Wall clock time and date at job start Tue Mar 31 2020 05:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47230 * 2 1 4 4 C 1.52998 * 110.53863 * 66.37634 * 3 2 1 5 5 N 1.47315 * 110.59834 * 303.54330 * 3 2 1 6 6 C 1.34527 * 106.61969 * 241.32078 * 5 3 2 7 7 O 1.21536 * 123.76810 * 180.02562 * 6 5 3 8 8 N 1.33785 * 112.45730 * 359.97438 * 6 5 3 9 9 N 1.40108 * 124.17570 * 179.97438 * 8 6 5 10 10 C 1.28004 * 119.99584 * 185.43172 * 9 8 6 11 11 C 1.50705 * 119.99710 * 174.91592 * 10 9 8 12 12 H 1.09004 * 109.46976 * 359.97438 * 11 10 9 13 13 C 1.52999 * 109.47436 * 240.00137 * 11 10 9 14 14 C 1.53003 * 109.47238 * 119.99776 * 11 10 9 15 15 C 1.50695 * 109.47313 * 185.00334 * 14 11 10 16 16 H 1.08009 * 120.00039 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00376 * 179.72757 * 15 14 11 18 18 N 1.31515 * 119.99590 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00378 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46776 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47134 * 119.99835 * 19 17 15 22 22 H 1.48500 * 109.47183 * 239.99767 * 19 17 15 23 23 C 1.34767 * 111.64573 * 0.23727 * 8 6 5 24 24 O 1.21249 * 127.15554 * 179.73666 * 23 8 6 25 25 H 1.09004 * 109.46754 * 300.00664 * 1 2 3 26 26 H 1.09003 * 109.47172 * 59.99712 * 1 2 3 27 27 H 1.08993 * 109.47119 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46938 * 239.99833 * 2 1 3 29 29 H 1.08995 * 109.47105 * 119.99954 * 2 1 3 30 30 H 1.09007 * 109.46862 * 297.87613 * 4 3 2 31 31 H 1.09007 * 109.46768 * 57.86811 * 4 3 2 32 32 H 1.08995 * 109.47325 * 177.87095 * 4 3 2 33 33 H 0.97003 * 126.68614 * 61.36081 * 5 3 2 34 34 H 1.07994 * 120.00804 * 354.91731 * 10 9 8 35 35 H 1.09000 * 109.47080 * 179.97438 * 13 11 10 36 36 H 1.09004 * 109.46760 * 299.99792 * 13 11 10 37 37 H 1.08996 * 109.46740 * 59.99416 * 13 11 10 38 38 H 1.09000 * 109.47009 * 64.99780 * 14 11 10 39 39 H 1.09005 * 109.46824 * 305.00461 * 14 11 10 40 40 H 0.97000 * 119.99945 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6777 2.1400 1.3127 5 7 1.4944 2.1851 -1.1493 6 6 2.5470 2.5707 -1.8930 7 8 2.4491 3.2099 -2.9221 8 7 3.7136 2.1730 -1.3726 9 7 4.9634 2.4406 -1.9465 10 6 6.0230 1.9338 -1.4376 11 6 7.3530 2.1267 -2.1195 12 1 7.2149 2.7185 -3.0244 13 6 7.9400 0.7626 -2.4875 14 6 8.3100 2.8555 -1.1740 15 6 9.5974 3.1573 -1.8968 16 1 9.7209 2.8588 -2.9275 17 6 10.6157 3.8191 -1.2441 18 7 10.4634 4.1873 0.0092 19 14 12.2118 4.1927 -2.1399 20 1 12.1315 3.6768 -3.5301 21 1 12.4316 5.6610 -2.1682 22 1 13.3412 3.5366 -1.4334 23 6 3.5377 1.4784 -0.2312 24 8 4.3985 0.9858 0.4663 25 1 -0.3633 0.5140 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 0.5932 2.1813 1.4148 31 1 2.1003 1.5828 2.1488 32 1 2.0813 3.1524 1.3096 33 1 0.5586 2.3621 -1.3335 34 1 5.9639 1.3681 -0.5195 35 1 8.9018 0.9021 -2.9812 36 1 8.0781 0.1704 -1.5828 37 1 7.2582 0.2434 -3.1611 38 1 8.5178 2.2244 -0.3099 39 1 7.8527 3.7875 -0.8416 40 1 11.1796 4.6532 0.4683 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765995469.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:29 Heat of formation + Delta-G solvation = -12.254950 kcal Electronic energy + Delta-G solvation = -22248.178470 eV Core-core repulsion = 18871.865413 eV Total energy + Delta-G solvation = -3376.313057 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.66301 -38.86948 -37.68412 -36.56969 -35.29083 -33.42444 -32.29331 -30.93342 -29.93343 -27.02975 -26.06984 -24.57399 -23.65953 -22.71936 -21.08646 -20.51159 -19.22678 -17.83744 -17.03885 -16.92810 -16.40836 -15.94187 -15.82814 -15.28227 -14.55803 -14.48727 -14.30856 -13.55807 -13.50943 -13.21351 -13.00100 -12.81830 -12.69645 -12.50828 -12.06797 -11.83212 -11.71209 -11.65747 -11.37744 -11.22947 -10.92674 -10.82746 -10.54632 -10.43744 -10.03417 -9.76445 -9.70320 -9.24720 -9.04206 -8.92380 -8.37726 -6.01842 -4.04207 1.36341 1.75438 2.10199 2.85166 3.18274 3.32040 3.39829 3.43639 3.57176 4.06857 4.27468 4.43950 4.63268 4.75011 4.80765 5.00579 5.04547 5.24582 5.27640 5.34654 5.41229 5.46455 5.50064 5.63225 5.77064 5.92332 5.92814 6.06231 6.39114 6.55669 6.66305 6.84785 6.90261 6.93951 7.07342 7.60027 7.61017 7.74384 7.95751 8.30755 8.35777 9.00916 9.59668 11.09641 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.031288 B = 0.003535 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.694023 B = 7919.748244 C = 8104.100335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.119 3.881 4 C -0.147 4.147 5 N -0.719 5.719 6 C 0.722 3.278 7 O -0.519 6.519 8 N -0.439 5.439 9 N -0.260 5.260 10 C 0.129 3.871 11 C -0.045 4.045 12 H 0.082 0.918 13 C -0.127 4.127 14 C 0.033 3.967 15 C -0.516 4.516 16 H 0.061 0.939 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.501 3.499 24 O -0.460 6.460 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.440 0.560 34 H 0.143 0.857 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.036 0.964 38 H 0.024 0.976 39 H 0.019 0.981 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.837 -9.137 2.821 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.027 3.973 4 C -0.205 4.205 5 N -0.387 5.387 6 C 0.423 3.577 7 O -0.389 6.389 8 N -0.266 5.266 9 N -0.060 5.060 10 C -0.083 4.083 11 C -0.067 4.067 12 H 0.100 0.900 13 C -0.185 4.185 14 C -0.005 4.005 15 C -0.554 4.554 16 H 0.079 0.921 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.211 1.211 23 C 0.287 3.713 24 O -0.331 6.331 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.286 0.714 34 H 0.160 0.840 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.733 -8.376 2.046 22.454 hybrid contribution 0.620 -0.029 0.349 0.712 sum -20.113 -8.404 2.395 21.929 Atomic orbital electron populations 1.21777 0.93998 1.02797 1.02298 1.21728 0.97517 0.91999 1.04305 1.21576 0.90805 0.95420 0.89520 1.22021 1.03361 1.01256 0.93896 1.45595 1.08351 1.59300 1.25464 1.15258 0.79537 0.79676 0.83259 1.91005 1.84379 1.40968 1.22533 1.47305 1.07084 1.49404 1.22839 1.75142 0.88295 1.21275 1.21282 1.27769 0.93776 0.89330 0.97447 1.20562 0.87213 0.98677 1.00205 0.89953 1.21668 1.01183 0.94801 1.00845 1.19147 0.92492 0.95030 0.93857 1.21174 0.98834 1.37057 0.98334 0.92073 1.25011 0.98794 0.95708 0.94895 1.69977 1.33131 1.39891 1.10318 0.86514 0.83447 0.78010 0.79914 1.19618 1.21065 1.21050 1.21647 0.91566 0.77511 0.80611 1.90738 1.48661 1.44335 1.49327 0.91800 0.92363 0.91588 0.90863 0.89085 0.89990 0.89616 0.91273 0.71433 0.84036 0.90274 0.92784 0.94515 0.95745 0.96249 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.50 37.16 0.35 -0.34 16 2 C -0.12 -0.83 5.27 -26.73 -0.14 -0.97 16 3 C 0.12 1.12 1.01 -132.09 -0.13 0.99 16 4 C -0.15 -1.07 8.71 37.16 0.32 -0.74 16 5 N -0.72 -7.09 5.42 -52.94 -0.29 -7.38 16 6 C 0.72 11.21 8.77 -88.02 -0.77 10.44 16 7 O -0.52 -9.93 17.91 5.33 0.10 -9.83 16 8 N -0.44 -7.42 3.66 -15.79 -0.06 -7.48 16 9 N -0.26 -5.16 11.36 32.67 0.37 -4.79 16 10 C 0.13 2.50 9.20 -13.87 -0.13 2.37 16 11 C -0.05 -0.93 2.75 -91.77 -0.25 -1.18 16 12 H 0.08 1.75 8.11 -51.93 -0.42 1.33 16 13 C -0.13 -2.27 8.99 37.16 0.33 -1.94 16 14 C 0.03 0.83 4.43 -27.88 -0.12 0.71 16 15 C -0.52 -14.04 8.41 -34.44 -0.29 -14.33 16 16 H 0.06 1.60 7.06 -52.48 -0.37 1.23 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.50 7.24 6.86 -10.56 -0.07 7.16 16 24 O -0.46 -7.56 15.06 5.58 0.08 -7.48 16 25 H 0.06 0.22 6.75 -51.93 -0.35 -0.13 16 26 H 0.06 0.25 7.04 -51.93 -0.37 -0.12 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.37 6.82 -51.93 -0.35 0.02 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.44 2.95 8.12 -40.82 -0.33 2.62 16 34 H 0.14 2.70 5.07 -52.49 -0.27 2.44 16 35 H 0.08 1.47 6.95 -51.93 -0.36 1.11 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -33.57 334.37 -5.80 -39.37 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.76 Total: -1.71 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.00 Total: 3.68 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.76 Total: -45.42 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.18 Total: -17.31 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.57 -5.80 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765995469.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.114 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds