Wall clock time and date at job start Tue Mar 31 2020 05:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47066 * 2 1 4 4 C 1.53005 * 110.65643 * 62.08702 * 3 2 1 5 5 N 1.47313 * 110.59911 * 299.17551 * 3 2 1 6 6 C 1.34534 * 106.61709 * 241.25281 * 5 3 2 7 7 O 1.21534 * 123.76935 * 180.21090 * 6 5 3 8 8 N 1.33790 * 112.45976 * 0.38046 * 6 5 3 9 9 N 1.40097 * 124.18069 * 179.86682 * 8 6 5 10 10 C 1.28002 * 120.00306 * 174.25603 * 9 8 6 11 11 C 1.50698 * 120.00331 * 185.06270 * 10 9 8 12 12 H 1.09000 * 109.46699 * 0.02562 * 11 10 9 13 13 C 1.53005 * 109.47158 * 119.99781 * 11 10 9 14 14 C 1.53001 * 109.47200 * 240.00068 * 11 10 9 15 15 C 1.50699 * 109.47137 * 174.99683 * 14 11 10 16 16 H 1.08002 * 119.99909 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00080 * 179.97438 * 15 14 11 18 18 N 1.31509 * 120.00024 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00208 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46673 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47006 * 120.00334 * 19 17 15 22 22 H 1.48498 * 109.47007 * 240.00781 * 19 17 15 23 23 C 1.34773 * 111.64437 * 359.59626 * 8 6 5 24 24 O 1.21237 * 127.15875 * 180.26050 * 23 8 6 25 25 H 1.08998 * 109.47423 * 59.99937 * 1 2 3 26 26 H 1.09004 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47396 * 299.99693 * 1 2 3 28 28 H 1.09000 * 109.46981 * 240.00120 * 2 1 3 29 29 H 1.08998 * 109.47423 * 120.00063 * 2 1 3 30 30 H 1.09000 * 109.47048 * 182.21459 * 4 3 2 31 31 H 1.08996 * 109.47008 * 302.21226 * 4 3 2 32 32 H 1.09005 * 109.46916 * 62.21549 * 4 3 2 33 33 H 0.96996 * 126.69179 * 61.43723 * 5 3 2 34 34 H 1.07999 * 119.99968 * 5.05837 * 10 9 8 35 35 H 1.09005 * 109.46648 * 180.02562 * 13 11 10 36 36 H 1.08998 * 109.47048 * 300.00217 * 13 11 10 37 37 H 1.08991 * 109.46817 * 60.00462 * 13 11 10 38 38 H 1.09002 * 109.47237 * 294.99557 * 14 11 10 39 39 H 1.09002 * 109.47187 * 54.99663 * 14 11 10 40 40 H 0.96999 * 120.00396 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5879 2.1748 1.2651 5 7 1.5789 2.1552 -1.2040 6 6 2.6826 2.5242 -1.8790 7 8 2.6596 3.1400 -2.9265 8 7 3.8083 2.1342 -1.2701 9 7 5.0963 2.3860 -1.7605 10 6 6.1206 2.0734 -1.0595 11 6 7.5012 2.4467 -1.5343 12 1 7.4280 2.9739 -2.4855 13 6 8.1687 3.3541 -0.4989 14 6 8.3381 1.1789 -1.7164 15 6 9.6763 1.5409 -2.3073 16 1 9.9067 2.5720 -2.5310 17 6 10.6066 0.5557 -2.5622 18 7 10.3259 -0.7000 -2.2903 19 14 12.2652 1.0043 -3.2953 20 1 12.3318 2.4726 -3.5073 21 1 13.3460 0.5892 -2.3654 22 1 12.4363 0.3078 -4.5957 23 6 3.5504 1.4742 -0.1237 24 8 4.3584 1.0041 0.6484 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.9277 3.2098 1.2268 31 1 0.5001 2.1517 1.3293 32 1 2.0141 1.6846 2.1405 33 1 0.6590 2.3275 -1.4589 34 1 5.9954 1.5421 -0.1275 35 1 9.1672 3.6245 -0.8427 36 1 7.5725 4.2573 -0.3693 37 1 8.2418 2.8273 0.4524 38 1 8.4860 0.6990 -0.7489 39 1 7.8186 0.4936 -2.3862 40 1 10.9804 -1.3931 -2.4693 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765995467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:22 Heat of formation + Delta-G solvation = -35.947730 kcal Electronic energy + Delta-G solvation = -22249.180473 eV Core-core repulsion = 18871.840021 eV Total energy + Delta-G solvation = -3377.340453 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.80838 -40.13319 -38.92922 -37.89244 -36.80999 -34.87168 -33.85695 -32.33002 -30.49667 -28.96493 -27.03840 -26.07566 -24.70797 -24.37333 -22.08510 -21.73908 -20.77448 -19.17699 -18.38793 -18.20572 -18.11279 -17.19454 -16.91275 -16.51749 -16.12786 -15.53902 -15.28240 -15.12427 -14.97012 -14.59601 -14.22502 -13.87516 -13.72319 -13.36502 -13.27806 -13.15713 -12.92649 -12.77970 -12.71321 -12.57133 -12.39718 -12.25224 -11.94838 -11.88930 -11.78344 -11.48672 -11.20352 -10.74148 -10.55400 -10.50333 -10.42772 -8.17449 -6.27192 0.17736 0.50427 0.65347 1.43736 1.44774 1.57604 1.89841 1.92607 2.43755 2.56195 3.16791 3.17283 3.41289 3.59098 3.73587 4.02409 4.25372 4.32368 4.33101 4.40314 4.46017 4.55104 4.68454 4.77542 4.85992 4.99025 5.06433 5.09875 5.16150 5.16929 5.39996 5.40491 5.46476 5.54842 5.62082 5.73036 5.82542 5.84977 6.21907 6.43865 6.86916 7.04931 7.41411 8.95175 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028926 B = 0.003577 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.749102 B = 7825.158545 C = 8034.062180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.133 3.867 4 C -0.144 4.144 5 N -0.686 5.686 6 C 0.716 3.284 7 O -0.562 6.562 8 N -0.451 5.451 9 N -0.284 5.284 10 C 0.131 3.869 11 C -0.037 4.037 12 H 0.074 0.926 13 C -0.119 4.119 14 C 0.040 3.960 15 C -0.528 4.528 16 H 0.071 0.929 17 C 0.000 4.000 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.258 1.258 21 H -0.278 1.278 22 H -0.284 1.284 23 C 0.491 3.509 24 O -0.484 6.484 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.458 0.542 34 H 0.144 0.856 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.007 0.993 39 H -0.017 1.017 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.361 4.191 9.955 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C 0.041 3.959 4 C -0.202 4.202 5 N -0.355 5.355 6 C 0.417 3.583 7 O -0.436 6.436 8 N -0.279 5.279 9 N -0.084 5.084 10 C -0.081 4.081 11 C -0.058 4.058 12 H 0.092 0.908 13 C -0.178 4.178 14 C 0.002 3.998 15 C -0.566 4.566 16 H 0.089 0.911 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.789 3.211 20 H -0.182 1.182 21 H -0.204 1.204 22 H -0.210 1.210 23 C 0.279 3.721 24 O -0.355 6.355 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.110 0.890 33 H 0.308 0.692 34 H 0.161 0.839 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.025 0.975 39 H 0.002 0.998 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.270 4.504 8.956 24.422 hybrid contribution 0.995 -0.686 -0.141 1.217 sum -21.275 3.817 8.815 23.343 Atomic orbital electron populations 1.21810 0.91163 1.03838 1.03600 1.21806 0.99782 0.89965 1.04016 1.21772 0.87244 0.97605 0.89247 1.22131 1.05462 0.99804 0.92789 1.45458 1.07334 1.59161 1.23540 1.15501 0.80392 0.79439 0.83004 1.90971 1.85604 1.44172 1.22847 1.47396 1.05915 1.51758 1.22874 1.74854 0.87926 1.21619 1.24043 1.27452 0.94006 0.89767 0.96884 1.20326 0.86462 0.98895 1.00118 0.90805 1.21602 1.00945 0.97668 0.97546 1.18962 0.93785 0.91331 0.95712 1.21581 0.99584 0.94265 1.41149 0.91110 1.25944 1.02840 0.94813 0.96174 1.70110 1.36711 1.01006 1.49707 0.85398 0.78940 0.78960 0.77757 1.18203 1.20391 1.21006 1.22537 0.93893 0.75898 0.79806 1.90711 1.54694 1.44874 1.45252 0.91788 0.90878 0.89616 0.92497 0.88418 0.91932 0.86155 0.88967 0.69207 0.83936 0.90897 0.91878 0.92211 0.97503 0.99826 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.48 71.98 0.68 -0.18 16 2 C -0.12 -1.51 5.28 30.59 0.16 -1.35 16 3 C 0.13 2.22 1.00 2.99 0.00 2.22 16 4 C -0.14 -1.43 8.73 71.98 0.63 -0.80 16 5 N -0.69 -12.20 5.51 -439.79 -2.42 -14.62 16 6 C 0.72 22.08 8.77 179.44 1.57 23.65 16 7 O -0.56 -21.80 17.91 -3.82 -0.07 -21.87 16 8 N -0.45 -15.42 3.66 -441.10 -1.61 -17.04 16 9 N -0.28 -11.62 11.36 -50.47 -0.57 -12.19 16 10 C 0.13 5.27 9.20 88.67 0.82 6.08 16 11 C -0.04 -1.55 2.75 -11.54 -0.03 -1.58 16 12 H 0.07 3.23 8.11 -2.39 -0.02 3.21 16 13 C -0.12 -4.24 8.99 71.98 0.65 -3.59 16 14 C 0.04 2.12 4.43 29.85 0.13 2.26 16 15 C -0.53 -29.26 8.41 25.60 0.22 -29.04 16 16 H 0.07 3.71 7.06 -2.91 -0.02 3.69 16 17 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 18 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 19 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 20 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 C 0.49 14.02 6.86 87.94 0.60 14.62 16 24 O -0.48 -15.99 15.07 -2.90 -0.04 -16.03 16 25 H 0.06 0.32 7.18 -2.39 -0.02 0.30 16 26 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.09 0.18 6.53 -2.38 -0.02 0.16 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.12 0.36 6.49 -2.39 -0.02 0.34 16 32 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.46 4.79 8.23 -92.71 -0.76 4.03 16 34 H 0.14 5.64 5.07 -2.91 -0.01 5.63 16 35 H 0.07 2.67 6.95 -2.38 -0.02 2.65 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 39 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 40 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -75.95 334.21 3.77 -72.18 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.29 Total: 7.34 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 5.89 Total: 12.72 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -4.33 Total: -100.40 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -0.11 Total: -37.90 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -75.95 3.77 -72.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765995467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.234 kcal (2) G-P(sol) polarization free energy of solvation -75.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds