds